RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 LRPPRCP42704 1394 aaKnown RBP24.33■■□□□ 1.49
LIME1-208ENST00000493265 PIK3R4Q99570 1358 aa24.33■■□□□ 1.49
LIME1-208ENST00000493265 GPRASP1Q5JY77 1395 aa24.31■■□□□ 1.48
LIME1-208ENST00000493265 NCOA3Q9Y6Q9 1424 aa24.3■■□□□ 1.48
LIME1-208ENST00000493265 XRN1Q8IZH2 1706 aaKnown RBP24.28■■□□□ 1.48
LIME1-208ENST00000493265 SAFB2Q14151 953 aaKnown RBP eCLIP24.28■■□□□ 1.48
LIME1-208ENST00000493265 ABCC11Q96J66 1382 aa24.27■■□□□ 1.48
LIME1-208ENST00000493265 LRP6O75581 1613 aa24.26■■□□□ 1.47
LIME1-208ENST00000493265 WAPLQ7Z5K2 1190 aa24.26■■□□□ 1.47
LIME1-208ENST00000493265 POGKQ9P215 609 aa24.26■■□□□ 1.47
LIME1-208ENST00000493265 ROBO2Q9HCK4 1378 aa24.26■■□□□ 1.47
LIME1-208ENST00000493265 AHDC1Q5TGY3 1603 aaPredicted RBP24.25■■□□□ 1.47
LIME1-208ENST00000493265 ATF3P18847 181 aa24.25■■□□□ 1.47
LIME1-208ENST00000493265 PRAM1Q96QH2 718 aa24.25■■□□□ 1.47
LIME1-208ENST00000493265 USP47Q96K76 1375 aa24.25■■□□□ 1.47
LIME1-208ENST00000493265 KNDC1Q76NI1 1749 aa24.24■■□□□ 1.47
LIME1-208ENST00000493265 CADPS2Q86UW7 1296 aa24.24■■□□□ 1.47
LIME1-208ENST00000493265 ARHGEF28Q8N1W1 1705 aaKnown RBP24.24■■□□□ 1.47
LIME1-208ENST00000493265 C19orf44Q9H6X5 657 aa24.23■■□□□ 1.47
LIME1-208ENST00000493265 PLEKHH1Q9ULM0 1364 aa24.23■■□□□ 1.47
LIME1-208ENST00000493265 SHPRHQ149N8 1683 aa24.23■■□□□ 1.47
LIME1-208ENST00000493265 TECPR2O15040 1411 aa24.22■■□□□ 1.47
LIME1-208ENST00000493265 EIF3AQ14152 1382 aaKnown RBP24.22■■□□□ 1.47
LIME1-208ENST00000493265 HIRIP3Q9BW71 556 aaPredicted RBP24.22■■□□□ 1.47
LIME1-208ENST00000493265 DLC1Q96QB1 1528 aa24.21■■□□□ 1.47
LIME1-208ENST00000493265 EIF4G2P78344 907 aaKnown RBP eCLIP24.21■■□□□ 1.47
LIME1-208ENST00000493265 MEX3CQ5U5Q3 659 aaKnown RBP24.21■■□□□ 1.47
LIME1-208ENST00000493265 PTCH1Q13635 1447 aa24.2■■□□□ 1.46
LIME1-208ENST00000493265 HSPA5P11021 654 aaKnown RBP24.2■■□□□ 1.46
LIME1-208ENST00000493265 SPATA31A6Q5VVP1 1343 aa24.19■■□□□ 1.46
LIME1-208ENST00000493265 CENPJQ9HC77 1338 aaPredicted RBP24.19■■□□□ 1.46
LIME1-208ENST00000493265 ST20-MTHFSA0A0A6YYL1 179 aa24.19■■□□□ 1.46
LIME1-208ENST00000493265 MINK1Q8N4C8 1332 aaPredicted RBP24.17■■□□□ 1.46
LIME1-208ENST00000493265 SIRT1Q96EB6 747 aa24.16■■□□□ 1.46
LIME1-208ENST00000493265 QRICH2Q9H0J4 1663 aa24.15■■□□□ 1.46
LIME1-208ENST00000493265 BRINP3Q76B58 766 aa24.15■■□□□ 1.46
LIME1-208ENST00000493265 DCCP43146 1447 aa24.13■■□□□ 1.45
LIME1-208ENST00000493265 NHSL1Q5SYE7 1610 aa24.11■■□□□ 1.45
LIME1-208ENST00000493265 NUTM2BA6NNL0 878 aaPredicted RBP24.11■■□□□ 1.45
LIME1-208ENST00000493265 NUTM2EB1AL46 878 aaPredicted RBP24.11■■□□□ 1.45
LIME1-208ENST00000493265 ZNF772Q68DY9 489 aaPredicted RBP24.11■■□□□ 1.45
LIME1-208ENST00000493265 NUTM2AQ8IVF1 878 aaPredicted RBP24.11■■□□□ 1.45
LIME1-208ENST00000493265 MST1RQ04912 1400 aa24.1■■□□□ 1.45
LIME1-208ENST00000493265 NALCNQ8IZF0 1738 aa24.09■■□□□ 1.45
LIME1-208ENST00000493265 TESK2Q96S53 571 aa24.06■■□□□ 1.44
LIME1-208ENST00000493265 ADGRL3Q9HAR2 1447 aa24.06■■□□□ 1.44
LIME1-208ENST00000493265 NUTM2FA1L443 756 aa24.03■■□□□ 1.44
LIME1-208ENST00000493265 DDX17Q92841 729 aaKnown RBP24.02■■□□□ 1.44
LIME1-208ENST00000493265 POLR3GLQ9BT43 218 aa24.02■■□□□ 1.44
LIME1-208ENST00000493265 EVC2Q86UK5 1308 aa24.02■■□□□ 1.44
LIME1-208ENST00000493265 WASLO00401 505 aaPredicted RBP24.01■■□□□ 1.43
LIME1-208ENST00000493265 RXRBP28702 533 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 SRPK2P78362 688 aaKnown RBP24.01■■□□□ 1.43
LIME1-208ENST00000493265 TMF1P82094 1093 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 CDK19Q9BWU1 502 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 AFF2P51816 1311 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 SBNO2Q9Y2G9 1366 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 TULP4Q9NRJ4 1543 aa24■■□□□ 1.43
LIME1-208ENST00000493265 UPF1Q92900 1129 aaKnown RBP eCLIP24■■□□□ 1.43
LIME1-208ENST00000493265 CABP2Q9NPB3 220 aa24■■□□□ 1.43
LIME1-208ENST00000493265 ADGRB2O60241 1585 aa23.99■■□□□ 1.43
LIME1-208ENST00000493265 CDC42BPGQ6DT37 1551 aa23.97■■□□□ 1.43
LIME1-208ENST00000493265 LRRC59Q96AG4 307 aaKnown RBP23.97■■□□□ 1.43
LIME1-208ENST00000493265 PNPLA6Q8IY17 1366 aa23.96■■□□□ 1.43
LIME1-208ENST00000493265 C11orf95C9JLR9 678 aaPredicted RBP23.96■■□□□ 1.43
LIME1-208ENST00000493265 SLC24A1O60721 1099 aa23.95■■□□□ 1.42
LIME1-208ENST00000493265 C8orf37Q96NL8 207 aa23.95■■□□□ 1.42
LIME1-208ENST00000493265 C1orf167Q5SNV9 1468 aa23.94■■□□□ 1.42
LIME1-208ENST00000493265 CDK12Q9NYV4 1490 aaPredicted RBP23.94■■□□□ 1.42
LIME1-208ENST00000493265 FMN2Q9NZ56 1722 aa23.93■■□□□ 1.42
LIME1-208ENST00000493265 CDCA8Q53HL2 280 aa23.91■■□□□ 1.42
LIME1-208ENST00000493265 NUDT16Q96DE0 195 aaKnown RBP23.91■■□□□ 1.42
LIME1-208ENST00000493265 PRR36Q9H6K5 1346 aa23.9■■□□□ 1.42
LIME1-208ENST00000493265 RGS12O14924 1447 aa23.89■■□□□ 1.41
LIME1-208ENST00000493265 KIF7Q2M1P5 1343 aa23.88■■□□□ 1.41
LIME1-208ENST00000493265 ZNF316A6NFI3 1004 aaPredicted RBP23.88■■□□□ 1.41
LIME1-208ENST00000493265 TMC1Q8TDI8 760 aa23.88■■□□□ 1.41
LIME1-208ENST00000493265 USP32Q8NFA0 1604 aa23.88■■□□□ 1.41
LIME1-208ENST00000493265 ADAMTS2O95450 1211 aa23.87■■□□□ 1.41
LIME1-208ENST00000493265 ORAI2Q96SN7 254 aa23.87■■□□□ 1.41
LIME1-208ENST00000493265 QTRT2Q9H974 415 aaKnown RBP23.87■■□□□ 1.41
LIME1-208ENST00000493265 RGPD8O14715 1765 aaPredicted RBP23.87■■□□□ 1.41
LIME1-208ENST00000493265 ATP7BP35670 1465 aa23.87■■□□□ 1.41
LIME1-208ENST00000493265 WASHC2AQ641Q2 1341 aa23.86■■□□□ 1.41
LIME1-208ENST00000493265 ESCO1Q5FWF5 840 aa23.86■■□□□ 1.41
LIME1-208ENST00000493265 ATAD2Q6PL18 1390 aa23.85■■□□□ 1.41
LIME1-208ENST00000493265 CCDC7Q96M83 1385 aa23.85■■□□□ 1.41
LIME1-208ENST00000493265 ANKARQ7Z5J8 1434 aa23.84■■□□□ 1.41
LIME1-208ENST00000493265 RBM6P78332 1123 aaKnown RBP23.84■■□□□ 1.41
LIME1-208ENST00000493265 PMFBP1Q8TBY8 1022 aa23.84■■□□□ 1.41
LIME1-208ENST00000493265 NGLY1Q96IV0 654 aa23.84■■□□□ 1.41
LIME1-208ENST00000493265 PPIP5K1Q6PFW1 1433 aa23.84■■□□□ 1.41
LIME1-208ENST00000493265 CABP1Q9NZU7 370 aa23.83■■□□□ 1.41
LIME1-208ENST00000493265 CCDC61Q9Y6R9 512 aa23.83■■□□□ 1.41
LIME1-208ENST00000493265 SOS2Q07890 1332 aaPredicted RBP23.82■■□□□ 1.4
LIME1-208ENST00000493265 PUS7Q96PZ0 661 aaKnown RBP23.81■■□□□ 1.4
LIME1-208ENST00000493265 SLC12A5Q9H2X9 1139 aa23.81■■□□□ 1.4
LIME1-208ENST00000493265 ITSN1Q15811 1721 aa23.81■■□□□ 1.4
LIME1-208ENST00000493265 PHF8Q9UPP1 1060 aa23.8■■□□□ 1.4
LIME1-208ENST00000493265 TOPAZ1Q8N9V7 1692 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms