RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-231	ENST00000498751	ADGRF5	Q8IZF2	1346 aa		10.53	□□□□□ -0.72
SYNE1-231	ENST00000498751	PARD3	Q8TEW0	1356 aa		10.52	□□□□□ -0.72
SYNE1-231	ENST00000498751	DISP3	Q9P2K9	1392 aa		10.52	□□□□□ -0.72
SYNE1-231	ENST00000498751	VGF	O15240	615 aa	Predicted RBP	10.52	□□□□□ -0.73
SYNE1-231	ENST00000498751	RALBP1	Q15311	655 aa		10.52	□□□□□ -0.73
SYNE1-231	ENST00000498751	IDI1	Q13907	227 aa		10.51	□□□□□ -0.73
SYNE1-231	ENST00000498751	BRD4	O60885	1362 aa	Predicted RBP	10.51	□□□□□ -0.73
SYNE1-231	ENST00000498751	YTHDC1	Q96MU7	727 aa	Known RBP	10.5	□□□□□ -0.73
SYNE1-231	ENST00000498751	MYOM1	P52179	1685 aa		10.5	□□□□□ -0.73
SYNE1-231	ENST00000498751	CFAP70	Q5T0N1	1121 aa		10.49	□□□□□ -0.73
SYNE1-231	ENST00000498751	DCBLD2	Q96PD2	775 aa		10.49	□□□□□ -0.73
SYNE1-231	ENST00000498751	CLTC	Q00610	1675 aa	Known RBP	10.49	□□□□□ -0.73
SYNE1-231	ENST00000498751	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.48	□□□□□ -0.73
SYNE1-231	ENST00000498751	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.48	□□□□□ -0.73
SYNE1-231	ENST00000498751	LRPPRC	P42704	1394 aa	Known RBP	10.48	□□□□□ -0.73
SYNE1-231	ENST00000498751	A2ML1	A8K2U0	1454 aa		10.47	□□□□□ -0.73
SYNE1-231	ENST00000498751	ASXL1	Q8IXJ9	1541 aa		10.47	□□□□□ -0.73
SYNE1-231	ENST00000498751	GTF3C3	Q9Y5Q9	886 aa		10.46	□□□□□ -0.73
SYNE1-231	ENST00000498751	DLC1	Q96QB1	1528 aa		10.46	□□□□□ -0.74
SYNE1-231	ENST00000498751	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.45	□□□□□ -0.74
SYNE1-231	ENST00000498751	ZMYM3	Q14202	1370 aa		10.45	□□□□□ -0.74
SYNE1-231	ENST00000498751	PLEKHG5	O94827	1062 aa		10.45	□□□□□ -0.74
SYNE1-231	ENST00000498751	PLCD3	Q8N3E9	789 aa		10.45	□□□□□ -0.74
SYNE1-231	ENST00000498751	ZBED9	Q6R2W3	1325 aa		10.44	□□□□□ -0.74
SYNE1-231	ENST00000498751	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.44	□□□□□ -0.74
SYNE1-231	ENST00000498751	LHX8	Q68G74	356 aa		10.44	□□□□□ -0.74
SYNE1-231	ENST00000498751	RASEF	Q8IZ41	740 aa		10.44	□□□□□ -0.74
SYNE1-231	ENST00000498751	MS4A3	Q96HJ5	214 aa		10.44	□□□□□ -0.74
SYNE1-231	ENST00000498751	CCDC61	Q9Y6R9	512 aa		10.44	□□□□□ -0.74
SYNE1-231	ENST00000498751	SETD1A	O15047	1707 aa	Known RBP	10.44	□□□□□ -0.74
SYNE1-231	ENST00000498751	USP32	Q8NFA0	1604 aa		10.44	□□□□□ -0.74
SYNE1-231	ENST00000498751	NLRP1	Q9C000	1473 aa		10.43	□□□□□ -0.74
SYNE1-231	ENST00000498751	NINL	Q9Y2I6	1382 aa		10.43	□□□□□ -0.74
SYNE1-231	ENST00000498751	CCDC184	Q52MB2	194 aa		10.43	□□□□□ -0.74
SYNE1-231	ENST00000498751	NLRP13	Q86W25	1043 aa		10.43	□□□□□ -0.74
SYNE1-231	ENST00000498751	PNISR	Q8TF01	805 aa	Known RBP	10.43	□□□□□ -0.74
SYNE1-231	ENST00000498751	MRS2	Q9HD23	443 aa		10.43	□□□□□ -0.74
SYNE1-231	ENST00000498751	QRICH2	Q9H0J4	1663 aa		10.43	□□□□□ -0.74
SYNE1-231	ENST00000498751	ALK	Q9UM73	1620 aa		10.42	□□□□□ -0.74
SYNE1-231	ENST00000498751	MYO5B	Q9ULV0	1848 aa		10.42	□□□□□ -0.74
SYNE1-231	ENST00000498751	PTPRM	P28827	1452 aa		10.42	□□□□□ -0.74
SYNE1-231	ENST00000498751	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE1-231	ENST00000498751	SIRT1	Q96EB6	747 aa		10.41	□□□□□ -0.74
SYNE1-231	ENST00000498751	PANK3	Q9H999	370 aa		10.41	□□□□□ -0.74
SYNE1-231	ENST00000498751	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE1-231	ENST00000498751	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	10.4	□□□□□ -0.74
SYNE1-231	ENST00000498751	CFAP65	Q6ZU64	1925 aa	Known RBP	10.4	□□□□□ -0.74
SYNE1-231	ENST00000498751	TECPR2	O15040	1411 aa		10.4	□□□□□ -0.75
SYNE1-231	ENST00000498751	TULP4	Q9NRJ4	1543 aa		10.39	□□□□□ -0.75
SYNE1-231	ENST00000498751	KNDC1	Q76NI1	1749 aa		10.39	□□□□□ -0.75
SYNE1-231	ENST00000498751	NRXN3	Q9Y4C0	1643 aa		10.39	□□□□□ -0.75
SYNE1-231	ENST00000498751	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.39	□□□□□ -0.75
SYNE1-231	ENST00000498751	RIMS2	Q9UQ26	1411 aa		10.39	□□□□□ -0.75
SYNE1-231	ENST00000498751	ABCC11	Q96J66	1382 aa		10.39	□□□□□ -0.75
SYNE1-231	ENST00000498751	UBR1	Q8IWV7	1749 aa		10.38	□□□□□ -0.75
SYNE1-231	ENST00000498751	CHGA	P10645	457 aa	Known RBP	10.38	□□□□□ -0.75
SYNE1-231	ENST00000498751	TNR	Q92752	1358 aa		10.38	□□□□□ -0.75
SYNE1-231	ENST00000498751	SLIT1	O75093	1534 aa		10.38	□□□□□ -0.75
SYNE1-231	ENST00000498751	ARHGAP23	Q9P227	1491 aa		10.37	□□□□□ -0.75
SYNE1-231	ENST00000498751	HDGF	P51858	240 aa	Known RBP	10.37	□□□□□ -0.75
SYNE1-231	ENST00000498751	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
SYNE1-231	ENST00000498751	FAM135B	Q49AJ0	1406 aa		10.37	□□□□□ -0.75
SYNE1-231	ENST00000498751	NSD2	O96028	1365 aa		10.37	□□□□□ -0.75
SYNE1-231	ENST00000498751	MED14	O60244	1454 aa		10.36	□□□□□ -0.75
SYNE1-231	ENST00000498751	BLM	P54132	1417 aa	Predicted RBP	10.36	□□□□□ -0.75
SYNE1-231	ENST00000498751	NUBP1	P53384	320 aa		10.36	□□□□□ -0.75
SYNE1-231	ENST00000498751	TMC1	Q8TDI8	760 aa		10.36	□□□□□ -0.75
SYNE1-231	ENST00000498751	KIF12	Q96FN5	646 aa		10.36	□□□□□ -0.75
SYNE1-231	ENST00000498751	KNSTRN	Q9Y448	316 aa		10.36	□□□□□ -0.75
SYNE1-231	ENST00000498751	ANKRD36B	Q8N2N9	1353 aa		10.36	□□□□□ -0.75
SYNE1-231	ENST00000498751	TMEM2	Q9UHN6	1383 aa		10.36	□□□□□ -0.75
SYNE1-231	ENST00000498751	EVC2	Q86UK5	1308 aa		10.35	□□□□□ -0.75
SYNE1-231	ENST00000498751	CPS1	P31327	1500 aa		10.35	□□□□□ -0.75
SYNE1-231	ENST00000498751	ERICH6B	Q5W0A0	696 aa		10.35	□□□□□ -0.75
SYNE1-231	ENST00000498751	PELP1	Q8IZL8	1130 aa	Known RBP	10.35	□□□□□ -0.75
SYNE1-231	ENST00000498751	POLR3GL	Q9BT43	218 aa		10.35	□□□□□ -0.75
SYNE1-231	ENST00000498751	ATAD2	Q6PL18	1390 aa		10.35	□□□□□ -0.75
SYNE1-231	ENST00000498751	ESF1	Q9H501	851 aa	Known RBP	10.34	□□□□□ -0.75
SYNE1-231	ENST00000498751	TRAK1	Q9UPV9	953 aa		10.34	□□□□□ -0.75
SYNE1-231	ENST00000498751	C3	P01024	1663 aa		10.34	□□□□□ -0.75
SYNE1-231	ENST00000498751	SMG6	Q86US8	1419 aa	Known RBP	10.33	□□□□□ -0.76
SYNE1-231	ENST00000498751	TMEM132E	Q6IEE7	984 aa		10.33	□□□□□ -0.76
SYNE1-231	ENST00000498751	PLEKHG1	Q9ULL1	1385 aa		10.33	□□□□□ -0.76
SYNE1-231	ENST00000498751	ADGRB2	O60241	1585 aa		10.32	□□□□□ -0.76
SYNE1-231	ENST00000498751	DIP2A	Q14689	1571 aa		10.32	□□□□□ -0.76
SYNE1-231	ENST00000498751	POLR3A	O14802	1390 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-231	ENST00000498751	PDE3B	Q13370	1112 aa		10.32	□□□□□ -0.76
SYNE1-231	ENST00000498751	FAM9B	Q8IZU0	186 aa		10.32	□□□□□ -0.76
SYNE1-231	ENST00000498751	CARD14	Q9BXL6	1004 aa		10.32	□□□□□ -0.76
SYNE1-231	ENST00000498751	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE1-231	ENST00000498751	FBXO3	Q9UK99	471 aa		10.32	□□□□□ -0.76
SYNE1-231	ENST00000498751	FER1L4	A9Z1Z3	1794 aa		10.31	□□□□□ -0.76
SYNE1-231	ENST00000498751	MAP3K13	O43283	966 aa		10.31	□□□□□ -0.76
SYNE1-231	ENST00000498751	PPP2R1A	P30153	589 aa		10.31	□□□□□ -0.76
SYNE1-231	ENST00000498751	ASTL	Q6HA08	431 aa	Predicted RBP	10.31	□□□□□ -0.76
SYNE1-231	ENST00000498751	NGEF	Q8N5V2	710 aa		10.31	□□□□□ -0.76
SYNE1-231	ENST00000498751	ADAMTS13	Q76LX8	1427 aa		10.31	□□□□□ -0.76
SYNE1-231	ENST00000498751	RNF123	Q5XPI4	1314 aa		10.31	□□□□□ -0.76
SYNE1-231	ENST00000498751	ATP7B	P35670	1465 aa		10.3	□□□□□ -0.76
SYNE1-231	ENST00000498751	ATMIN	O43313	823 aa	Predicted RBP	10.3	□□□□□ -0.76

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