RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 ZBTB24O43167 697 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-218ENST00000493430 DGAT1O75907 488 aa8.38□□□□□ -1.07
PTCD3-218ENST00000493430 NUTM1Q86Y26 1132 aa8.38□□□□□ -1.07
PTCD3-218ENST00000493430 ZC3H15Q8WU90 426 aaKnown RBP8.38□□□□□ -1.07
PTCD3-218ENST00000493430 USB1Q9BQ65 265 aaKnown RBP8.38□□□□□ -1.07
PTCD3-218ENST00000493430 HOXA2O43364 376 aa8.37□□□□□ -1.07
PTCD3-218ENST00000493430 FOXC1Q12948 553 aa8.37□□□□□ -1.07
PTCD3-218ENST00000493430 MMP16P51512 607 aa8.36□□□□□ -1.07
PTCD3-218ENST00000493430 HLA-CQ95604 372 aa8.36□□□□□ -1.07
PTCD3-218ENST00000493430 SSTR3P32745 418 aaPredicted RBP8.35□□□□□ -1.07
PTCD3-218ENST00000493430 REPIN1Q9BWE0 567 aaKnown RBP8.35□□□□□ -1.07
PTCD3-218ENST00000493430 PKD2L1Q9P0L9 805 aa8.35□□□□□ -1.07
PTCD3-218ENST00000493430 FAM187AA6NFU0 413 aa8.34□□□□□ -1.07
PTCD3-218ENST00000493430 TTLL12Q14166 644 aaPredicted RBP8.34□□□□□ -1.07
PTCD3-218ENST00000493430 DXOO77932 396 aaKnown RBP8.33□□□□□ -1.08
PTCD3-218ENST00000493430 MYT1Q01538 1121 aa8.33□□□□□ -1.08
PTCD3-218ENST00000493430 GUCA2AQ02747 115 aa8.32□□□□□ -1.08
PTCD3-218ENST00000493430 AMHR2Q16671 573 aa8.32□□□□□ -1.08
PTCD3-218ENST00000493430 ZNF787Q6DD87 383 aa8.32□□□□□ -1.08
PTCD3-218ENST00000493430 TRIM32Q13049 653 aa8.3□□□□□ -1.08
PTCD3-218ENST00000493430 CYP4X1Q8N118 509 aa8.3□□□□□ -1.08
PTCD3-218ENST00000493430 CCDC24Q8N4L8 307 aa8.3□□□□□ -1.08
PTCD3-218ENST00000493430 SYMPKQ92797 1274 aaKnown RBP8.3□□□□□ -1.08
PTCD3-218ENST00000493430 FDX1P10109 184 aa8.29□□□□□ -1.08
PTCD3-218ENST00000493430 GIGYF2Q6Y7W6 1299 aaKnown RBP8.29□□□□□ -1.08
PTCD3-218ENST00000493430 SPIRE2Q8WWL2 714 aa8.29□□□□□ -1.08
PTCD3-218ENST00000493430 TOR4AQ9NXH8 423 aa8.29□□□□□ -1.08
PTCD3-218ENST00000493430 JUNDP17535 347 aa8.28□□□□□ -1.08
PTCD3-218ENST00000493430 RETREG3Q86VR2 466 aa8.28□□□□□ -1.08
PTCD3-218ENST00000493430 C6orf229H3BNL8 230 aa8.27□□□□□ -1.09
PTCD3-218ENST00000493430 WNT7AO00755 349 aa8.27□□□□□ -1.09
PTCD3-218ENST00000493430 AK7Q96M32 723 aa8.27□□□□□ -1.09
PTCD3-218ENST00000493430 PCDHGC3Q9UN70 934 aa8.27□□□□□ -1.09
PTCD3-218ENST00000493430 TTC24A2A3L6 582 aaPredicted RBP8.26□□□□□ -1.09
PTCD3-218ENST00000493430 TRIM66O15016 1216 aa8.26□□□□□ -1.09
PTCD3-218ENST00000493430 BEGAINQ9BUH8 593 aa8.26□□□□□ -1.09
PTCD3-218ENST00000493430 NDUFV2P19404 249 aa8.25□□□□□ -1.09
PTCD3-218ENST00000493430 AAASQ9NRG9 546 aa8.25□□□□□ -1.09
PTCD3-218ENST00000493430 MOXD2PA6NHM9 499 aa8.24□□□□□ -1.09
PTCD3-218ENST00000493430 DIXDC1Q155Q3 683 aa8.24□□□□□ -1.09
PTCD3-218ENST00000493430 SNIP1Q8TAD8 396 aaKnown RBP8.24□□□□□ -1.09
PTCD3-218ENST00000493430 ST8SIA5O15466 376 aa8.23□□□□□ -1.09
PTCD3-218ENST00000493430 AVPP01185 164 aa8.23□□□□□ -1.09
PTCD3-218ENST00000493430 WNT7BP56706 349 aa8.23□□□□□ -1.09
PTCD3-218ENST00000493430 PARP9Q8IXQ6 854 aa8.23□□□□□ -1.09
PTCD3-218ENST00000493430 MRGPRX2Q96LB1 330 aa8.23□□□□□ -1.09
PTCD3-218ENST00000493430 NUDT12Q9BQG2 462 aa8.23□□□□□ -1.09
PTCD3-218ENST00000493430 SPDYE5A6NIY4 337 aa8.22□□□□□ -1.09
PTCD3-218ENST00000493430 MS4A1P11836 297 aa8.22□□□□□ -1.09
PTCD3-218ENST00000493430 CRIPAKQ8N1N5 446 aa8.22□□□□□ -1.09
PTCD3-218ENST00000493430 GJA5P36382 358 aa8.21□□□□□ -1.1
PTCD3-218ENST00000493430 MTMR2Q13614 643 aa8.21□□□□□ -1.1
PTCD3-218ENST00000493430 CTC1Q2NKJ3 1217 aa8.21□□□□□ -1.1
PTCD3-218ENST00000493430 RC3H1Q5TC82 1133 aaKnown RBP8.21□□□□□ -1.1
PTCD3-218ENST00000493430 TBC1D2Q9BYX2 928 aa8.21□□□□□ -1.1
PTCD3-218ENST00000493430 POTECB2RU33 542 aa8.2□□□□□ -1.1
PTCD3-218ENST00000493430 AXIN1O15169 862 aa8.2□□□□□ -1.1
PTCD3-218ENST00000493430 CCNYL3P0C7X3 344 aa8.2□□□□□ -1.1
PTCD3-218ENST00000493430 PTCRAQ6ISU1 281 aaPredicted RBP8.2□□□□□ -1.1
PTCD3-218ENST00000493430 PRR7Q8TB68 274 aa8.2□□□□□ -1.1
PTCD3-218ENST00000493430 SMPD1P17405 629 aa8.19□□□□□ -1.1
PTCD3-218ENST00000493430 SKOR1P84550 965 aa8.19□□□□□ -1.1
PTCD3-218ENST00000493430 PTPRNQ16849 979 aa8.19□□□□□ -1.1
PTCD3-218ENST00000493430 SMCPP49901 116 aaPredicted RBP8.18□□□□□ -1.1
PTCD3-218ENST00000493430 DESI1Q6ICB0 168 aa8.18□□□□□ -1.1
PTCD3-218ENST00000493430 RSBN1LQ6PCB5 846 aaPredicted RBP8.18□□□□□ -1.1
PTCD3-218ENST00000493430 ZNF775Q96BV0 537 aaPredicted RBP8.18□□□□□ -1.1
PTCD3-218ENST00000493430 EVA1BQ9NVM1 165 aa8.18□□□□□ -1.1
PTCD3-218ENST00000493430 J3QL48 77 aa8.17□□□□□ -1.1
PTCD3-218ENST00000493430 PDE4DQ08499 809 aa8.17□□□□□ -1.1
PTCD3-218ENST00000493430 SPTLC1O15269 473 aa8.16□□□□□ -1.1
PTCD3-218ENST00000493430 RIC3Q7Z5B4 369 aa8.16□□□□□ -1.1
PTCD3-218ENST00000493430 SLC24A3Q9HC58 644 aa8.16□□□□□ -1.1
PTCD3-218ENST00000493430 DACH1Q9UI36 760 aa8.16□□□□□ -1.1
PTCD3-218ENST00000493430 PCDHB15Q9Y5E8 787 aa8.16□□□□□ -1.1
PTCD3-218ENST00000493430 KCNH2Q12809 1159 aa8.15□□□□□ -1.1
PTCD3-218ENST00000493430 EHBP1Q8NDI1 1231 aa8.15□□□□□ -1.1
PTCD3-218ENST00000493430 ALDH1A1P00352 501 aa8.14□□□□□ -1.11
PTCD3-218ENST00000493430 UNC93B1Q9H1C4 597 aa8.14□□□□□ -1.11
PTCD3-218ENST00000493430 ZBTB3Q9H5J0 574 aa8.14□□□□□ -1.11
PTCD3-218ENST00000493430 HRCP23327 699 aa8.13□□□□□ -1.11
PTCD3-218ENST00000493430 SH3BP2P78314 561 aa8.13□□□□□ -1.11
PTCD3-218ENST00000493430 PRPF38BQ5VTL8 546 aaKnown RBP8.13□□□□□ -1.11
PTCD3-218ENST00000493430 HPS1Q92902 700 aa8.13□□□□□ -1.11
PTCD3-218ENST00000493430 SIAH2O43255 324 aa8.12□□□□□ -1.11
PTCD3-218ENST00000493430 LYPD8Q6UX82 237 aa8.12□□□□□ -1.11
PTCD3-218ENST00000493430 GMPR2Q9P2T1 348 aaKnown RBP8.12□□□□□ -1.11
PTCD3-218ENST00000493430 C11orf95C9JLR9 678 aaPredicted RBP8.11□□□□□ -1.11
PTCD3-218ENST00000493430 CFAP99D6REC4 459 aa8.11□□□□□ -1.11
PTCD3-218ENST00000493430 CTHP32929 405 aa8.11□□□□□ -1.11
PTCD3-218ENST00000493430 BAP1Q92560 729 aa8.11□□□□□ -1.11
PTCD3-218ENST00000493430 CSPP1Q1MSJ5 1256 aa8.1□□□□□ -1.11
PTCD3-218ENST00000493430 LINC01559Q495D7 138 aa8.1□□□□□ -1.11
PTCD3-218ENST00000493430 MYSM1Q5VVJ2 828 aa8.1□□□□□ -1.11
PTCD3-218ENST00000493430 CABLES1Q8TDN4 633 aa8.1□□□□□ -1.11
PTCD3-218ENST00000493430 NUTM2BA6NNL0 878 aaPredicted RBP8.09□□□□□ -1.11
PTCD3-218ENST00000493430 NUTM2EB1AL46 878 aaPredicted RBP8.09□□□□□ -1.11
PTCD3-218ENST00000493430 TUSC1Q2TAM9 212 aa8.09□□□□□ -1.11
PTCD3-218ENST00000493430 NUTM2DQ5VT03 806 aaPredicted RBP8.09□□□□□ -1.11
PTCD3-218ENST00000493430 NUTM2AQ8IVF1 878 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms