RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 ARHGEF28Q8N1W1 1705 aaKnown RBP17.07■□□□□ 0.32
PDLIM5-208ENST00000504489 PTCH1Q13635 1447 aa17.06■□□□□ 0.32
PDLIM5-208ENST00000504489 NCOA3Q9Y6Q9 1424 aa17.05■□□□□ 0.32
PDLIM5-208ENST00000504489 NBPF8Q3BBV2 869 aa17.05■□□□□ 0.32
PDLIM5-208ENST00000504489 DLC1Q96QB1 1528 aa17.05■□□□□ 0.32
PDLIM5-208ENST00000504489 NALCNQ8IZF0 1738 aa17.04■□□□□ 0.32
PDLIM5-208ENST00000504489 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.04■□□□□ 0.32
PDLIM5-208ENST00000504489 TMEM94Q12767 1356 aa17.03■□□□□ 0.32
PDLIM5-208ENST00000504489 ROBO2Q9HCK4 1378 aa17.03■□□□□ 0.32
PDLIM5-208ENST00000504489 SIRT1Q96EB6 747 aa17.03■□□□□ 0.32
PDLIM5-208ENST00000504489 STK26Q9P289 416 aa17.03■□□□□ 0.32
PDLIM5-208ENST00000504489 NBPF1Q3BBV0 1214 aa17.02■□□□□ 0.32
PDLIM5-208ENST00000504489 FAM135BQ49AJ0 1406 aa17.02■□□□□ 0.31
PDLIM5-208ENST00000504489 RALGAPBQ86X10 1494 aa17.01■□□□□ 0.31
PDLIM5-208ENST00000504489 RBM33Q96EV2 1170 aaKnown RBP16.99■□□□□ 0.31
PDLIM5-208ENST00000504489 GPRASP1Q5JY77 1395 aa16.99■□□□□ 0.31
PDLIM5-208ENST00000504489 ROCK2O75116 1388 aaKnown RBP16.98■□□□□ 0.31
PDLIM5-208ENST00000504489 ADGRL3Q9HAR2 1447 aa16.97■□□□□ 0.31
PDLIM5-208ENST00000504489 C19orf44Q9H6X5 657 aa16.97■□□□□ 0.31
PDLIM5-208ENST00000504489 TRAK1Q9UPV9 953 aa16.97■□□□□ 0.31
PDLIM5-208ENST00000504489 MSH6P52701 1360 aa16.97■□□□□ 0.31
PDLIM5-208ENST00000504489 WAPLQ7Z5K2 1190 aa16.96■□□□□ 0.31
PDLIM5-208ENST00000504489 QRICH2Q9H0J4 1663 aa16.96■□□□□ 0.31
PDLIM5-208ENST00000504489 PLEKHH1Q9ULM0 1364 aa16.95■□□□□ 0.3
PDLIM5-208ENST00000504489 ZBTB22O15209 634 aa16.95■□□□□ 0.3
PDLIM5-208ENST00000504489 ABCB7O75027 752 aa16.95■□□□□ 0.3
PDLIM5-208ENST00000504489 C14orf37Q86TY3 774 aa16.95■□□□□ 0.3
PDLIM5-208ENST00000504489 DCCP43146 1447 aa16.95■□□□□ 0.3
PDLIM5-208ENST00000504489 RGPD8O14715 1765 aaPredicted RBP16.94■□□□□ 0.3
PDLIM5-208ENST00000504489 PRAM1Q96QH2 718 aa16.94■□□□□ 0.3
PDLIM5-208ENST00000504489 CDC42BPGQ6DT37 1551 aa16.94■□□□□ 0.3
PDLIM5-208ENST00000504489 FMN2Q9NZ56 1722 aa16.93■□□□□ 0.3
PDLIM5-208ENST00000504489 POGKQ9P215 609 aa16.93■□□□□ 0.3
PDLIM5-208ENST00000504489 ADGRB2O60241 1585 aa16.93■□□□□ 0.3
PDLIM5-208ENST00000504489 CARD11Q9BXL7 1154 aa16.92■□□□□ 0.3
PDLIM5-208ENST00000504489 TOM1O60784 492 aa16.91■□□□□ 0.3
PDLIM5-208ENST00000504489 CADPS2Q86UW7 1296 aa16.91■□□□□ 0.3
PDLIM5-208ENST00000504489 UBAP1LF5GYI3 381 aa16.9■□□□□ 0.3
PDLIM5-208ENST00000504489 ATF3P18847 181 aa16.9■□□□□ 0.3
PDLIM5-208ENST00000504489 FBXO41Q8TF61 875 aa16.89■□□□□ 0.29
PDLIM5-208ENST00000504489 EIF3AQ14152 1382 aaKnown RBP16.89■□□□□ 0.29
PDLIM5-208ENST00000504489 SAFB2Q14151 953 aaKnown RBP eCLIP16.88■□□□□ 0.29
PDLIM5-208ENST00000504489 CENPJQ9HC77 1338 aaPredicted RBP16.88■□□□□ 0.29
PDLIM5-208ENST00000504489 ROBO1Q9Y6N7 1651 aa16.87■□□□□ 0.29
PDLIM5-208ENST00000504489 SLAIN2Q9P270 581 aa16.86■□□□□ 0.29
PDLIM5-208ENST00000504489 MST1RQ04912 1400 aa16.86■□□□□ 0.29
PDLIM5-208ENST00000504489 ITSN1Q15811 1721 aa16.85■□□□□ 0.29
PDLIM5-208ENST00000504489 MINK1Q8N4C8 1332 aaPredicted RBP16.85■□□□□ 0.29
PDLIM5-208ENST00000504489 USP32Q8NFA0 1604 aa16.84■□□□□ 0.29
PDLIM5-208ENST00000504489 C1orf167Q5SNV9 1468 aa16.82■□□□□ 0.28
PDLIM5-208ENST00000504489 USP47Q96K76 1375 aa16.82■□□□□ 0.28
PDLIM5-208ENST00000504489 SBNO2Q9Y2G9 1366 aa16.82■□□□□ 0.28
PDLIM5-208ENST00000504489 HIRIP3Q9BW71 556 aaPredicted RBP16.82■□□□□ 0.28
PDLIM5-208ENST00000504489 WASLO00401 505 aaPredicted RBP16.81■□□□□ 0.28
PDLIM5-208ENST00000504489 PIP4K2BP78356 416 aa16.81■□□□□ 0.28
PDLIM5-208ENST00000504489 NHSL1Q5SYE7 1610 aa16.81■□□□□ 0.28
PDLIM5-208ENST00000504489 TULP4Q9NRJ4 1543 aa16.8■□□□□ 0.28
PDLIM5-208ENST00000504489 KIF1AQ12756 1690 aa16.8■□□□□ 0.28
PDLIM5-208ENST00000504489 ANKARQ7Z5J8 1434 aa16.79■□□□□ 0.28
PDLIM5-208ENST00000504489 TOPAZ1Q8N9V7 1692 aa16.79■□□□□ 0.28
PDLIM5-208ENST00000504489 PHLPP1O60346 1717 aa16.79■□□□□ 0.28
PDLIM5-208ENST00000504489 ST20-MTHFSA0A0A6YYL1 179 aa16.78■□□□□ 0.28
PDLIM5-208ENST00000504489 CDK19Q9BWU1 502 aa16.78■□□□□ 0.28
PDLIM5-208ENST00000504489 SLC24A1O60721 1099 aa16.77■□□□□ 0.28
PDLIM5-208ENST00000504489 EVC2Q86UK5 1308 aa16.76■□□□□ 0.27
PDLIM5-208ENST00000504489 NUTM2FA1L443 756 aa16.76■□□□□ 0.27
PDLIM5-208ENST00000504489 BRINP3Q76B58 766 aa16.76■□□□□ 0.27
PDLIM5-208ENST00000504489 TESK2Q96S53 571 aa16.76■□□□□ 0.27
PDLIM5-208ENST00000504489 AHDC1Q5TGY3 1603 aaPredicted RBP16.76■□□□□ 0.27
PDLIM5-208ENST00000504489 ATP7BP35670 1465 aa16.75■□□□□ 0.27
PDLIM5-208ENST00000504489 EIF4G2P78344 907 aaKnown RBP eCLIP16.75■□□□□ 0.27
PDLIM5-208ENST00000504489 ORAI2Q96SN7 254 aa16.75■□□□□ 0.27
PDLIM5-208ENST00000504489 PRR36Q9H6K5 1346 aa16.74■□□□□ 0.27
PDLIM5-208ENST00000504489 ESCO1Q5FWF5 840 aa16.74■□□□□ 0.27
PDLIM5-208ENST00000504489 ATF5Q9Y2D1 282 aaPredicted RBP16.74■□□□□ 0.27
PDLIM5-208ENST00000504489 ZEB1P37275 1124 aaPredicted RBP16.73■□□□□ 0.27
PDLIM5-208ENST00000504489 POLA2Q14181 598 aa16.73■□□□□ 0.27
PDLIM5-208ENST00000504489 NUDT16Q96DE0 195 aaKnown RBP16.73■□□□□ 0.27
PDLIM5-208ENST00000504489 COL16A1Q07092 1604 aaPredicted RBP16.72■□□□□ 0.27
PDLIM5-208ENST00000504489 SRPK2P78362 688 aaKnown RBP16.72■□□□□ 0.27
PDLIM5-208ENST00000504489 ILDR1Q86SU0 546 aaPredicted RBP16.72■□□□□ 0.27
PDLIM5-208ENST00000504489 AKAP12Q02952 1782 aa16.72■□□□□ 0.27
PDLIM5-208ENST00000504489 HSPA5P11021 654 aaKnown RBP16.71■□□□□ 0.27
PDLIM5-208ENST00000504489 PUS7Q96PZ0 661 aaKnown RBP16.71■□□□□ 0.27
PDLIM5-208ENST00000504489 CABP2Q9NPB3 220 aa16.7■□□□□ 0.26
PDLIM5-208ENST00000504489 PHF8Q9UPP1 1060 aa16.7■□□□□ 0.26
PDLIM5-208ENST00000504489 CCDC61Q9Y6R9 512 aa16.7■□□□□ 0.26
PDLIM5-208ENST00000504489 HSPA1LP34931 641 aa16.69■□□□□ 0.26
PDLIM5-208ENST00000504489 ATAD2Q6PL18 1390 aa16.68■□□□□ 0.26
PDLIM5-208ENST00000504489 TMF1P82094 1093 aa16.68■□□□□ 0.26
PDLIM5-208ENST00000504489 NPHP3Q7Z494 1330 aa16.68■□□□□ 0.26
PDLIM5-208ENST00000504489 TRPM3Q9HCF6 1732 aaPredicted RBP16.67■□□□□ 0.26
PDLIM5-208ENST00000504489 PLEKHG3A1L390 1219 aa16.67■□□□□ 0.26
PDLIM5-208ENST00000504489 ATXN8OSP0DMR3 200 aa16.67■□□□□ 0.26
PDLIM5-208ENST00000504489 PXDNQ92626 1479 aa16.67■□□□□ 0.26
PDLIM5-208ENST00000504489 DISP3Q9P2K9 1392 aa16.66■□□□□ 0.26
PDLIM5-208ENST00000504489 SHPRHQ149N8 1683 aa16.66■□□□□ 0.26
PDLIM5-208ENST00000504489 FOXO3O43524 673 aa16.66■□□□□ 0.26
PDLIM5-208ENST00000504489 PPIP5K1Q6PFW1 1433 aa16.66■□□□□ 0.26
PDLIM5-208ENST00000504489 PMFBP1Q8TBY8 1022 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms