RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 USP47Q96K76 1375 aa16.81■□□□□ 0.28
CUX1-210ENST00000497815 MINK1Q8N4C8 1332 aaPredicted RBP16.81■□□□□ 0.28
CUX1-210ENST00000497815 CENPJQ9HC77 1338 aaPredicted RBP16.81■□□□□ 0.28
CUX1-210ENST00000497815 XIRP1Q702N8 1843 aaKnown RBP16.8■□□□□ 0.28
CUX1-210ENST00000497815 HIRIP3Q9BW71 556 aaPredicted RBP16.8■□□□□ 0.28
CUX1-210ENST00000497815 NALCNQ8IZF0 1738 aa16.79■□□□□ 0.28
CUX1-210ENST00000497815 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.79■□□□□ 0.28
CUX1-210ENST00000497815 ADGRL3Q9HAR2 1447 aa16.79■□□□□ 0.28
CUX1-210ENST00000497815 MSH6P52701 1360 aa16.78■□□□□ 0.28
CUX1-210ENST00000497815 NCOA3Q9Y6Q9 1424 aa16.78■□□□□ 0.28
CUX1-210ENST00000497815 ST20-MTHFSA0A0A6YYL1 179 aa16.77■□□□□ 0.28
CUX1-210ENST00000497815 C19orf44Q9H6X5 657 aa16.77■□□□□ 0.28
CUX1-210ENST00000497815 QRICH2Q9H0J4 1663 aa16.77■□□□□ 0.28
CUX1-210ENST00000497815 EIF4G2P78344 907 aaKnown RBP eCLIP16.76■□□□□ 0.271e-6■■■■■ 32.2
CUX1-210ENST00000497815 HSPA5P11021 654 aaKnown RBP16.75■□□□□ 0.27
CUX1-210ENST00000497815 ATF3P18847 181 aa16.75■□□□□ 0.27
CUX1-210ENST00000497815 NUTM2FA1L443 756 aa16.74■□□□□ 0.27
CUX1-210ENST00000497815 IQSEC2Q5JU85 1478 aa16.73■□□□□ 0.27
CUX1-210ENST00000497815 UBAP1LF5GYI3 381 aa16.72■□□□□ 0.27
CUX1-210ENST00000497815 CADPS2Q86UW7 1296 aa16.72■□□□□ 0.27
CUX1-210ENST00000497815 CDC42BPGQ6DT37 1551 aa16.72■□□□□ 0.27
CUX1-210ENST00000497815 WASLO00401 505 aaPredicted RBP16.71■□□□□ 0.27
CUX1-210ENST00000497815 ADGRB2O60241 1585 aa16.71■□□□□ 0.27
CUX1-210ENST00000497815 DCCP43146 1447 aa16.7■□□□□ 0.26
CUX1-210ENST00000497815 TESK2Q96S53 571 aa16.7■□□□□ 0.26
CUX1-210ENST00000497815 CDK19Q9BWU1 502 aa16.7■□□□□ 0.26
CUX1-210ENST00000497815 TOM1O60784 492 aa16.69■□□□□ 0.26
CUX1-210ENST00000497815 SRPK2P78362 688 aaKnown RBP16.69■□□□□ 0.26
CUX1-210ENST00000497815 TULP4Q9NRJ4 1543 aa16.69■□□□□ 0.26
CUX1-210ENST00000497815 EVC2Q86UK5 1308 aa16.69■□□□□ 0.26
CUX1-210ENST00000497815 SCAF1Q9H7N4 1312 aaKnown RBP16.69■□□□□ 0.26
CUX1-210ENST00000497815 PIP4K2BP78356 416 aa16.68■□□□□ 0.26
CUX1-210ENST00000497815 CABP2Q9NPB3 220 aa16.68■□□□□ 0.26
CUX1-210ENST00000497815 SLAIN2Q9P270 581 aa16.68■□□□□ 0.26
CUX1-210ENST00000497815 MST1RQ04912 1400 aa16.68■□□□□ 0.26
CUX1-210ENST00000497815 FMN2Q9NZ56 1722 aa16.67■□□□□ 0.26
CUX1-210ENST00000497815 SBNO2Q9Y2G9 1366 aa16.67■□□□□ 0.26
CUX1-210ENST00000497815 DISP3Q9P2K9 1392 aa16.65■□□□□ 0.26
CUX1-210ENST00000497815 TMF1P82094 1093 aa16.65■□□□□ 0.26
CUX1-210ENST00000497815 C1orf167Q5SNV9 1468 aa16.65■□□□□ 0.26
CUX1-210ENST00000497815 NUDT16Q96DE0 195 aaKnown RBP16.64■□□□□ 0.25
CUX1-210ENST00000497815 ORAI2Q96SN7 254 aa16.64■□□□□ 0.25
CUX1-210ENST00000497815 PRR36Q9H6K5 1346 aa16.64■□□□□ 0.25
CUX1-210ENST00000497815 ESCO1Q5FWF5 840 aa16.63■□□□□ 0.25
CUX1-210ENST00000497815 POLR3GLQ9BT43 218 aa16.63■□□□□ 0.25
CUX1-210ENST00000497815 USP32Q8NFA0 1604 aa16.63■□□□□ 0.25
CUX1-210ENST00000497815 SLC24A1O60721 1099 aa16.62■□□□□ 0.25
CUX1-210ENST00000497815 ANKARQ7Z5J8 1434 aa16.62■□□□□ 0.25
CUX1-210ENST00000497815 ATP7BP35670 1465 aa16.61■□□□□ 0.25
CUX1-210ENST00000497815 BRINP3Q76B58 766 aa16.6■□□□□ 0.25
CUX1-210ENST00000497815 PMFBP1Q8TBY8 1022 aa16.6■□□□□ 0.25
CUX1-210ENST00000497815 C11orf95C9JLR9 678 aaPredicted RBP16.59■□□□□ 0.25
CUX1-210ENST00000497815 CCDC61Q9Y6R9 512 aa16.59■□□□□ 0.25
CUX1-210ENST00000497815 ROBO1Q9Y6N7 1651 aa16.59■□□□□ 0.25
CUX1-210ENST00000497815 RGPD8O14715 1765 aaPredicted RBP16.59■□□□□ 0.25
CUX1-210ENST00000497815 CDCA8Q53HL2 280 aa16.58■□□□□ 0.24
CUX1-210ENST00000497815 TMC1Q8TDI8 760 aa16.58■□□□□ 0.24
CUX1-210ENST00000497815 PHF8Q9UPP1 1060 aa16.58■□□□□ 0.24
CUX1-210ENST00000497815 ATAD2Q6PL18 1390 aa16.58■□□□□ 0.24
CUX1-210ENST00000497815 PPIP5K1Q6PFW1 1433 aa16.58■□□□□ 0.24
CUX1-210ENST00000497815 DDX17Q92841 729 aaKnown RBP16.57■□□□□ 0.24
CUX1-210ENST00000497815 CABP1Q9NZU7 370 aa16.57■□□□□ 0.24
CUX1-210ENST00000497815 ILDR1Q86SU0 546 aaPredicted RBP16.56■□□□□ 0.24
CUX1-210ENST00000497815 ITSN1Q15811 1721 aa16.56■□□□□ 0.24
CUX1-210ENST00000497815 TOPAZ1Q8N9V7 1692 aa16.56■□□□□ 0.24
CUX1-210ENST00000497815 FOXO3O43524 673 aa16.55■□□□□ 0.24
CUX1-210ENST00000497815 NGDNQ8NEJ9 315 aaKnown RBP16.55■□□□□ 0.24
CUX1-210ENST00000497815 FBXO41Q8TF61 875 aa16.55■□□□□ 0.24
CUX1-210ENST00000497815 XPCQ01831 940 aaPredicted RBP16.54■□□□□ 0.24
CUX1-210ENST00000497815 PUS7Q96PZ0 661 aaKnown RBP16.54■□□□□ 0.24
CUX1-210ENST00000497815 KIF1AQ12756 1690 aa16.53■□□□□ 0.24
CUX1-210ENST00000497815 KIF7Q2M1P5 1343 aa16.53■□□□□ 0.24
CUX1-210ENST00000497815 SLC12A5Q9H2X9 1139 aa16.53■□□□□ 0.24
CUX1-210ENST00000497815 ACEP12821 1306 aa16.52■□□□□ 0.24
CUX1-210ENST00000497815 PLEKHG3A1L390 1219 aa16.52■□□□□ 0.24
CUX1-210ENST00000497815 WASHC2AQ641Q2 1341 aa16.51■□□□□ 0.23
CUX1-210ENST00000497815 PSME1Q06323 249 aa16.51■□□□□ 0.23
CUX1-210ENST00000497815 CCDC7Q96M83 1385 aa16.51■□□□□ 0.23
CUX1-210ENST00000497815 NPHP3Q7Z494 1330 aa16.5■□□□□ 0.23
CUX1-210ENST00000497815 HSPA1LP34931 641 aa16.49■□□□□ 0.23
CUX1-210ENST00000497815 KRT28Q7Z3Y7 464 aa16.49■□□□□ 0.23
CUX1-210ENST00000497815 POLR3AO14802 1390 aaPredicted RBP16.49■□□□□ 0.23
CUX1-210ENST00000497815 NHSL1Q5SYE7 1610 aa16.48■□□□□ 0.23
CUX1-210ENST00000497815 HDGFL2Q7Z4V5 671 aaPredicted RBP16.48■□□□□ 0.23
CUX1-210ENST00000497815 TERF2IPQ9NYB0 399 aa16.48■□□□□ 0.23
CUX1-210ENST00000497815 MYOM1P52179 1685 aa16.48■□□□□ 0.23
CUX1-210ENST00000497815 NINLQ9Y2I6 1382 aa16.48■□□□□ 0.23
CUX1-210ENST00000497815 AHDC1Q5TGY3 1603 aaPredicted RBP16.48■□□□□ 0.23
CUX1-210ENST00000497815 PHLPP1O60346 1717 aa16.48■□□□□ 0.23
CUX1-210ENST00000497815 A0A1W2PP64 1363 aa16.47■□□□□ 0.23
CUX1-210ENST00000497815 KTN1Q86UP2 1357 aaKnown RBP16.47■□□□□ 0.23
CUX1-210ENST00000497815 PXDNQ92626 1479 aa16.47■□□□□ 0.23
CUX1-210ENST00000497815 CD163L1Q9NR16 1453 aa16.47■□□□□ 0.23
CUX1-210ENST00000497815 PAK3O75914 559 aaPredicted RBP16.46■□□□□ 0.23
CUX1-210ENST00000497815 SOS2Q07890 1332 aaPredicted RBP16.45■□□□□ 0.22
CUX1-210ENST00000497815 CPSF1Q10570 1443 aaKnown RBP16.45■□□□□ 0.22
CUX1-210ENST00000497815 LMOD2Q6P5Q4 547 aa16.45■□□□□ 0.22
CUX1-210ENST00000497815 USP6P35125 1406 aa16.45■□□□□ 0.22
CUX1-210ENST00000497815 ANKRD36BQ8N2N9 1353 aa16.44■□□□□ 0.22
CUX1-210ENST00000497815 ZNF316A6NFI3 1004 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms