RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 CARD14Q9BXL6 1004 aa22.6■■□□□ 1.21
NUP54-205ENST00000507257 PDZRN3Q9UPQ7 1066 aa22.6■■□□□ 1.21
NUP54-205ENST00000507257 PCDHB15Q9Y5E8 787 aa22.6■■□□□ 1.21
NUP54-205ENST00000507257 IFT172Q9UG01 1749 aa22.6■■□□□ 1.21
NUP54-205ENST00000507257 GOLGA6L3A6NEY3 463 aa22.59■■□□□ 1.21
NUP54-205ENST00000507257 MCM4P33991 863 aa22.59■■□□□ 1.21
NUP54-205ENST00000507257 RUNDC1Q96C34 613 aa22.59■■□□□ 1.21
NUP54-205ENST00000507257 ISY1Q9ULR0 285 aaKnown RBP22.59■■□□□ 1.21
NUP54-205ENST00000507257 ARAP3Q8WWN8 1544 aa22.58■■□□□ 1.21
NUP54-205ENST00000507257 XRCC6P12956 609 aaKnown RBP eCLIP22.57■■□□□ 1.2
NUP54-205ENST00000507257 CLCN1P35523 988 aa22.57■■□□□ 1.2
NUP54-205ENST00000507257 ZFYVE16Q7Z3T8 1539 aa22.57■■□□□ 1.2
NUP54-205ENST00000507257 CHMP5Q9NZZ3 219 aa22.57■■□□□ 1.2
NUP54-205ENST00000507257 NRXN1Q9ULB1 1477 aa22.56■■□□□ 1.2
NUP54-205ENST00000507257 EFCAB2Q5VUJ9 269 aa22.56■■□□□ 1.2
NUP54-205ENST00000507257 ADGRL1O94910 1474 aa22.55■■□□□ 1.2
NUP54-205ENST00000507257 SETBP1Q9Y6X0 1596 aa22.55■■□□□ 1.2
NUP54-205ENST00000507257 CT47B1P0C2W7 299 aaPredicted RBP22.55■■□□□ 1.2
NUP54-205ENST00000507257 TRAPPC8Q9Y2L5 1435 aa22.54■■□□□ 1.2
NUP54-205ENST00000507257 RLBP1P12271 317 aa22.53■■□□□ 1.2
NUP54-205ENST00000507257 ZC3H13Q5T200 1668 aaKnown RBP22.52■■□□□ 1.2
NUP54-205ENST00000507257 KIF1BO60333 1816 aa22.52■■□□□ 1.2
NUP54-205ENST00000507257 ADGRB2O60241 1585 aa22.51■■□□□ 1.19
NUP54-205ENST00000507257 MRE11P49959 708 aa22.51■■□□□ 1.19
NUP54-205ENST00000507257 NCOA3Q9Y6Q9 1424 aa22.51■■□□□ 1.19
NUP54-205ENST00000507257 ZNF518AQ6AHZ1 1483 aa22.51■■□□□ 1.19
NUP54-205ENST00000507257 MVPQ14764 893 aaKnown RBP22.5■■□□□ 1.19
NUP54-205ENST00000507257 TCP11L2Q8N4U5 519 aa22.49■■□□□ 1.19
NUP54-205ENST00000507257 MYH16Q9H6N6 1097 aa22.49■■□□□ 1.19
NUP54-205ENST00000507257 DDX11L8A8MPP1 907 aa22.49■■□□□ 1.19
NUP54-205ENST00000507257 C22orf23Q9BZE7 217 aa22.49■■□□□ 1.19
NUP54-205ENST00000507257 TRAK2O60296 914 aa22.47■■□□□ 1.19
NUP54-205ENST00000507257 HDAC1Q13547 482 aaPredicted RBP22.47■■□□□ 1.19
NUP54-205ENST00000507257 SPAG9O60271 1321 aaKnown RBP22.47■■□□□ 1.19
NUP54-205ENST00000507257 INO80Q9ULG1 1556 aaPredicted RBP22.47■■□□□ 1.19
NUP54-205ENST00000507257 NSD3Q9BZ95 1437 aa22.47■■□□□ 1.19
NUP54-205ENST00000507257 PNNQ9H307 717 aaKnown RBP22.46■■□□□ 1.19
NUP54-205ENST00000507257 CFAP70Q5T0N1 1121 aa22.45■■□□□ 1.18
NUP54-205ENST00000507257 ZKSCAN2Q63HK3 967 aa22.45■■□□□ 1.18
NUP54-205ENST00000507257 MORC1Q86VD1 984 aa22.45■■□□□ 1.18
NUP54-205ENST00000507257 UHRF1BP1LA0JNW5 1464 aa22.44■■□□□ 1.18
NUP54-205ENST00000507257 ZNF692Q9BU19 519 aaPredicted RBP22.44■■□□□ 1.18
NUP54-205ENST00000507257 ZCCHC11Q5TAX3 1644 aaKnown RBP22.44■■□□□ 1.18
NUP54-205ENST00000507257 DDIT3P35638 169 aa22.43■■□□□ 1.18
NUP54-205ENST00000507257 SNX21Q969T3 373 aa22.43■■□□□ 1.18
NUP54-205ENST00000507257 MROH1Q8NDA8 1641 aa22.42■■□□□ 1.18
NUP54-205ENST00000507257 NSD2O96028 1365 aa22.42■■□□□ 1.18
NUP54-205ENST00000507257 GLIPR1L2Q4G1C9 344 aa22.42■■□□□ 1.18
NUP54-205ENST00000507257 DZIP1LQ8IYY4 767 aaKnown RBP22.42■■□□□ 1.18
NUP54-205ENST00000507257 CIZ1Q9ULV3 898 aaPredicted RBP22.42■■□□□ 1.18
NUP54-205ENST00000507257 TNNQ9UQP3 1299 aa22.42■■□□□ 1.18
NUP54-205ENST00000507257 CFAP53Q96M91 514 aa22.41■■□□□ 1.18
NUP54-205ENST00000507257 QRICH2Q9H0J4 1663 aa22.41■■□□□ 1.18
NUP54-205ENST00000507257 PTMSP20962 102 aa22.41■■□□□ 1.18
NUP54-205ENST00000507257 PUS7Q96PZ0 661 aaKnown RBP22.41■■□□□ 1.18
NUP54-205ENST00000507257 ATP7AQ04656 1500 aa22.41■■□□□ 1.18
NUP54-205ENST00000507257 EFCAB6Q5THR3 1501 aa22.41■■□□□ 1.18
NUP54-205ENST00000507257 FANCAO15360 1455 aa22.4■■□□□ 1.18
NUP54-205ENST00000507257 ADGRF5Q8IZF2 1346 aa22.4■■□□□ 1.18
NUP54-205ENST00000507257 HSCBQ8IWL3 235 aa22.4■■□□□ 1.18
NUP54-205ENST00000507257 SMC5Q8IY18 1101 aa22.4■■□□□ 1.18
NUP54-205ENST00000507257 CHD1O14646 1710 aa22.4■■□□□ 1.18
NUP54-205ENST00000507257 MROH2AA6NES4 1674 aa22.4■■□□□ 1.18
NUP54-205ENST00000507257 RBM25P49756 843 aaKnown RBP22.39■■□□□ 1.18
NUP54-205ENST00000507257 PANK2Q9BZ23 570 aa22.39■■□□□ 1.18
NUP54-205ENST00000507257 GRPEL1Q9HAV7 217 aa22.39■■□□□ 1.17
NUP54-205ENST00000507257 DDX19BQ9UMR2 479 aa22.39■■□□□ 1.17
NUP54-205ENST00000507257 ADGRB3O60242 1522 aa22.38■■□□□ 1.17
NUP54-205ENST00000507257 LMTK2Q8IWU2 1503 aa22.38■■□□□ 1.17
NUP54-205ENST00000507257 RRP9O43818 475 aaKnown RBP22.37■■□□□ 1.17
NUP54-205ENST00000507257 RRP7AQ9Y3A4 280 aaKnown RBP22.37■■□□□ 1.17
NUP54-205ENST00000507257 FTSJ3Q8IY81 847 aaKnown RBP22.37■■□□□ 1.17
NUP54-205ENST00000507257 NEUROD2Q15784 382 aa22.36■■□□□ 1.17
NUP54-205ENST00000507257 MFAP1P55081 439 aaKnown RBP22.35■■□□□ 1.17
NUP54-205ENST00000507257 NAP1L5Q96NT1 182 aaPredicted RBP22.35■■□□□ 1.17
NUP54-205ENST00000507257 ADGRB1O14514 1584 aa22.34■■□□□ 1.17
NUP54-205ENST00000507257 SKOR2Q2VWA4 1001 aaPredicted RBP22.34■■□□□ 1.17
NUP54-205ENST00000507257 BCL2L13Q9BXK5 485 aa22.34■■□□□ 1.17
NUP54-205ENST00000507257 UGGT1Q9NYU2 1555 aa22.34■■□□□ 1.17
NUP54-205ENST00000507257 MTHFSP49914 203 aa22.33■■□□□ 1.17
NUP54-205ENST00000507257 GZF1Q9H116 711 aaPredicted RBP22.33■■□□□ 1.17
NUP54-205ENST00000507257 IL16Q14005 1332 aa22.33■■□□□ 1.17
NUP54-205ENST00000507257 ABCA9Q8IUA7 1624 aa22.33■■□□□ 1.16
NUP54-205ENST00000507257 PPLO60437 1756 aa22.32■■□□□ 1.16
NUP54-205ENST00000507257 ESPNB1AK53 854 aa22.32■■□□□ 1.16
NUP54-205ENST00000507257 ABCC11Q96J66 1382 aa22.32■■□□□ 1.16
NUP54-205ENST00000507257 HSP90AA1P07900 732 aaKnown RBP22.31■■□□□ 1.16
NUP54-205ENST00000507257 NOS1P29475 1434 aa22.31■■□□□ 1.16
NUP54-205ENST00000507257 ATF7IPQ6VMQ6 1270 aa22.3■■□□□ 1.16
NUP54-205ENST00000507257 SPRYD3Q8NCJ5 442 aa22.3■■□□□ 1.16
NUP54-205ENST00000507257 GBP4Q96PP9 640 aa22.3■■□□□ 1.16
NUP54-205ENST00000507257 TRIM27P14373 513 aa22.29■■□□□ 1.16
NUP54-205ENST00000507257 ERCC6L2Q5T890 1561 aa22.29■■□□□ 1.16
NUP54-205ENST00000507257 PPRC1Q5VV67 1664 aaKnown RBP22.29■■□□□ 1.16
NUP54-205ENST00000507257 REREQ9P2R6 1566 aa22.29■■□□□ 1.16
NUP54-205ENST00000507257 ANKRD36BQ8N2N9 1353 aa22.29■■□□□ 1.16
NUP54-205ENST00000507257 AFAP1Q8N556 730 aa22.29■■□□□ 1.16
NUP54-205ENST00000507257 CFAP74Q9C0B2 1584 aa22.28■■□□□ 1.16
NUP54-205ENST00000507257 KIF16BQ96L93 1317 aa22.28■■□□□ 1.16
NUP54-205ENST00000507257 RAB3GAP1Q15042 981 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms