RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ACTN4O43707 911 aaKnown RBP8.01□□□□□ -1.13
HMGB1P28-201ENST00000507778 AP1G2O75843 785 aa8.01□□□□□ -1.13
HMGB1P28-201ENST00000507778 SNRKQ9NRH2 765 aa8.01□□□□□ -1.13
HMGB1P28-201ENST00000507778 A6NJR5 290 aa8□□□□□ -1.13
HMGB1P28-201ENST00000507778 MTMR2Q13614 643 aa8□□□□□ -1.13
HMGB1P28-201ENST00000507778 WNT2BQ93097 391 aa8□□□□□ -1.13
HMGB1P28-201ENST00000507778 CLUAP1Q96AJ1 413 aa8□□□□□ -1.13
HMGB1P28-201ENST00000507778 C6orf229H3BNL8 230 aa7.99□□□□□ -1.13
HMGB1P28-201ENST00000507778 RAD21O60216 631 aa7.99□□□□□ -1.13
HMGB1P28-201ENST00000507778 BCAMP50895 628 aa7.99□□□□□ -1.13
HMGB1P28-201ENST00000507778 RNF166Q96A37 237 aaPredicted RBP7.99□□□□□ -1.13
HMGB1P28-201ENST00000507778 TSR3Q9UJK0 312 aaKnown RBP7.99□□□□□ -1.13
HMGB1P28-201ENST00000507778 HPS5Q9UPZ3 1129 aa7.99□□□□□ -1.13
HMGB1P28-201ENST00000507778 MORN1Q5T089 497 aa7.98□□□□□ -1.13
HMGB1P28-201ENST00000507778 PUS10Q3MIT2 529 aaKnown RBP7.97□□□□□ -1.13
HMGB1P28-201ENST00000507778 Q3C1V9 767 aa7.96□□□□□ -1.14
HMGB1P28-201ENST00000507778 SLC27A5Q9Y2P5 690 aa7.96□□□□□ -1.14
HMGB1P28-201ENST00000507778 APBB1O00213 710 aa7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 SOCS7O14512 581 aa7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 TRAK2O60296 914 aa7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 USP17L8P0C7I0 530 aa7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 APLP1P51693 650 aa7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 MTMR14Q8NCE2 650 aa7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 HELBQ8NG08 1087 aaPredicted RBP7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 SYMPKQ92797 1274 aaKnown RBP7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 POM121Q96HA1 1249 aa7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 PRM3Q9NNZ6 103 aa7.95□□□□□ -1.14
HMGB1P28-201ENST00000507778 CFAP99D6REC4 459 aa7.94□□□□□ -1.14
HMGB1P28-201ENST00000507778 TSC1Q92574 1164 aa7.94□□□□□ -1.14
HMGB1P28-201ENST00000507778 COG6Q9Y2V7 657 aa7.94□□□□□ -1.14
HMGB1P28-201ENST00000507778 CTDSPL2Q05D32 466 aa7.93□□□□□ -1.14
HMGB1P28-201ENST00000507778 RETREG3Q86VR2 466 aa7.93□□□□□ -1.14
HMGB1P28-201ENST00000507778 PROSER2Q86WR7 435 aaPredicted RBP7.93□□□□□ -1.14
HMGB1P28-201ENST00000507778 PRR7Q8TB68 274 aa7.93□□□□□ -1.14
HMGB1P28-201ENST00000507778 WBP1LQ9NX94 342 aa7.93□□□□□ -1.14
HMGB1P28-201ENST00000507778 PCDHB3Q9Y5E6 796 aa7.93□□□□□ -1.14
HMGB1P28-201ENST00000507778 NR1I2O75469 434 aa7.92□□□□□ -1.14
HMGB1P28-201ENST00000507778 SCUBE3Q8IX30 993 aa7.92□□□□□ -1.14
HMGB1P28-201ENST00000507778 THSD4Q6ZMP0 1018 aa7.91□□□□□ -1.14
HMGB1P28-201ENST00000507778 FNBP4Q8N3X1 1017 aaPredicted RBP7.91□□□□□ -1.14
HMGB1P28-201ENST00000507778 KCTD12Q96CX2 325 aaKnown RBP7.91□□□□□ -1.14
HMGB1P28-201ENST00000507778 GDPD2Q9HCC8 539 aa7.91□□□□□ -1.14
HMGB1P28-201ENST00000507778 SALL2Q9Y467 1007 aaPredicted RBP7.91□□□□□ -1.14
HMGB1P28-201ENST00000507778 FMNL1O95466 1100 aaPredicted RBP7.9□□□□□ -1.14
HMGB1P28-201ENST00000507778 BRICD5Q6PL45 260 aa7.9□□□□□ -1.14
HMGB1P28-201ENST00000507778 BLOC1S3Q6QNY0 202 aa7.9□□□□□ -1.14
HMGB1P28-201ENST00000507778 RNF19BQ6ZMZ0 732 aa7.9□□□□□ -1.14
HMGB1P28-201ENST00000507778 ARID3CA6NKF2 412 aa7.89□□□□□ -1.15
HMGB1P28-201ENST00000507778 WWC1Q8IX03 1113 aa7.89□□□□□ -1.15
HMGB1P28-201ENST00000507778 LRRN4Q8WUT4 740 aa7.89□□□□□ -1.15
HMGB1P28-201ENST00000507778 USB1Q9BQ65 265 aaKnown RBP7.89□□□□□ -1.15
HMGB1P28-201ENST00000507778 ABL2P42684 1182 aa7.88□□□□□ -1.15
HMGB1P28-201ENST00000507778 DESI1Q6ICB0 168 aa7.88□□□□□ -1.15
HMGB1P28-201ENST00000507778 NYAP1Q6ZVC0 841 aa7.88□□□□□ -1.15
HMGB1P28-201ENST00000507778 GJD4Q96KN9 370 aaPredicted RBP7.88□□□□□ -1.15
HMGB1P28-201ENST00000507778 ZNF777Q9ULD5 760 aaPredicted RBP7.88□□□□□ -1.15
HMGB1P28-201ENST00000507778 NDUFB9Q9Y6M9 179 aa7.88□□□□□ -1.15
HMGB1P28-201ENST00000507778 THAP11Q96EK4 314 aa7.87□□□□□ -1.15
HMGB1P28-201ENST00000507778 ARXQ96QS3 562 aa7.87□□□□□ -1.15
HMGB1P28-201ENST00000507778 C1orf115Q9H7X2 142 aa7.87□□□□□ -1.15
HMGB1P28-201ENST00000507778 HMX1Q9NP08 348 aaPredicted RBP7.87□□□□□ -1.15
HMGB1P28-201ENST00000507778 TBC1D2BQ9UPU7 963 aa7.87□□□□□ -1.15
HMGB1P28-201ENST00000507778 ZNF330Q9Y3S2 320 aaPredicted RBP7.87□□□□□ -1.15
HMGB1P28-201ENST00000507778 TRIM34Q9BYJ4 488 aa7.86□□□□□ -1.15
HMGB1P28-201ENST00000507778 PER1O15534 1290 aaPredicted RBP7.85□□□□□ -1.15
HMGB1P28-201ENST00000507778 PTPN5P54829 565 aa7.85□□□□□ -1.15
HMGB1P28-201ENST00000507778 COPS2P61201 443 aa7.85□□□□□ -1.15
HMGB1P28-201ENST00000507778 LYPD8Q6UX82 237 aa7.85□□□□□ -1.15
HMGB1P28-201ENST00000507778 ARID3AQ99856 593 aa7.84□□□□□ -1.15
HMGB1P28-201ENST00000507778 HCSTQ9UBK5 93 aa7.84□□□□□ -1.15
HMGB1P28-201ENST00000507778 JUNDP17535 347 aa7.83□□□□□ -1.16
HMGB1P28-201ENST00000507778 SPSB2Q99619 263 aa7.83□□□□□ -1.16
HMGB1P28-201ENST00000507778 NR6A1Q15406 480 aa7.82□□□□□ -1.16
HMGB1P28-201ENST00000507778 ZPR1O75312 459 aa7.81□□□□□ -1.16
HMGB1P28-201ENST00000507778 WASHC4Q2M389 1173 aa7.81□□□□□ -1.16
HMGB1P28-201ENST00000507778 MSS51Q4VC12 460 aa7.81□□□□□ -1.16
HMGB1P28-201ENST00000507778 FAM160A2Q8N612 972 aaPredicted RBP7.81□□□□□ -1.16
HMGB1P28-201ENST00000507778 EPS8L1Q8TE68 723 aa7.81□□□□□ -1.16
HMGB1P28-201ENST00000507778 MTRQ99707 1265 aa7.81□□□□□ -1.16
HMGB1P28-201ENST00000507778 IRF5Q13568 498 aa7.8□□□□□ -1.16
HMGB1P28-201ENST00000507778 PTPRNQ16849 979 aa7.8□□□□□ -1.16
HMGB1P28-201ENST00000507778 HOMEZQ8IX15 550 aa7.8□□□□□ -1.16
HMGB1P28-201ENST00000507778 CCDC82Q8N4S0 544 aa7.8□□□□□ -1.16
HMGB1P28-201ENST00000507778 PNMA1Q8ND90 353 aa7.8□□□□□ -1.16
HMGB1P28-201ENST00000507778 IL21Q9HBE4 155 aa7.79□□□□□ -1.16
HMGB1P28-201ENST00000507778 SERPINA10Q9UK55 444 aa7.79□□□□□ -1.16
HMGB1P28-201ENST00000507778 DXOO77932 396 aaKnown RBP7.78□□□□□ -1.16
HMGB1P28-201ENST00000507778 MMP16P51512 607 aa7.78□□□□□ -1.16
HMGB1P28-201ENST00000507778 TJAP1Q5JTD0 557 aa7.78□□□□□ -1.16
HMGB1P28-201ENST00000507778 POM121CA8CG34 1229 aa7.77□□□□□ -1.17
HMGB1P28-201ENST00000507778 TLL1O43897 1013 aa7.77□□□□□ -1.17
HMGB1P28-201ENST00000507778 GPR37L1O60883 481 aa7.77□□□□□ -1.17
HMGB1P28-201ENST00000507778 ADH1BP00325 375 aa7.77□□□□□ -1.17
HMGB1P28-201ENST00000507778 F12P00748 615 aaPredicted RBP7.77□□□□□ -1.17
HMGB1P28-201ENST00000507778 CTHP32929 405 aa7.77□□□□□ -1.17
HMGB1P28-201ENST00000507778 CCDC97Q96F63 343 aaPredicted RBP7.77□□□□□ -1.17
HMGB1P28-201ENST00000507778 CCNYL3P0C7X3 344 aa7.76□□□□□ -1.17
HMGB1P28-201ENST00000507778 VAC14Q08AM6 782 aa7.76□□□□□ -1.17
HMGB1P28-201ENST00000507778 ZNF516Q92618 1163 aa7.76□□□□□ -1.17
HMGB1P28-201ENST00000507778 CALR3Q96L12 384 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms