RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 E9PSI1 815 aa14.65□□□□□ -0.06
CHMP3-209ENST00000494623 PAK3O75914 559 aaPredicted RBP14.65□□□□□ -0.06
CHMP3-209ENST00000494623 NPM2Q86SE8 214 aaKnown RBP14.65□□□□□ -0.06
CHMP3-209ENST00000494623 QRICH2Q9H0J4 1663 aa14.65□□□□□ -0.07
CHMP3-209ENST00000494623 IPO9Q96P70 1041 aaKnown RBP14.65□□□□□ -0.07
CHMP3-209ENST00000494623 SLC52A1Q9NWF4 448 aa14.65□□□□□ -0.07
CHMP3-209ENST00000494623 BCAR3O75815 825 aa14.64□□□□□ -0.07
CHMP3-209ENST00000494623 MTHFSP49914 203 aa14.64□□□□□ -0.07
CHMP3-209ENST00000494623 CGNL1Q0VF96 1302 aa14.64□□□□□ -0.07
CHMP3-209ENST00000494623 RRP7AQ9Y3A4 280 aaKnown RBP14.63□□□□□ -0.07
CHMP3-209ENST00000494623 MS4A1P11836 297 aa14.63□□□□□ -0.07
CHMP3-209ENST00000494623 FBXO31Q5XUX0 539 aaPredicted RBP14.62□□□□□ -0.07
CHMP3-209ENST00000494623 WWC1Q8IX03 1113 aa14.62□□□□□ -0.07
CHMP3-209ENST00000494623 FAM69CQ0P6D2 419 aa14.62□□□□□ -0.07
CHMP3-209ENST00000494623 BACH2Q9BYV9 841 aa14.62□□□□□ -0.07
CHMP3-209ENST00000494623 ARHGAP31Q2M1Z3 1444 aa14.61□□□□□ -0.07
CHMP3-209ENST00000494623 NEXMIFQ5QGS0 1516 aa14.61□□□□□ -0.07
CHMP3-209ENST00000494623 NKTRP30414 1462 aaKnown RBP14.61□□□□□ -0.07
CHMP3-209ENST00000494623 SRPK2P78362 688 aaKnown RBP14.61□□□□□ -0.07
CHMP3-209ENST00000494623 NGEFQ8N5V2 710 aa14.61□□□□□ -0.07
CHMP3-209ENST00000494623 ZBTB47Q9UFB7 747 aaPredicted RBP14.61□□□□□ -0.07
CHMP3-209ENST00000494623 GLI2P10070 1586 aa14.61□□□□□ -0.07
CHMP3-209ENST00000494623 RUNDC1Q96C34 613 aa14.6□□□□□ -0.07
CHMP3-209ENST00000494623 CFAP53Q96M91 514 aa14.6□□□□□ -0.07
CHMP3-209ENST00000494623 PUS7Q96PZ0 661 aaKnown RBP14.6□□□□□ -0.07
CHMP3-209ENST00000494623 PIK3C2BO00750 1634 aa14.6□□□□□ -0.07
CHMP3-209ENST00000494623 ZC3H13Q5T200 1668 aaKnown RBP14.6□□□□□ -0.07
CHMP3-209ENST00000494623 TCP11L2Q8N4U5 519 aa14.59□□□□□ -0.07
CHMP3-209ENST00000494623 STAG3Q9UJ98 1225 aa14.59□□□□□ -0.07
CHMP3-209ENST00000494623 RICTORQ6R327 1708 aa14.59□□□□□ -0.07
CHMP3-209ENST00000494623 CENPQQ7L2Z9 268 aaPredicted RBP14.58□□□□□ -0.07
CHMP3-209ENST00000494623 KDM2BQ8NHM5 1336 aa14.58□□□□□ -0.07
CHMP3-209ENST00000494623 POGKQ9P215 609 aa14.58□□□□□ -0.08
CHMP3-209ENST00000494623 MINK1Q8N4C8 1332 aaPredicted RBP14.58□□□□□ -0.08
CHMP3-209ENST00000494623 ANKRD36BQ8N2N9 1353 aa14.58□□□□□ -0.08
CHMP3-209ENST00000494623 TULP4Q9NRJ4 1543 aa14.57□□□□□ -0.08
CHMP3-209ENST00000494623 PRAM1Q96QH2 718 aa14.57□□□□□ -0.08
CHMP3-209ENST00000494623 U2AF1L5P0DN76 240 aaPredicted RBP14.56□□□□□ -0.08
CHMP3-209ENST00000494623 U2AF1Q01081 240 aaKnown RBP eCLIP14.56□□□□□ -0.08
CHMP3-209ENST00000494623 GGNBP2Q9H3C7 697 aa14.56□□□□□ -0.08
CHMP3-209ENST00000494623 CANXP27824 592 aaKnown RBP14.55□□□□□ -0.08
CHMP3-209ENST00000494623 NBR1Q14596 966 aa14.55□□□□□ -0.08
CHMP3-209ENST00000494623 ARHGEF28Q8N1W1 1705 aaKnown RBP14.55□□□□□ -0.08
CHMP3-209ENST00000494623 ZFYVE9O95405 1425 aa14.55□□□□□ -0.08
CHMP3-209ENST00000494623 FRAT1Q92837 279 aaPredicted RBP14.54□□□□□ -0.08
CHMP3-209ENST00000494623 MLECQ14165 292 aa14.53□□□□□ -0.08
CHMP3-209ENST00000494623 A0A1W2PP64 1363 aa14.53□□□□□ -0.08
CHMP3-209ENST00000494623 SHPRHQ149N8 1683 aa14.52□□□□□ -0.08
CHMP3-209ENST00000494623 PANK1Q8TE04 598 aa14.52□□□□□ -0.08
CHMP3-209ENST00000494623 WDR63Q8IWG1 891 aa14.52□□□□□ -0.09
CHMP3-209ENST00000494623 NSD2O96028 1365 aa14.52□□□□□ -0.09
CHMP3-209ENST00000494623 MYO5BQ9ULV0 1848 aa14.52□□□□□ -0.09
CHMP3-209ENST00000494623 U2SURPO15042 1029 aaKnown RBP14.51□□□□□ -0.09
CHMP3-209ENST00000494623 TERF2IPQ9NYB0 399 aa14.51□□□□□ -0.09
CHMP3-209ENST00000494623 COG6Q9Y2V7 657 aa14.51□□□□□ -0.09
CHMP3-209ENST00000494623 PREX1Q8TCU6 1659 aa14.51□□□□□ -0.09
CHMP3-209ENST00000494623 RGS3P49796 1198 aa14.51□□□□□ -0.09
CHMP3-209ENST00000494623 CDK19Q9BWU1 502 aa14.51□□□□□ -0.09
CHMP3-209ENST00000494623 TMEM131LA2VDJ0 1609 aa14.51□□□□□ -0.09
CHMP3-209ENST00000494623 YTHDC2Q9H6S0 1430 aaKnown RBP14.51□□□□□ -0.09
CHMP3-209ENST00000494623 PDE3AQ14432 1141 aa14.5□□□□□ -0.09
CHMP3-209ENST00000494623 PHF23Q9BUL5 403 aaPredicted RBP14.5□□□□□ -0.09
CHMP3-209ENST00000494623 USP32Q8NFA0 1604 aa14.5□□□□□ -0.09
CHMP3-209ENST00000494623 FYB1O15117 783 aa14.5□□□□□ -0.09
CHMP3-209ENST00000494623 RARSP54136 660 aaKnown RBP14.5□□□□□ -0.09
CHMP3-209ENST00000494623 IGHDP01880 384 aa14.49□□□□□ -0.09
CHMP3-209ENST00000494623 BCL2L13Q9BXK5 485 aa14.49□□□□□ -0.09
CHMP3-209ENST00000494623 CABP1Q9NZU7 370 aa14.49□□□□□ -0.09
CHMP3-209ENST00000494623 PTPRMP28827 1452 aa14.49□□□□□ -0.09
CHMP3-209ENST00000494623 ABCC11Q96J66 1382 aa14.49□□□□□ -0.09
CHMP3-209ENST00000494623 CCDC27Q2M243 656 aa14.49□□□□□ -0.09
CHMP3-209ENST00000494623 ATAD2Q6PL18 1390 aa14.48□□□□□ -0.09
CHMP3-209ENST00000494623 NINLQ9Y2I6 1382 aa14.48□□□□□ -0.09
CHMP3-209ENST00000494623 HDGFL2Q7Z4V5 671 aaPredicted RBP14.48□□□□□ -0.09
CHMP3-209ENST00000494623 WAPLQ7Z5K2 1190 aa14.48□□□□□ -0.09
CHMP3-209ENST00000494623 IQSEC2Q5JU85 1478 aa14.47□□□□□ -0.09
CHMP3-209ENST00000494623 TSPOAP1O95153 1857 aa14.47□□□□□ -0.09
CHMP3-209ENST00000494623 MYH16Q9H6N6 1097 aa14.46□□□□□ -0.09
CHMP3-209ENST00000494623 FAM161AQ3B820 660 aa14.46□□□□□ -0.09
CHMP3-209ENST00000494623 CLUAP1Q96AJ1 413 aa14.46□□□□□ -0.09
CHMP3-209ENST00000494623 TNNQ9UQP3 1299 aa14.46□□□□□ -0.09
CHMP3-209ENST00000494623 ALKQ9UM73 1620 aa14.45□□□□□ -0.1
CHMP3-209ENST00000494623 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.45□□□□□ -0.1
CHMP3-209ENST00000494623 PPP6R1Q9UPN7 881 aa14.44□□□□□ -0.1
CHMP3-209ENST00000494623 TSR2Q969E8 191 aaKnown RBP14.44□□□□□ -0.1
CHMP3-209ENST00000494623 PLEKHF1Q96S99 279 aa14.44□□□□□ -0.1
CHMP3-209ENST00000494623 MAPK8IP3Q9UPT6 1336 aa14.43□□□□□ -0.1
CHMP3-209ENST00000494623 C8orf34Q49A92 452 aa14.43□□□□□ -0.1
CHMP3-209ENST00000494623 PPM1GO15355 546 aaPredicted RBP14.43□□□□□ -0.1
CHMP3-209ENST00000494623 RLBP1P12271 317 aa14.43□□□□□ -0.1
CHMP3-209ENST00000494623 FBLN1P23142 703 aa14.43□□□□□ -0.1
CHMP3-209ENST00000494623 TMPOP42166 694 aaKnown RBP14.43□□□□□ -0.1
CHMP3-209ENST00000494623 CD163L1Q9NR16 1453 aa14.43□□□□□ -0.1
CHMP3-209ENST00000494623 DIAPH1O60610 1272 aaKnown RBP14.43□□□□□ -0.1
CHMP3-209ENST00000494623 RIMBP3CA6NJZ7 1639 aa14.42□□□□□ -0.1
CHMP3-209ENST00000494623 RIMBP3BA6NNM3 1639 aa14.42□□□□□ -0.1
CHMP3-209ENST00000494623 RIMBP3Q9UFD9 1639 aa14.42□□□□□ -0.1
CHMP3-209ENST00000494623 DIP2BQ9P265 1576 aa14.42□□□□□ -0.1
CHMP3-209ENST00000494623 LAS1LQ9Y4W2 734 aaKnown RBP14.42□□□□□ -0.1
CHMP3-209ENST00000494623 NCBP3Q53F19 620 aaKnown RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms