RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 CNNM1Q9NRU3 951 aa10.76□□□□□ -0.69
VCAN-208ENST00000512590 MPHOSPH6Q99547 160 aaKnown RBP10.76□□□□□ -0.69
VCAN-208ENST00000512590 ZKSCAN1P17029 563 aaPredicted RBP10.75□□□□□ -0.69
VCAN-208ENST00000512590 ESCO1Q5FWF5 840 aa10.75□□□□□ -0.69
VCAN-208ENST00000512590 SOGA3Q5TF21 947 aa10.75□□□□□ -0.69
VCAN-208ENST00000512590 LPXNO60711 386 aa10.75□□□□□ -0.69
VCAN-208ENST00000512590 POLD1P28340 1107 aa10.75□□□□□ -0.69
VCAN-208ENST00000512590 FOSBP53539 338 aa10.75□□□□□ -0.69
VCAN-208ENST00000512590 ANAPC15P60006 121 aa10.75□□□□□ -0.69
VCAN-208ENST00000512590 MFAP1P55081 439 aaKnown RBP10.75□□□□□ -0.69
VCAN-208ENST00000512590 KCNA4P22459 653 aa10.74□□□□□ -0.69
VCAN-208ENST00000512590 DDX54Q8TDD1 881 aaKnown RBP10.74□□□□□ -0.69
VCAN-208ENST00000512590 RNF20Q5VTR2 975 aa10.74□□□□□ -0.69
VCAN-208ENST00000512590 NF2P35240 595 aa10.74□□□□□ -0.69
VCAN-208ENST00000512590 NBPF8Q3BBV2 869 aa10.74□□□□□ -0.69
VCAN-208ENST00000512590 NBPF14Q5TI25 921 aa10.74□□□□□ -0.69
VCAN-208ENST00000512590 BCL2L13Q9BXK5 485 aa10.74□□□□□ -0.69
VCAN-208ENST00000512590 NUTM2GQ5VZR2 741 aa10.74□□□□□ -0.69
VCAN-208ENST00000512590 DCTN1Q14203 1278 aa10.73□□□□□ -0.69
VCAN-208ENST00000512590 TXLNAP40222 546 aa10.73□□□□□ -0.69
VCAN-208ENST00000512590 TAF12Q16514 161 aa10.73□□□□□ -0.69
VCAN-208ENST00000512590 SKIDA1Q1XH10 827 aa10.73□□□□□ -0.69
VCAN-208ENST00000512590 CRACR2BQ8N4Y2 399 aaPredicted RBP10.73□□□□□ -0.69
VCAN-208ENST00000512590 KTN1Q86UP2 1357 aaKnown RBP10.73□□□□□ -0.69
VCAN-208ENST00000512590 POTEJP0CG39 1038 aa10.73□□□□□ -0.69
VCAN-208ENST00000512590 MAGEC2Q9UBF1 373 aaPredicted RBP10.73□□□□□ -0.69
VCAN-208ENST00000512590 ATP6V1DQ9Y5K8 247 aa10.73□□□□□ -0.69
VCAN-208ENST00000512590 PMFBP1Q8TBY8 1022 aa10.73□□□□□ -0.69
VCAN-208ENST00000512590 ZPR1O75312 459 aa10.72□□□□□ -0.69
VCAN-208ENST00000512590 TRAK1Q9UPV9 953 aa10.72□□□□□ -0.69
VCAN-208ENST00000512590 RRP7AQ9Y3A4 280 aaKnown RBP10.72□□□□□ -0.69
VCAN-208ENST00000512590 NGLY1Q96IV0 654 aa10.72□□□□□ -0.69
VCAN-208ENST00000512590 ZNHIT6Q9NWK9 470 aaKnown RBP10.72□□□□□ -0.69
VCAN-208ENST00000512590 SSR1P43307 286 aaKnown RBP10.72□□□□□ -0.69
VCAN-208ENST00000512590 CCDC181Q5TID7 509 aa10.72□□□□□ -0.69
VCAN-208ENST00000512590 CAGE1Q8TC20 777 aa10.72□□□□□ -0.69
VCAN-208ENST00000512590 EPB41L2O43491 1005 aaKnown RBP10.71□□□□□ -0.69
VCAN-208ENST00000512590 CCDC191Q8NCU4 936 aa10.71□□□□□ -0.69
VCAN-208ENST00000512590 ELL2O00472 640 aaPredicted RBP10.71□□□□□ -0.7
VCAN-208ENST00000512590 ECM2O94769 699 aaPredicted RBP10.7□□□□□ -0.7
VCAN-208ENST00000512590 ROCK2O75116 1388 aaKnown RBP10.7□□□□□ -0.7
VCAN-208ENST00000512590 NOC2LQ9Y3T9 749 aaKnown RBP10.7□□□□□ -0.7
VCAN-208ENST00000512590 TTC39AQ5SRH9 613 aa10.7□□□□□ -0.7
VCAN-208ENST00000512590 TATP17735 454 aaPredicted RBP10.7□□□□□ -0.7
VCAN-208ENST00000512590 MAP7D2Q96T17 732 aa10.69□□□□□ -0.7
VCAN-208ENST00000512590 GBP2P32456 591 aaPredicted RBP10.69□□□□□ -0.7
VCAN-208ENST00000512590 ZNF354CQ86Y25 554 aa10.69□□□□□ -0.7
VCAN-208ENST00000512590 CIZ1Q9ULV3 898 aaPredicted RBP10.69□□□□□ -0.7
VCAN-208ENST00000512590 MINK1Q8N4C8 1332 aaPredicted RBP10.69□□□□□ -0.7
VCAN-208ENST00000512590 ERLIN2O94905 339 aa10.69□□□□□ -0.7
VCAN-208ENST00000512590 ENOX2Q16206 610 aaKnown RBP10.69□□□□□ -0.7
VCAN-208ENST00000512590 PDILTQ8N807 584 aa10.69□□□□□ -0.7
VCAN-208ENST00000512590 OLFM4Q6UX06 510 aa10.69□□□□□ -0.7
VCAN-208ENST00000512590 MPHOSPH8Q99549 860 aa10.69□□□□□ -0.7
VCAN-208ENST00000512590 HSP90AA2PQ14568 343 aaPredicted RBP10.68□□□□□ -0.7
VCAN-208ENST00000512590 CCDC117Q8IWD4 279 aaPredicted RBP10.68□□□□□ -0.7
VCAN-208ENST00000512590 TRIM22Q8IYM9 498 aa10.68□□□□□ -0.7
VCAN-208ENST00000512590 CCDC150Q8NCX0 1101 aa10.68□□□□□ -0.7
VCAN-208ENST00000512590 CABP4P57796 275 aa10.68□□□□□ -0.7
VCAN-208ENST00000512590 VGFO15240 615 aaPredicted RBP10.68□□□□□ -0.7
VCAN-208ENST00000512590 STK11IPQ8N1F8 1099 aa10.68□□□□□ -0.7
VCAN-208ENST00000512590 BICD2Q8TD16 824 aa10.68□□□□□ -0.7
VCAN-208ENST00000512590 DDX23Q9BUQ8 820 aaKnown RBP10.68□□□□□ -0.7
VCAN-208ENST00000512590 FERMT2Q96AC1 680 aa10.68□□□□□ -0.7
VCAN-208ENST00000512590 MYO1BO43795 1136 aa10.68□□□□□ -0.7
VCAN-208ENST00000512590 ADAMTS2O95450 1211 aa10.68□□□□□ -0.7
VCAN-208ENST00000512590 GZF1Q9H116 711 aaPredicted RBP10.68□□□□□ -0.7
VCAN-208ENST00000512590 LMOD1P29536 600 aaPredicted RBP10.67□□□□□ -0.7
VCAN-208ENST00000512590 USP5P45974 858 aa10.67□□□□□ -0.7
VCAN-208ENST00000512590 FKBP5Q13451 457 aaPredicted RBP10.67□□□□□ -0.7
VCAN-208ENST00000512590 PKD2Q13563 968 aa10.67□□□□□ -0.7
VCAN-208ENST00000512590 FOXD4L6Q3SYB3 417 aaPredicted RBP10.67□□□□□ -0.7
VCAN-208ENST00000512590 FOXD4L3Q6VB84 417 aaPredicted RBP10.67□□□□□ -0.7
VCAN-208ENST00000512590 TANGO6Q9C0B7 1094 aa10.67□□□□□ -0.7
VCAN-208ENST00000512590 ATP2B1P20020 1258 aa10.66□□□□□ -0.7
VCAN-208ENST00000512590 SSBP05455 408 aaKnown RBP eCLIP10.66□□□□□ -0.7
VCAN-208ENST00000512590 CPLX3Q8WVH0 158 aa10.66□□□□□ -0.7
VCAN-208ENST00000512590 SLU7O95391 586 aaKnown RBP10.66□□□□□ -0.7
VCAN-208ENST00000512590 RPGRQ92834 1020 aaKnown RBP10.66□□□□□ -0.7
VCAN-208ENST00000512590 FEZ1Q99689 392 aa10.66□□□□□ -0.7
VCAN-208ENST00000512590 STAMBPO95630 424 aa10.66□□□□□ -0.7
VCAN-208ENST00000512590 ZNF592Q92610 1267 aa10.66□□□□□ -0.7
VCAN-208ENST00000512590 ZNF622Q969S3 477 aaKnown RBP eCLIP10.66□□□□□ -0.7
VCAN-208ENST00000512590 SMG6Q86US8 1419 aaKnown RBP10.66□□□□□ -0.7
VCAN-208ENST00000512590 FAM161AQ3B820 660 aa10.66□□□□□ -0.7
VCAN-208ENST00000512590 CCDC146Q8IYE0 955 aa10.66□□□□□ -0.7
VCAN-208ENST00000512590 CLUAP1Q96AJ1 413 aa10.66□□□□□ -0.7
VCAN-208ENST00000512590 RBM19Q9Y4C8 960 aaKnown RBP10.66□□□□□ -0.7
VCAN-208ENST00000512590 E9PSI1 815 aa10.65□□□□□ -0.7
VCAN-208ENST00000512590 ERC2O15083 957 aa10.65□□□□□ -0.7
VCAN-208ENST00000512590 LIG1P18858 919 aa10.65□□□□□ -0.7
VCAN-208ENST00000512590 CCDC158Q5M9N0 1113 aa10.65□□□□□ -0.7
VCAN-208ENST00000512590 NACAP1Q9BZK3 213 aa10.65□□□□□ -0.7
VCAN-208ENST00000512590 CENPJQ9HC77 1338 aaPredicted RBP10.65□□□□□ -0.7
VCAN-208ENST00000512590 ACBD3Q9H3P7 528 aa10.65□□□□□ -0.71
VCAN-208ENST00000512590 EHMT1Q9H9B1 1298 aa10.65□□□□□ -0.71
VCAN-208ENST00000512590 PRDM11Q9NQV5 511 aa10.65□□□□□ -0.71
VCAN-208ENST00000512590 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.64□□□□□ -0.71
VCAN-208ENST00000512590 BMP2KQ9NSY1 1161 aaPredicted RBP10.64□□□□□ -0.71
VCAN-208ENST00000512590 DMRT2Q9Y5R5 561 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms