RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 DIXDC1Q155Q3 683 aa6.12□□□□□ -1.43
LIMCH1-212ENST00000511424 CCDC24Q8N4L8 307 aa6.12□□□□□ -1.43
LIMCH1-212ENST00000511424 FAM160A2Q8N612 972 aaPredicted RBP6.12□□□□□ -1.43
LIMCH1-212ENST00000511424 SYMPKQ92797 1274 aaKnown RBP6.12□□□□□ -1.43
LIMCH1-212ENST00000511424 MS4A1P11836 297 aa6.11□□□□□ -1.43
LIMCH1-212ENST00000511424 NDUFV2P19404 249 aa6.11□□□□□ -1.43
LIMCH1-212ENST00000511424 PDZRN3Q9UPQ7 1066 aa6.11□□□□□ -1.43
LIMCH1-212ENST00000511424 MOXD2PA6NHM9 499 aa6.1□□□□□ -1.43
LIMCH1-212ENST00000511424 CD2BP2O95400 341 aaKnown RBP6.1□□□□□ -1.43
LIMCH1-212ENST00000511424 LAPTM4AQ15012 233 aa6.1□□□□□ -1.43
LIMCH1-212ENST00000511424 CSPP1Q1MSJ5 1256 aa6.1□□□□□ -1.43
LIMCH1-212ENST00000511424 MSS51Q4VC12 460 aa6.1□□□□□ -1.43
LIMCH1-212ENST00000511424 ZNF697Q5TEC3 545 aa6.1□□□□□ -1.43
LIMCH1-212ENST00000511424 TBC1D2Q9BYX2 928 aa6.1□□□□□ -1.43
LIMCH1-212ENST00000511424 SPRYD7Q5W111 196 aa6.09□□□□□ -1.43
LIMCH1-212ENST00000511424 LIAT1Q6ZQX7 453 aa6.09□□□□□ -1.43
LIMCH1-212ENST00000511424 FOXC1Q12948 553 aa6.08□□□□□ -1.44
LIMCH1-212ENST00000511424 PLA2G2CQ5R387 149 aa6.08□□□□□ -1.44
LIMCH1-212ENST00000511424 ZNF598Q86UK7 904 aaKnown RBP6.08□□□□□ -1.44
LIMCH1-212ENST00000511424 RETREG3Q86VR2 466 aa6.08□□□□□ -1.44
LIMCH1-212ENST00000511424 TSC1Q92574 1164 aa6.08□□□□□ -1.44
LIMCH1-212ENST00000511424 NUTM2BA6NNL0 878 aaPredicted RBP6.07□□□□□ -1.44
LIMCH1-212ENST00000511424 NUTM2EB1AL46 878 aaPredicted RBP6.07□□□□□ -1.44
LIMCH1-212ENST00000511424 TNFRSF10AO00220 468 aa6.07□□□□□ -1.44
LIMCH1-212ENST00000511424 MTMR2Q13614 643 aa6.07□□□□□ -1.44
LIMCH1-212ENST00000511424 NUTM2DQ5VT03 806 aaPredicted RBP6.07□□□□□ -1.44
LIMCH1-212ENST00000511424 NUTM2AQ8IVF1 878 aaPredicted RBP6.07□□□□□ -1.44
LIMCH1-212ENST00000511424 PCDHGC3Q9UN70 934 aa6.07□□□□□ -1.44
LIMCH1-212ENST00000511424 RIC3Q7Z5B4 369 aa6.06□□□□□ -1.44
LIMCH1-212ENST00000511424 SPDYE5A6NIY4 337 aa6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 NRG2O14511 850 aaPredicted RBP6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 DXOO77932 396 aaKnown RBP6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 JUNDP17535 347 aa6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 RPIAP49247 311 aa6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 MMP16P51512 607 aa6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 RSBN1LQ6PCB5 846 aaPredicted RBP6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 PRR7Q8TB68 274 aa6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 EMID1Q96A84 441 aaPredicted RBP6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 NUDT12Q9BQG2 462 aa6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 RSPH6AQ9H0K4 717 aa6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 ZBTB3Q9H5J0 574 aa6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 GPBP1L1Q9HC44 474 aaPredicted RBP6.05□□□□□ -1.44
LIMCH1-212ENST00000511424 PKDCCQ504Y2 493 aa6.04□□□□□ -1.44
LIMCH1-212ENST00000511424 KDM4CQ9H3R0 1056 aa6.04□□□□□ -1.44
LIMCH1-212ENST00000511424 POLR3EQ9NVU0 708 aa6.04□□□□□ -1.44
LIMCH1-212ENST00000511424 PCDHB15Q9Y5E8 787 aa6.04□□□□□ -1.44
LIMCH1-212ENST00000511424 TRIM32Q13049 653 aa6.03□□□□□ -1.44
LIMCH1-212ENST00000511424 TPRNQ4KMQ1 711 aa6.03□□□□□ -1.44
LIMCH1-212ENST00000511424 MYSM1Q5VVJ2 828 aa6.03□□□□□ -1.44
LIMCH1-212ENST00000511424 TTC24A2A3L6 582 aaPredicted RBP6.02□□□□□ -1.45
LIMCH1-212ENST00000511424 FAM187AA6NFU0 413 aa6.02□□□□□ -1.45
LIMCH1-212ENST00000511424 SPTLC1O15269 473 aa6.02□□□□□ -1.45
LIMCH1-212ENST00000511424 HRCP23327 699 aa6.02□□□□□ -1.45
LIMCH1-212ENST00000511424 CTHP32929 405 aa6.02□□□□□ -1.45
LIMCH1-212ENST00000511424 NEUROD2Q15784 382 aa6.02□□□□□ -1.45
LIMCH1-212ENST00000511424 CYP4X1Q8N118 509 aa6.02□□□□□ -1.45
LIMCH1-212ENST00000511424 CABLES1Q8TDN4 633 aa6.02□□□□□ -1.45
LIMCH1-212ENST00000511424 CCNYL3P0C7X3 344 aa6.01□□□□□ -1.45
LIMCH1-212ENST00000511424 GJA5P36382 358 aa6.01□□□□□ -1.45
LIMCH1-212ENST00000511424 CLK2P49760 499 aaKnown RBP6.01□□□□□ -1.45
LIMCH1-212ENST00000511424 DDRGK1Q96HY6 314 aa6.01□□□□□ -1.45
LIMCH1-212ENST00000511424 LIMD1Q9UGP4 676 aa6.01□□□□□ -1.45
LIMCH1-212ENST00000511424 PTPRNQ16849 979 aa6□□□□□ -1.45
LIMCH1-212ENST00000511424 PRPF38BQ5VTL8 546 aaKnown RBP6□□□□□ -1.45
LIMCH1-212ENST00000511424 TRAF7Q6Q0C0 670 aa6□□□□□ -1.45
LIMCH1-212ENST00000511424 TRIM67Q6ZTA4 783 aa6□□□□□ -1.45
LIMCH1-212ENST00000511424 FAM117AQ9C073 453 aa6□□□□□ -1.45
LIMCH1-212ENST00000511424 GDF9O60383 454 aa5.99□□□□□ -1.45
LIMCH1-212ENST00000511424 PRR20EP86478 221 aa5.99□□□□□ -1.45
LIMCH1-212ENST00000511424 PRR20CP86479 221 aa5.99□□□□□ -1.45
LIMCH1-212ENST00000511424 PRR20DP86480 221 aa5.99□□□□□ -1.45
LIMCH1-212ENST00000511424 PRR20BP86481 221 aa5.99□□□□□ -1.45
LIMCH1-212ENST00000511424 PRR20AP86496 221 aa5.99□□□□□ -1.45
LIMCH1-212ENST00000511424 HELBQ8NG08 1087 aaPredicted RBP5.99□□□□□ -1.45
LIMCH1-212ENST00000511424 CFAP99D6REC4 459 aa5.98□□□□□ -1.45
LIMCH1-212ENST00000511424 QPCTQ16769 361 aa5.98□□□□□ -1.45
LIMCH1-212ENST00000511424 PKD2L1Q9P0L9 805 aa5.98□□□□□ -1.45
LIMCH1-212ENST00000511424 KCNH2Q12809 1159 aa5.97□□□□□ -1.45
LIMCH1-212ENST00000511424 LINC01559Q495D7 138 aa5.97□□□□□ -1.45
LIMCH1-212ENST00000511424 RC3H1Q5TC82 1133 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-212ENST00000511424 DESI1Q6ICB0 168 aa5.97□□□□□ -1.45
LIMCH1-212ENST00000511424 PTCRAQ6ISU1 281 aaPredicted RBP5.97□□□□□ -1.45
LIMCH1-212ENST00000511424 EHBP1Q8NDI1 1231 aa5.97□□□□□ -1.45
LIMCH1-212ENST00000511424 UNC93B1Q9H1C4 597 aa5.97□□□□□ -1.45
LIMCH1-212ENST00000511424 EVA1BQ9NVM1 165 aa5.97□□□□□ -1.45
LIMCH1-212ENST00000511424 WNT7AO00755 349 aa5.96□□□□□ -1.46
LIMCH1-212ENST00000511424 DGAT1O75907 488 aa5.96□□□□□ -1.46
LIMCH1-212ENST00000511424 WNT7BP56706 349 aa5.96□□□□□ -1.46
LIMCH1-212ENST00000511424 AGERQ15109 404 aa5.96□□□□□ -1.46
LIMCH1-212ENST00000511424 SKIV2LQ15477 1246 aaKnown RBP5.96□□□□□ -1.46
LIMCH1-212ENST00000511424 LYPD8Q6UX82 237 aa5.96□□□□□ -1.46
LIMCH1-212ENST00000511424 IL27Q8NEV9 243 aa5.96□□□□□ -1.46
LIMCH1-212ENST00000511424 MRGPRX2Q96LB1 330 aa5.96□□□□□ -1.46
LIMCH1-212ENST00000511424 LILRB3O75022 631 aa5.95□□□□□ -1.46
LIMCH1-212ENST00000511424 RTL5Q5HYW3 569 aaPredicted RBP5.95□□□□□ -1.46
LIMCH1-212ENST00000511424 SNIP1Q8TAD8 396 aaKnown RBP5.95□□□□□ -1.46
LIMCH1-212ENST00000511424 BAP1Q92560 729 aa5.95□□□□□ -1.46
LIMCH1-212ENST00000511424 ALDH1A1P00352 501 aa5.94□□□□□ -1.46
LIMCH1-212ENST00000511424 TUSC1Q2TAM9 212 aa5.94□□□□□ -1.46
LIMCH1-212ENST00000511424 SH3D19Q5HYK7 790 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms