RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 MSS51Q4VC12 460 aa11.52□□□□□ -0.57
SMC4-223ENST00000493695 CCDC24Q8N4L8 307 aa11.52□□□□□ -0.57
SMC4-223ENST00000493695 TTC24A2A3L6 582 aaPredicted RBP11.51□□□□□ -0.57
SMC4-223ENST00000493695 LMOD2Q6P5Q4 547 aa11.51□□□□□ -0.57
SMC4-223ENST00000493695 HLA-CQ95604 372 aa11.51□□□□□ -0.57
SMC4-223ENST00000493695 USB1Q9BQ65 265 aaKnown RBP11.5□□□□□ -0.57
SMC4-223ENST00000493695 NUTM1Q86Y26 1132 aa11.49□□□□□ -0.57
SMC4-223ENST00000493695 ZNF775Q96BV0 537 aaPredicted RBP11.49□□□□□ -0.57
SMC4-223ENST00000493695 GPCPD1Q9NPB8 672 aa11.49□□□□□ -0.57
SMC4-223ENST00000493695 POTECB2RU33 542 aa11.48□□□□□ -0.57
SMC4-223ENST00000493695 CLCN1P35523 988 aa11.48□□□□□ -0.57
SMC4-223ENST00000493695 USP46P62068 366 aa11.48□□□□□ -0.57
SMC4-223ENST00000493695 AAASQ9NRG9 546 aa11.47□□□□□ -0.57
SMC4-223ENST00000493695 GUCA2AQ02747 115 aa11.46□□□□□ -0.57
SMC4-223ENST00000493695 HOXA2O43364 376 aa11.45□□□□□ -0.58
SMC4-223ENST00000493695 TRIM32Q13049 653 aa11.44□□□□□ -0.58
SMC4-223ENST00000493695 AXIN1O15169 862 aa11.43□□□□□ -0.58
SMC4-223ENST00000493695 MMP16P51512 607 aa11.43□□□□□ -0.58
SMC4-223ENST00000493695 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.43□□□□□ -0.58
SMC4-223ENST00000493695 TOR4AQ9NXH8 423 aa11.43□□□□□ -0.58
SMC4-223ENST00000493695 SYMPKQ92797 1274 aaKnown RBP11.42□□□□□ -0.58
SMC4-223ENST00000493695 FAM217BQ9NTX9 383 aaPredicted RBP11.42□□□□□ -0.58
SMC4-223ENST00000493695 TTLL12Q14166 644 aaPredicted RBP11.41□□□□□ -0.58
SMC4-223ENST00000493695 DXOO77932 396 aaKnown RBP11.4□□□□□ -0.58
SMC4-223ENST00000493695 C6orf229H3BNL8 230 aa11.39□□□□□ -0.59
SMC4-223ENST00000493695 WNT7AO00755 349 aa11.39□□□□□ -0.59
SMC4-223ENST00000493695 MRGPRX2Q96LB1 330 aa11.39□□□□□ -0.59
SMC4-223ENST00000493695 SNIP1Q8TAD8 396 aaKnown RBP11.38□□□□□ -0.59
SMC4-223ENST00000493695 DACH1Q9UI36 760 aa11.38□□□□□ -0.59
SMC4-223ENST00000493695 FDX1P10109 184 aa11.36□□□□□ -0.59
SMC4-223ENST00000493695 SSTR3P32745 418 aaPredicted RBP11.36□□□□□ -0.59
SMC4-223ENST00000493695 C11orf95C9JLR9 678 aaPredicted RBP11.35□□□□□ -0.59
SMC4-223ENST00000493695 JUNDP17535 347 aa11.35□□□□□ -0.59
SMC4-223ENST00000493695 CTC1Q2NKJ3 1217 aa11.35□□□□□ -0.59
SMC4-223ENST00000493695 AVPP01185 164 aa11.34□□□□□ -0.59
SMC4-223ENST00000493695 REPIN1Q9BWE0 567 aaKnown RBP11.34□□□□□ -0.59
SMC4-223ENST00000493695 GMPR2Q9P2T1 348 aaKnown RBP11.34□□□□□ -0.59
SMC4-223ENST00000493695 J3QL48 77 aa11.33□□□□□ -0.6
SMC4-223ENST00000493695 RC3H1Q5TC82 1133 aaKnown RBP11.33□□□□□ -0.6
SMC4-223ENST00000493695 RETREG3Q86VR2 466 aa11.33□□□□□ -0.6
SMC4-223ENST00000493695 CRIPAKQ8N1N5 446 aa11.33□□□□□ -0.6
SMC4-223ENST00000493695 NUDT12Q9BQG2 462 aa11.33□□□□□ -0.6
SMC4-223ENST00000493695 SMPD1P17405 629 aa11.32□□□□□ -0.6
SMC4-223ENST00000493695 ALDH1A1P00352 501 aa11.3□□□□□ -0.6
SMC4-223ENST00000493695 NDUFV2P19404 249 aa11.3□□□□□ -0.6
SMC4-223ENST00000493695 SPIRE2Q8WWL2 714 aa11.3□□□□□ -0.6
SMC4-223ENST00000493695 MS4A1P11836 297 aa11.29□□□□□ -0.6
SMC4-223ENST00000493695 WNT7BP56706 349 aa11.29□□□□□ -0.6
SMC4-223ENST00000493695 BARGINQ6ZT62 677 aa11.29□□□□□ -0.6
SMC4-223ENST00000493695 PCDHGC3Q9UN70 934 aa11.29□□□□□ -0.6
SMC4-223ENST00000493695 SKOR1P84550 965 aa11.28□□□□□ -0.6
SMC4-223ENST00000493695 EHBP1Q8NDI1 1231 aa11.28□□□□□ -0.6
SMC4-223ENST00000493695 ZC3H15Q8WU90 426 aaKnown RBP11.28□□□□□ -0.6
SMC4-223ENST00000493695 ZMYND10O75800 440 aa11.27□□□□□ -0.61
SMC4-223ENST00000493695 GIGYF2Q6Y7W6 1299 aaKnown RBP11.27□□□□□ -0.61
SMC4-223ENST00000493695 HPS1Q92902 700 aa11.27□□□□□ -0.61
SMC4-223ENST00000493695 MOXD2PA6NHM9 499 aa11.26□□□□□ -0.61
SMC4-223ENST00000493695 SMCPP49901 116 aaPredicted RBP11.26□□□□□ -0.61
SMC4-223ENST00000493695 PTCRAQ6ISU1 281 aaPredicted RBP11.26□□□□□ -0.61
SMC4-223ENST00000493695 CCNYL3P0C7X3 344 aa11.25□□□□□ -0.61
SMC4-223ENST00000493695 BEGAINQ9BUH8 593 aa11.25□□□□□ -0.61
SMC4-223ENST00000493695 ATP13A2Q9NQ11 1180 aa11.25□□□□□ -0.61
SMC4-223ENST00000493695 PRR7Q8TB68 274 aa11.24□□□□□ -0.61
SMC4-223ENST00000493695 WASF2Q9Y6W5 498 aa11.24□□□□□ -0.61
SMC4-223ENST00000493695 TREML4Q6UXN2 200 aa11.23□□□□□ -0.61
SMC4-223ENST00000493695 MTMR2Q13614 643 aa11.22□□□□□ -0.61
SMC4-223ENST00000493695 AMHR2Q16671 573 aa11.22□□□□□ -0.61
SMC4-223ENST00000493695 LINC01559Q495D7 138 aa11.22□□□□□ -0.61
SMC4-223ENST00000493695 SENP2Q9HC62 589 aa11.2□□□□□ -0.62
SMC4-223ENST00000493695 WFS1O76024 890 aa11.19□□□□□ -0.62
SMC4-223ENST00000493695 CTHP32929 405 aa11.19□□□□□ -0.62
SMC4-223ENST00000493695 PTPRNQ16849 979 aa11.19□□□□□ -0.62
SMC4-223ENST00000493695 UNC93B1Q9H1C4 597 aa11.19□□□□□ -0.62
SMC4-223ENST00000493695 SNRPBP14678 240 aaKnown RBP11.18□□□□□ -0.62
SMC4-223ENST00000493695 SH3BP2P78314 561 aa11.18□□□□□ -0.62
SMC4-223ENST00000493695 BAP1Q92560 729 aa11.18□□□□□ -0.62
SMC4-223ENST00000493695 TBC1D2Q9BYX2 928 aa11.18□□□□□ -0.62
SMC4-223ENST00000493695 SPDYE5A6NIY4 337 aa11.17□□□□□ -0.62
SMC4-223ENST00000493695 DIXDC1Q155Q3 683 aa11.17□□□□□ -0.62
SMC4-223ENST00000493695 CSPP1Q1MSJ5 1256 aa11.17□□□□□ -0.62
SMC4-223ENST00000493695 KCNH2Q12809 1159 aa11.16□□□□□ -0.62
SMC4-223ENST00000493695 PARP9Q8IXQ6 854 aa11.16□□□□□ -0.62
SMC4-223ENST00000493695 TSC1Q92574 1164 aa11.16□□□□□ -0.62
SMC4-223ENST00000493695 EVA1BQ9NVM1 165 aa11.16□□□□□ -0.62
SMC4-223ENST00000493695 TRIM47Q96LD4 638 aa11.15□□□□□ -0.62
SMC4-223ENST00000493695 TRIM66O15016 1216 aa11.14□□□□□ -0.63
SMC4-223ENST00000493695 AK7Q96M32 723 aa11.14□□□□□ -0.63
SMC4-223ENST00000493695 CAPN5O15484 640 aaPredicted RBP11.13□□□□□ -0.63
SMC4-223ENST00000493695 RSBN1LQ6PCB5 846 aaPredicted RBP11.13□□□□□ -0.63
SMC4-223ENST00000493695 KIFC2Q96AC6 838 aa11.13□□□□□ -0.63
SMC4-223ENST00000493695 TLL2Q9Y6L7 1015 aa11.13□□□□□ -0.63
SMC4-223ENST00000493695 SIAH2O43255 324 aa11.12□□□□□ -0.63
SMC4-223ENST00000493695 BMP1P13497 986 aa11.12□□□□□ -0.63
SMC4-223ENST00000493695 PCDHB15Q9Y5E8 787 aa11.12□□□□□ -0.63
SMC4-223ENST00000493695 RIC3Q7Z5B4 369 aa11.11□□□□□ -0.63
SMC4-223ENST00000493695 ZNF511Q8NB15 262 aa11.11□□□□□ -0.63
SMC4-223ENST00000493695 ZBTB3Q9H5J0 574 aa11.11□□□□□ -0.63
SMC4-223ENST00000493695 NUTM2BA6NNL0 878 aaPredicted RBP11.1□□□□□ -0.63
SMC4-223ENST00000493695 NUTM2EB1AL46 878 aaPredicted RBP11.1□□□□□ -0.63
SMC4-223ENST00000493695 NUTM2DQ5VT03 806 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms