RNA–Protein interactions for RNA: ENST00000505010.5

TPM3-218, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-218ENST00000505010 CARD11Q9BXL7 1154 aa13.18□□□□□ -0.3
TPM3-218ENST00000505010 CHD2O14647 1828 aaKnown RBP13.18□□□□□ -0.3
TPM3-218ENST00000505010 AHDC1Q5TGY3 1603 aaPredicted RBP13.17□□□□□ -0.3
TPM3-218ENST00000505010 RIMS2Q9UQ26 1411 aa13.17□□□□□ -0.3
TPM3-218ENST00000505010 HSPA5P11021 654 aaKnown RBP13.17□□□□□ -0.3
TPM3-218ENST00000505010 BRINP3Q76B58 766 aa13.17□□□□□ -0.3
TPM3-218ENST00000505010 GPRASP1Q5JY77 1395 aa13.17□□□□□ -0.3
TPM3-218ENST00000505010 SETBP1Q9Y6X0 1596 aa13.16□□□□□ -0.3
TPM3-218ENST00000505010 ZFYVE9O95405 1425 aa13.16□□□□□ -0.3
TPM3-218ENST00000505010 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.16□□□□□ -0.3
TPM3-218ENST00000505010 C8orf37Q96NL8 207 aa13.16□□□□□ -0.3
TPM3-218ENST00000505010 ZRANB1Q9UGI0 708 aa13.16□□□□□ -0.3
TPM3-218ENST00000505010 NBPF1Q3BBV0 1214 aa13.15□□□□□ -0.3
TPM3-218ENST00000505010 LRRC59Q96AG4 307 aaKnown RBP13.15□□□□□ -0.3
TPM3-218ENST00000505010 NGLY1Q96IV0 654 aa13.15□□□□□ -0.3
TPM3-218ENST00000505010 RGS12O14924 1447 aa13.14□□□□□ -0.31
TPM3-218ENST00000505010 VGFO15240 615 aaPredicted RBP13.14□□□□□ -0.31
TPM3-218ENST00000505010 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.13□□□□□ -0.31
TPM3-218ENST00000505010 NRXN3Q9Y4C0 1643 aa13.13□□□□□ -0.31
TPM3-218ENST00000505010 ADGRB1O14514 1584 aa13.12□□□□□ -0.31
TPM3-218ENST00000505010 ATAD2Q6PL18 1390 aa13.12□□□□□ -0.31
TPM3-218ENST00000505010 PIK3R4Q99570 1358 aa13.12□□□□□ -0.31
TPM3-218ENST00000505010 CFAP70Q5T0N1 1121 aa13.12□□□□□ -0.31
TPM3-218ENST00000505010 AMOTL2Q9Y2J4 779 aa13.12□□□□□ -0.31
TPM3-218ENST00000505010 DIP2AQ14689 1571 aa13.11□□□□□ -0.31
TPM3-218ENST00000505010 ASXL1Q8IXJ9 1541 aa13.11□□□□□ -0.31
TPM3-218ENST00000505010 ARHGEF28Q8N1W1 1705 aaKnown RBP13.1□□□□□ -0.31
TPM3-218ENST00000505010 EIF3AQ14152 1382 aaKnown RBP13.09□□□□□ -0.31
TPM3-218ENST00000505010 QRICH2Q9H0J4 1663 aa13.09□□□□□ -0.31
TPM3-218ENST00000505010 ADAMTS2O95450 1211 aa13.09□□□□□ -0.31
TPM3-218ENST00000505010 ADAMTS13Q76LX8 1427 aa13.09□□□□□ -0.31
TPM3-218ENST00000505010 C14orf93Q9H972 538 aaKnown RBP13.09□□□□□ -0.31
TPM3-218ENST00000505010 DCCP43146 1447 aa13.07□□□□□ -0.32
TPM3-218ENST00000505010 DIEXFQ68CQ4 756 aaKnown RBP13.07□□□□□ -0.32
TPM3-218ENST00000505010 USP21Q9UK80 565 aa13.07□□□□□ -0.32
TPM3-218ENST00000505010 EP400Q96L91 3159 aa13.06□□□□□ -0.32
TPM3-218ENST00000505010 ST20-MTHFSA0A0A6YYL1 179 aa13.06□□□□□ -0.32
TPM3-218ENST00000505010 CCDC125Q86Z20 511 aa13.06□□□□□ -0.32
TPM3-218ENST00000505010 DDX17Q92841 729 aaKnown RBP13.06□□□□□ -0.32
TPM3-218ENST00000505010 TRPC5Q9UL62 973 aaPredicted RBP13.06□□□□□ -0.32
TPM3-218ENST00000505010 PNPLA6Q8IY17 1366 aa13.06□□□□□ -0.32
TPM3-218ENST00000505010 KNDC1Q76NI1 1749 aa13.05□□□□□ -0.32
TPM3-218ENST00000505010 CCDC7Q96M83 1385 aa13.05□□□□□ -0.32
TPM3-218ENST00000505010 TMEM132EQ6IEE7 984 aa13.04□□□□□ -0.32
TPM3-218ENST00000505010 WASHC2AQ641Q2 1341 aa13.04□□□□□ -0.32
TPM3-218ENST00000505010 MST1RQ04912 1400 aa13.04□□□□□ -0.32
TPM3-218ENST00000505010 PTPRUQ92729 1446 aa13.04□□□□□ -0.32
TPM3-218ENST00000505010 KIF7Q2M1P5 1343 aa13.03□□□□□ -0.32
TPM3-218ENST00000505010 FNBP4Q8N3X1 1017 aaPredicted RBP13.02□□□□□ -0.33
TPM3-218ENST00000505010 YTHDC2Q9H6S0 1430 aaKnown RBP13.02□□□□□ -0.33
TPM3-218ENST00000505010 NHSL1Q5SYE7 1610 aa13.02□□□□□ -0.33
TPM3-218ENST00000505010 C11orf95C9JLR9 678 aaPredicted RBP13.01□□□□□ -0.33
TPM3-218ENST00000505010 DDX10Q13206 875 aaKnown RBP13.01□□□□□ -0.33
TPM3-218ENST00000505010 POLR3GLQ9BT43 218 aa13.01□□□□□ -0.33
TPM3-218ENST00000505010 TRAK1Q9UPV9 953 aa13.01□□□□□ -0.33
TPM3-218ENST00000505010 DLC1Q96QB1 1528 aa12.99□□□□□ -0.33
TPM3-218ENST00000505010 CENPJQ9HC77 1338 aaPredicted RBP12.99□□□□□ -0.33
TPM3-218ENST00000505010 TESK2Q96S53 571 aa12.99□□□□□ -0.33
TPM3-218ENST00000505010 STK26Q9P289 416 aa12.99□□□□□ -0.33
TPM3-218ENST00000505010 LRPPRCP42704 1394 aaKnown RBP12.98□□□□□ -0.33
TPM3-218ENST00000505010 TMF1P82094 1093 aa12.98□□□□□ -0.33
TPM3-218ENST00000505010 METP08581 1390 aa12.97□□□□□ -0.33
TPM3-218ENST00000505010 MYOM1P52179 1685 aa12.97□□□□□ -0.33
TPM3-218ENST00000505010 PTCH1Q13635 1447 aa12.96□□□□□ -0.33
TPM3-218ENST00000505010 XRN1Q8IZH2 1706 aaKnown RBP12.96□□□□□ -0.33
TPM3-218ENST00000505010 SBNO2Q9Y2G9 1366 aa12.96□□□□□ -0.33
TPM3-218ENST00000505010 SOS2Q07890 1332 aaPredicted RBP12.96□□□□□ -0.33
TPM3-218ENST00000505010 ATRNO75882 1429 aa12.96□□□□□ -0.34
TPM3-218ENST00000505010 ADGRL3Q9HAR2 1447 aa12.96□□□□□ -0.34
TPM3-218ENST00000505010 TULP4Q9NRJ4 1543 aa12.95□□□□□ -0.34
TPM3-218ENST00000505010 GJD4Q96KN9 370 aaPredicted RBP12.95□□□□□ -0.34
TPM3-218ENST00000505010 ORAI2Q96SN7 254 aa12.95□□□□□ -0.34
TPM3-218ENST00000505010 C1orf167Q5SNV9 1468 aa12.95□□□□□ -0.34
TPM3-218ENST00000505010 TECPR2O15040 1411 aa12.94□□□□□ -0.34
TPM3-218ENST00000505010 POGKQ9P215 609 aa12.93□□□□□ -0.34
TPM3-218ENST00000505010 ABCC11Q96J66 1382 aa12.93□□□□□ -0.34
TPM3-218ENST00000505010 BLMP54132 1417 aaPredicted RBP12.92□□□□□ -0.34
TPM3-218ENST00000505010 SF3B2Q13435 895 aaKnown RBP12.92□□□□□ -0.34
TPM3-218ENST00000505010 SAFB2Q14151 953 aaKnown RBP eCLIP12.92□□□□□ -0.34
TPM3-218ENST00000505010 CDCA8Q53HL2 280 aa12.92□□□□□ -0.34
TPM3-218ENST00000505010 PRAM1Q96QH2 718 aa12.92□□□□□ -0.34
TPM3-218ENST00000505010 SLC24A1O60721 1099 aa12.91□□□□□ -0.34
TPM3-218ENST00000505010 DEFB132Q7Z7B7 95 aa12.91□□□□□ -0.34
TPM3-218ENST00000505010 BCL9LQ86UU0 1499 aa12.91□□□□□ -0.34
TPM3-218ENST00000505010 PLEKHH1Q9ULM0 1364 aa12.9□□□□□ -0.34
TPM3-218ENST00000505010 ADGRB2O60241 1585 aa12.89□□□□□ -0.35
TPM3-218ENST00000505010 EVC2Q86UK5 1308 aa12.88□□□□□ -0.35
TPM3-218ENST00000505010 MINK1Q8N4C8 1332 aaPredicted RBP12.88□□□□□ -0.35
TPM3-218ENST00000505010 MIER1Q8N108 512 aa12.88□□□□□ -0.35
TPM3-218ENST00000505010 ROBO2Q9HCK4 1378 aa12.88□□□□□ -0.35
TPM3-218ENST00000505010 NALCNQ8IZF0 1738 aa12.88□□□□□ -0.35
TPM3-218ENST00000505010 NPHP3Q7Z494 1330 aa12.88□□□□□ -0.35
TPM3-218ENST00000505010 ESCO1Q5FWF5 840 aa12.87□□□□□ -0.35
TPM3-218ENST00000505010 WAPLQ7Z5K2 1190 aa12.87□□□□□ -0.35
TPM3-218ENST00000505010 UNC5CLQ8IV45 518 aa12.87□□□□□ -0.35
TPM3-218ENST00000505010 COL22A1Q8NFW1 1626 aaPredicted RBP12.85□□□□□ -0.35
TPM3-218ENST00000505010 ANP32CO43423 234 aa12.85□□□□□ -0.35
TPM3-218ENST00000505010 SIRT1Q96EB6 747 aa12.85□□□□□ -0.35
TPM3-218ENST00000505010 PSDA5PKW4 1024 aaPredicted RBP12.84□□□□□ -0.35
TPM3-218ENST00000505010 FOXO3O43524 673 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms