RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 RAPGEF6Q8TEU7 1601 aa10.39□□□□□ -0.75
LIMCH1-216ENST00000512820 MCM4P33991 863 aa10.38□□□□□ -0.75
LIMCH1-216ENST00000512820 ZRSR1Q15695 479 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-216ENST00000512820 AMER1Q5JTC6 1135 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-216ENST00000512820 NSD3Q9BZ95 1437 aa10.38□□□□□ -0.75
LIMCH1-216ENST00000512820 REC8O95072 547 aa10.38□□□□□ -0.75
LIMCH1-216ENST00000512820 FGD1P98174 961 aa10.38□□□□□ -0.75
LIMCH1-216ENST00000512820 CHAF1AQ13111 956 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-216ENST00000512820 CDC45O75419 566 aa10.38□□□□□ -0.75
LIMCH1-216ENST00000512820 NUTM2FA1L443 756 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 MAGI3Q5TCQ9 1506 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 C8orf34Q49A92 452 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 PRKAR2BP31323 418 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 ARID3AQ99856 593 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 C1orf115Q9H7X2 142 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 UHRF1BP1Q6BDS2 1440 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 NUCB2P80303 420 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 RILPL2Q969X0 211 aa10.37□□□□□ -0.75
LIMCH1-216ENST00000512820 INTS3Q68E01 1043 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-216ENST00000512820 LMOD2Q6P5Q4 547 aa10.36□□□□□ -0.75
LIMCH1-216ENST00000512820 SCAF11Q99590 1463 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-216ENST00000512820 MCTP1Q6DN14 999 aa10.36□□□□□ -0.75
LIMCH1-216ENST00000512820 SAMD9Q5K651 1589 aa10.36□□□□□ -0.75
LIMCH1-216ENST00000512820 DNMT1P26358 1616 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-216ENST00000512820 FOXD4L6Q3SYB3 417 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 FOXD4L3Q6VB84 417 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 PLEKHH1Q9ULM0 1364 aa10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 ADGRF5Q8IZF2 1346 aa10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 ARHGEF12Q9NZN5 1544 aa10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 DRC7Q8IY82 874 aa10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 GCC1Q96CN9 775 aa10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 TBC1D2Q9BYX2 928 aa10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 ATP10BO94823 1461 aa10.35□□□□□ -0.75
LIMCH1-216ENST00000512820 AMPHP49418 695 aa10.34□□□□□ -0.75
LIMCH1-216ENST00000512820 PHF14O94880 888 aa10.34□□□□□ -0.75
LIMCH1-216ENST00000512820 TMPOP42166 694 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-216ENST00000512820 CHD1LQ86WJ1 897 aa10.34□□□□□ -0.75
LIMCH1-216ENST00000512820 TMEM57Q8N5G2 664 aa10.34□□□□□ -0.75
LIMCH1-216ENST00000512820 NASPP49321 788 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-216ENST00000512820 NAP1L2Q9ULW6 460 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-216ENST00000512820 PRAM1Q96QH2 718 aa10.33□□□□□ -0.76
LIMCH1-216ENST00000512820 SSH1Q8WYL5 1049 aa10.33□□□□□ -0.76
LIMCH1-216ENST00000512820 FAM135AQ9P2D6 1515 aa10.33□□□□□ -0.76
LIMCH1-216ENST00000512820 TWISTNBQ3B726 338 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-216ENST00000512820 VSIG10Q8N0Z9 540 aa10.33□□□□□ -0.76
LIMCH1-216ENST00000512820 GRPEL1Q9HAV7 217 aa10.33□□□□□ -0.76
LIMCH1-216ENST00000512820 KIAA0556O60303 1618 aa10.33□□□□□ -0.76
LIMCH1-216ENST00000512820 ITSN2Q9NZM3 1697 aa10.32□□□□□ -0.76
LIMCH1-216ENST00000512820 NGDNQ8NEJ9 315 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-216ENST00000512820 KDM6BO15054 1643 aa10.32□□□□□ -0.76
LIMCH1-216ENST00000512820 GCC2Q8IWJ2 1684 aa10.32□□□□□ -0.76
LIMCH1-216ENST00000512820 NUP160Q12769 1436 aa10.32□□□□□ -0.76
LIMCH1-216ENST00000512820 ADAMTS12P58397 1594 aa10.32□□□□□ -0.76
LIMCH1-216ENST00000512820 TBC1D32Q96NH3 1257 aa10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 K7ELQ4 463 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 RABEP1Q15276 862 aa10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 ANO2Q9NQ90 1003 aa10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 CABP1Q9NZU7 370 aa10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 ISY1Q9ULR0 285 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 PCDHB15Q9Y5E8 787 aa10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 RPGRIP1LQ68CZ1 1315 aa10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 GOLGA6L6A8MZA4 724 aa10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 LTV1Q96GA3 475 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 GPRASP1Q5JY77 1395 aa10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 CIZ1Q9ULV3 898 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-216ENST00000512820 ADGRL2O95490 1459 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 CSPP1Q1MSJ5 1256 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 CAVIN1Q6NZI2 390 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 CHMP4AQ9BY43 222 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 ASXL1Q8IXJ9 1541 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 KDM2BQ8NHM5 1336 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 GPATCH3Q96I76 525 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 COL17A1Q9UMD9 1497 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 SHANK2Q9UPX8 1470 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 TRIM27P14373 513 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 SPINK5Q9NQ38 1064 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 TAOK2Q9UL54 1235 aa10.3□□□□□ -0.76
LIMCH1-216ENST00000512820 DISP1Q96F81 1524 aa10.29□□□□□ -0.76
LIMCH1-216ENST00000512820 NECTIN2Q92692 538 aa10.29□□□□□ -0.76
LIMCH1-216ENST00000512820 CDK19Q9BWU1 502 aa10.29□□□□□ -0.76
LIMCH1-216ENST00000512820 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-216ENST00000512820 ABCA5Q8WWZ7 1642 aa10.29□□□□□ -0.76
LIMCH1-216ENST00000512820 FCHSD2O94868 740 aa10.29□□□□□ -0.76
LIMCH1-216ENST00000512820 FKBP5Q13451 457 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-216ENST00000512820 TSPYL4Q9UJ04 414 aa10.28□□□□□ -0.76
LIMCH1-216ENST00000512820 PRPF40AO75400 957 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-216ENST00000512820 ZNF428Q96B54 188 aa10.28□□□□□ -0.76
LIMCH1-216ENST00000512820 ATP6V1DQ9Y5K8 247 aa10.28□□□□□ -0.76
LIMCH1-216ENST00000512820 NRDCO43847 1150 aa10.27□□□□□ -0.76
LIMCH1-216ENST00000512820 CCDC173Q0VFZ6 552 aa10.27□□□□□ -0.76
LIMCH1-216ENST00000512820 ESPNB1AK53 854 aa10.27□□□□□ -0.77
LIMCH1-216ENST00000512820 FAM13BQ9NYF5 915 aa10.27□□□□□ -0.77
LIMCH1-216ENST00000512820 HDAC5Q9UQL6 1122 aa10.27□□□□□ -0.77
LIMCH1-216ENST00000512820 KIF21AQ7Z4S6 1674 aa10.27□□□□□ -0.77
LIMCH1-216ENST00000512820 PIK3C2GO75747 1445 aa10.27□□□□□ -0.77
LIMCH1-216ENST00000512820 SEC24BO95487 1268 aa10.27□□□□□ -0.77
LIMCH1-216ENST00000512820 NEK4P51957 841 aa10.27□□□□□ -0.77
LIMCH1-216ENST00000512820 TNNQ9UQP3 1299 aa10.27□□□□□ -0.77
LIMCH1-216ENST00000512820 THUMPD2Q9BTF0 503 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms