RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.01□□□□□ -0.49
PDGFC-205ENST00000506880 ZEB1P37275 1124 aaPredicted RBP12.01□□□□□ -0.49
PDGFC-205ENST00000506880 PUS7Q96PZ0 661 aaKnown RBP12.01□□□□□ -0.49
PDGFC-205ENST00000506880 ROBO2Q9HCK4 1378 aa12.01□□□□□ -0.49
PDGFC-205ENST00000506880 ANKARQ7Z5J8 1434 aa12□□□□□ -0.49
PDGFC-205ENST00000506880 NALCNQ8IZF0 1738 aa12□□□□□ -0.49
PDGFC-205ENST00000506880 ATF3P18847 181 aa11.98□□□□□ -0.49
PDGFC-205ENST00000506880 FBXO41Q8TF61 875 aa11.98□□□□□ -0.49
PDGFC-205ENST00000506880 ITSN1Q15811 1721 aa11.97□□□□□ -0.49
PDGFC-205ENST00000506880 CENPJQ9HC77 1338 aaPredicted RBP11.97□□□□□ -0.49
PDGFC-205ENST00000506880 TMEM132EQ6IEE7 984 aa11.97□□□□□ -0.49
PDGFC-205ENST00000506880 CARD11Q9BXL7 1154 aa11.97□□□□□ -0.49
PDGFC-205ENST00000506880 POGKQ9P215 609 aa11.97□□□□□ -0.49
PDGFC-205ENST00000506880 FMN2Q9NZ56 1722 aa11.97□□□□□ -0.49
PDGFC-205ENST00000506880 NBPF8Q3BBV2 869 aa11.96□□□□□ -0.49
PDGFC-205ENST00000506880 KIF1AQ12756 1690 aa11.96□□□□□ -0.5
PDGFC-205ENST00000506880 QRICH2Q9H0J4 1663 aa11.95□□□□□ -0.5
PDGFC-205ENST00000506880 CDCA8Q53HL2 280 aa11.95□□□□□ -0.5
PDGFC-205ENST00000506880 C14orf37Q86TY3 774 aa11.95□□□□□ -0.5
PDGFC-205ENST00000506880 BRD4O60885 1362 aaPredicted RBP11.94□□□□□ -0.5
PDGFC-205ENST00000506880 NINLQ9Y2I6 1382 aa11.94□□□□□ -0.5
PDGFC-205ENST00000506880 NBPF1Q3BBV0 1214 aa11.94□□□□□ -0.5
PDGFC-205ENST00000506880 PRAM1Q96QH2 718 aa11.94□□□□□ -0.5
PDGFC-205ENST00000506880 TRAK1Q9UPV9 953 aa11.94□□□□□ -0.5
PDGFC-205ENST00000506880 TULP4Q9NRJ4 1543 aa11.94□□□□□ -0.5
PDGFC-205ENST00000506880 SLAIN2Q9P270 581 aa11.93□□□□□ -0.5
PDGFC-205ENST00000506880 STK26Q9P289 416 aa11.93□□□□□ -0.5
PDGFC-205ENST00000506880 MST1RQ04912 1400 aa11.93□□□□□ -0.5
PDGFC-205ENST00000506880 EVC2Q86UK5 1308 aa11.92□□□□□ -0.5
PDGFC-205ENST00000506880 AHDC1Q5TGY3 1603 aaPredicted RBP11.92□□□□□ -0.5
PDGFC-205ENST00000506880 ATAD2Q6PL18 1390 aa11.92□□□□□ -0.5
PDGFC-205ENST00000506880 UBAP1LF5GYI3 381 aa11.91□□□□□ -0.5
PDGFC-205ENST00000506880 WASLO00401 505 aaPredicted RBP11.91□□□□□ -0.5
PDGFC-205ENST00000506880 USP47Q96K76 1375 aa11.91□□□□□ -0.5
PDGFC-205ENST00000506880 C1orf167Q5SNV9 1468 aa11.9□□□□□ -0.5
PDGFC-205ENST00000506880 EIF4G2P78344 907 aaKnown RBP eCLIP11.9□□□□□ -0.5
PDGFC-205ENST00000506880 NHSL1Q5SYE7 1610 aa11.89□□□□□ -0.51
PDGFC-205ENST00000506880 WAPLQ7Z5K2 1190 aa11.89□□□□□ -0.51
PDGFC-205ENST00000506880 TOPAZ1Q8N9V7 1692 aa11.88□□□□□ -0.51
PDGFC-205ENST00000506880 ROBO1Q9Y6N7 1651 aa11.88□□□□□ -0.51
PDGFC-205ENST00000506880 CCDC61Q9Y6R9 512 aa11.88□□□□□ -0.51
PDGFC-205ENST00000506880 PLEKHH1Q9ULM0 1364 aa11.88□□□□□ -0.51
PDGFC-205ENST00000506880 NPHP3Q7Z494 1330 aa11.87□□□□□ -0.51
PDGFC-205ENST00000506880 TMF1P82094 1093 aa11.86□□□□□ -0.51
PDGFC-205ENST00000506880 ATP7BP35670 1465 aa11.86□□□□□ -0.51
PDGFC-205ENST00000506880 POLR3AO14802 1390 aaPredicted RBP11.85□□□□□ -0.51
PDGFC-205ENST00000506880 PLEKHG3A1L390 1219 aa11.85□□□□□ -0.51
PDGFC-205ENST00000506880 TESK2Q96S53 571 aa11.85□□□□□ -0.51
PDGFC-205ENST00000506880 USP32Q8NFA0 1604 aa11.85□□□□□ -0.51
PDGFC-205ENST00000506880 BRINP3Q76B58 766 aa11.84□□□□□ -0.51
PDGFC-205ENST00000506880 ZNF692Q9BU19 519 aaPredicted RBP11.84□□□□□ -0.51
PDGFC-205ENST00000506880 RGPD8O14715 1765 aaPredicted RBP11.84□□□□□ -0.51
PDGFC-205ENST00000506880 MINK1Q8N4C8 1332 aaPredicted RBP11.84□□□□□ -0.51
PDGFC-205ENST00000506880 SBNO1A3KN83 1393 aa11.83□□□□□ -0.52
PDGFC-205ENST00000506880 ST20-MTHFSA0A0A6YYL1 179 aa11.83□□□□□ -0.52
PDGFC-205ENST00000506880 PSME1Q06323 249 aa11.83□□□□□ -0.52
PDGFC-205ENST00000506880 CDK19Q9BWU1 502 aa11.83□□□□□ -0.52
PDGFC-205ENST00000506880 SOS2Q07890 1332 aaPredicted RBP11.83□□□□□ -0.52
PDGFC-205ENST00000506880 PHLPP1O60346 1717 aa11.83□□□□□ -0.52
PDGFC-205ENST00000506880 NUDT16Q96DE0 195 aaKnown RBP11.82□□□□□ -0.52
PDGFC-205ENST00000506880 PHF8Q9UPP1 1060 aa11.82□□□□□ -0.52
PDGFC-205ENST00000506880 SHPRHQ149N8 1683 aa11.81□□□□□ -0.52
PDGFC-205ENST00000506880 SRPK2P78362 688 aaKnown RBP11.81□□□□□ -0.52
PDGFC-205ENST00000506880 MAPK8IP2Q13387 824 aaPredicted RBP11.81□□□□□ -0.52
PDGFC-205ENST00000506880 LRRC59Q96AG4 307 aaKnown RBP11.81□□□□□ -0.52
PDGFC-205ENST00000506880 COL16A1Q07092 1604 aaPredicted RBP11.81□□□□□ -0.52
PDGFC-205ENST00000506880 ARHGEF10O15013 1369 aa11.8□□□□□ -0.52
PDGFC-205ENST00000506880 AKAP12Q02952 1782 aa11.8□□□□□ -0.52
PDGFC-205ENST00000506880 ESCO1Q5FWF5 840 aa11.8□□□□□ -0.52
PDGFC-205ENST00000506880 JCADQ9P266 1359 aa11.79□□□□□ -0.52
PDGFC-205ENST00000506880 COL22A1Q8NFW1 1626 aaPredicted RBP11.79□□□□□ -0.52
PDGFC-205ENST00000506880 PXDNQ92626 1479 aa11.79□□□□□ -0.52
PDGFC-205ENST00000506880 SAFB2Q14151 953 aaKnown RBP eCLIP11.79□□□□□ -0.52
PDGFC-205ENST00000506880 TERF2IPQ9NYB0 399 aa11.79□□□□□ -0.52
PDGFC-205ENST00000506880 CPSF1Q10570 1443 aaKnown RBP11.78□□□□□ -0.52
PDGFC-205ENST00000506880 PPIP5K1Q6PFW1 1433 aa11.78□□□□□ -0.52
PDGFC-205ENST00000506880 RBM33Q96EV2 1170 aaKnown RBP11.78□□□□□ -0.52
PDGFC-205ENST00000506880 SPATA31A6Q5VVP1 1343 aa11.78□□□□□ -0.52
PDGFC-205ENST00000506880 MON2Q7Z3U7 1717 aa11.77□□□□□ -0.52
PDGFC-205ENST00000506880 HIRIP3Q9BW71 556 aaPredicted RBP11.77□□□□□ -0.53
PDGFC-205ENST00000506880 TTC21AQ8NDW8 1320 aa11.77□□□□□ -0.53
PDGFC-205ENST00000506880 PRR36Q9H6K5 1346 aa11.77□□□□□ -0.53
PDGFC-205ENST00000506880 USP54Q70EL1 1684 aa11.77□□□□□ -0.53
PDGFC-205ENST00000506880 TRPM3Q9HCF6 1732 aaPredicted RBP11.77□□□□□ -0.53
PDGFC-205ENST00000506880 MED1Q15648 1581 aaPredicted RBP11.76□□□□□ -0.53
PDGFC-205ENST00000506880 HSPA5P11021 654 aaKnown RBP11.76□□□□□ -0.53
PDGFC-205ENST00000506880 PIP4K2BP78356 416 aa11.76□□□□□ -0.53
PDGFC-205ENST00000506880 NGDNQ8NEJ9 315 aaKnown RBP11.76□□□□□ -0.53
PDGFC-205ENST00000506880 ANKRD36BQ8N2N9 1353 aa11.76□□□□□ -0.53
PDGFC-205ENST00000506880 TNS3Q68CZ2 1445 aa11.76□□□□□ -0.53
PDGFC-205ENST00000506880 ALS2Q96Q42 1657 aa11.75□□□□□ -0.53
PDGFC-205ENST00000506880 HDGFL2Q7Z4V5 671 aaPredicted RBP11.75□□□□□ -0.53
PDGFC-205ENST00000506880 ORAI2Q96SN7 254 aa11.75□□□□□ -0.53
PDGFC-205ENST00000506880 USP6P35125 1406 aa11.75□□□□□ -0.53
PDGFC-205ENST00000506880 EDC4Q6P2E9 1401 aaKnown RBP11.75□□□□□ -0.53
PDGFC-205ENST00000506880 SOCS7O14512 581 aa11.74□□□□□ -0.53
PDGFC-205ENST00000506880 SPATA31A3Q5VYP0 1347 aa11.74□□□□□ -0.53
PDGFC-205ENST00000506880 SCAF1Q9H7N4 1312 aaKnown RBP11.74□□□□□ -0.53
PDGFC-205ENST00000506880 FOXO3O43524 673 aa11.73□□□□□ -0.53
PDGFC-205ENST00000506880 ACEP12821 1306 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms