RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 LRPPRCP42704 1394 aaKnown RBP24.33■■□□□ 1.49
LIME1-208ENST00000493265 PIK3R4Q99570 1358 aa24.33■■□□□ 1.49
LIME1-208ENST00000493265 GPRASP1Q5JY77 1395 aa24.31■■□□□ 1.48
LIME1-208ENST00000493265 NCOA3Q9Y6Q9 1424 aa24.3■■□□□ 1.48
LIME1-208ENST00000493265 XRN1Q8IZH2 1706 aaKnown RBP24.28■■□□□ 1.48
LIME1-208ENST00000493265 SAFB2Q14151 953 aaKnown RBP eCLIP24.28■■□□□ 1.48
LIME1-208ENST00000493265 ABCC11Q96J66 1382 aa24.27■■□□□ 1.48
LIME1-208ENST00000493265 LRP6O75581 1613 aa24.26■■□□□ 1.47
LIME1-208ENST00000493265 WAPLQ7Z5K2 1190 aa24.26■■□□□ 1.47
LIME1-208ENST00000493265 POGKQ9P215 609 aa24.26■■□□□ 1.47
LIME1-208ENST00000493265 ROBO2Q9HCK4 1378 aa24.26■■□□□ 1.47
LIME1-208ENST00000493265 AHDC1Q5TGY3 1603 aaPredicted RBP24.25■■□□□ 1.47
LIME1-208ENST00000493265 ATF3P18847 181 aa24.25■■□□□ 1.47
LIME1-208ENST00000493265 PRAM1Q96QH2 718 aa24.25■■□□□ 1.47
LIME1-208ENST00000493265 USP47Q96K76 1375 aa24.25■■□□□ 1.47
LIME1-208ENST00000493265 KNDC1Q76NI1 1749 aa24.24■■□□□ 1.47
LIME1-208ENST00000493265 CADPS2Q86UW7 1296 aa24.24■■□□□ 1.47
LIME1-208ENST00000493265 ARHGEF28Q8N1W1 1705 aaKnown RBP24.24■■□□□ 1.47
LIME1-208ENST00000493265 C19orf44Q9H6X5 657 aa24.23■■□□□ 1.47
LIME1-208ENST00000493265 PLEKHH1Q9ULM0 1364 aa24.23■■□□□ 1.47
LIME1-208ENST00000493265 SHPRHQ149N8 1683 aa24.23■■□□□ 1.47
LIME1-208ENST00000493265 TECPR2O15040 1411 aa24.22■■□□□ 1.47
LIME1-208ENST00000493265 EIF3AQ14152 1382 aaKnown RBP24.22■■□□□ 1.47
LIME1-208ENST00000493265 HIRIP3Q9BW71 556 aaPredicted RBP24.22■■□□□ 1.47
LIME1-208ENST00000493265 DLC1Q96QB1 1528 aa24.21■■□□□ 1.47
LIME1-208ENST00000493265 EIF4G2P78344 907 aaKnown RBP eCLIP24.21■■□□□ 1.47
LIME1-208ENST00000493265 MEX3CQ5U5Q3 659 aaKnown RBP24.21■■□□□ 1.47
LIME1-208ENST00000493265 PTCH1Q13635 1447 aa24.2■■□□□ 1.46
LIME1-208ENST00000493265 HSPA5P11021 654 aaKnown RBP24.2■■□□□ 1.46
LIME1-208ENST00000493265 SPATA31A6Q5VVP1 1343 aa24.19■■□□□ 1.46
LIME1-208ENST00000493265 CENPJQ9HC77 1338 aaPredicted RBP24.19■■□□□ 1.46
LIME1-208ENST00000493265 ST20-MTHFSA0A0A6YYL1 179 aa24.19■■□□□ 1.46
LIME1-208ENST00000493265 MINK1Q8N4C8 1332 aaPredicted RBP24.17■■□□□ 1.46
LIME1-208ENST00000493265 SIRT1Q96EB6 747 aa24.16■■□□□ 1.46
LIME1-208ENST00000493265 QRICH2Q9H0J4 1663 aa24.15■■□□□ 1.46
LIME1-208ENST00000493265 BRINP3Q76B58 766 aa24.15■■□□□ 1.46
LIME1-208ENST00000493265 DCCP43146 1447 aa24.13■■□□□ 1.45
LIME1-208ENST00000493265 NHSL1Q5SYE7 1610 aa24.11■■□□□ 1.45
LIME1-208ENST00000493265 NUTM2BA6NNL0 878 aaPredicted RBP24.11■■□□□ 1.45
LIME1-208ENST00000493265 NUTM2EB1AL46 878 aaPredicted RBP24.11■■□□□ 1.45
LIME1-208ENST00000493265 ZNF772Q68DY9 489 aaPredicted RBP24.11■■□□□ 1.45
LIME1-208ENST00000493265 NUTM2AQ8IVF1 878 aaPredicted RBP24.11■■□□□ 1.45
LIME1-208ENST00000493265 MST1RQ04912 1400 aa24.1■■□□□ 1.45
LIME1-208ENST00000493265 NALCNQ8IZF0 1738 aa24.09■■□□□ 1.45
LIME1-208ENST00000493265 TESK2Q96S53 571 aa24.06■■□□□ 1.44
LIME1-208ENST00000493265 ADGRL3Q9HAR2 1447 aa24.06■■□□□ 1.44
LIME1-208ENST00000493265 NUTM2FA1L443 756 aa24.03■■□□□ 1.44
LIME1-208ENST00000493265 DDX17Q92841 729 aaKnown RBP24.02■■□□□ 1.44
LIME1-208ENST00000493265 POLR3GLQ9BT43 218 aa24.02■■□□□ 1.44
LIME1-208ENST00000493265 EVC2Q86UK5 1308 aa24.02■■□□□ 1.44
LIME1-208ENST00000493265 WASLO00401 505 aaPredicted RBP24.01■■□□□ 1.43
LIME1-208ENST00000493265 RXRBP28702 533 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 SRPK2P78362 688 aaKnown RBP24.01■■□□□ 1.43
LIME1-208ENST00000493265 TMF1P82094 1093 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 CDK19Q9BWU1 502 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 AFF2P51816 1311 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 SBNO2Q9Y2G9 1366 aa24.01■■□□□ 1.43
LIME1-208ENST00000493265 TULP4Q9NRJ4 1543 aa24■■□□□ 1.43
LIME1-208ENST00000493265 UPF1Q92900 1129 aaKnown RBP eCLIP24■■□□□ 1.43
LIME1-208ENST00000493265 CABP2Q9NPB3 220 aa24■■□□□ 1.43
LIME1-208ENST00000493265 ADGRB2O60241 1585 aa23.99■■□□□ 1.43
LIME1-208ENST00000493265 CDC42BPGQ6DT37 1551 aa23.97■■□□□ 1.43
LIME1-208ENST00000493265 LRRC59Q96AG4 307 aaKnown RBP23.97■■□□□ 1.43
LIME1-208ENST00000493265 PNPLA6Q8IY17 1366 aa23.96■■□□□ 1.43
LIME1-208ENST00000493265 C11orf95C9JLR9 678 aaPredicted RBP23.96■■□□□ 1.43
LIME1-208ENST00000493265 SLC24A1O60721 1099 aa23.95■■□□□ 1.42
LIME1-208ENST00000493265 C8orf37Q96NL8 207 aa23.95■■□□□ 1.42
LIME1-208ENST00000493265 C1orf167Q5SNV9 1468 aa23.94■■□□□ 1.42
LIME1-208ENST00000493265 CDK12Q9NYV4 1490 aaPredicted RBP23.94■■□□□ 1.42
LIME1-208ENST00000493265 FMN2Q9NZ56 1722 aa23.93■■□□□ 1.42
LIME1-208ENST00000493265 CDCA8Q53HL2 280 aa23.91■■□□□ 1.42
LIME1-208ENST00000493265 NUDT16Q96DE0 195 aaKnown RBP23.91■■□□□ 1.42
LIME1-208ENST00000493265 PRR36Q9H6K5 1346 aa23.9■■□□□ 1.42
LIME1-208ENST00000493265 RGS12O14924 1447 aa23.89■■□□□ 1.41
LIME1-208ENST00000493265 KIF7Q2M1P5 1343 aa23.88■■□□□ 1.41
LIME1-208ENST00000493265 ZNF316A6NFI3 1004 aaPredicted RBP23.88■■□□□ 1.41
LIME1-208ENST00000493265 TMC1Q8TDI8 760 aa23.88■■□□□ 1.41
LIME1-208ENST00000493265 USP32Q8NFA0 1604 aa23.88■■□□□ 1.41
LIME1-208ENST00000493265 ADAMTS2O95450 1211 aa23.87■■□□□ 1.41
LIME1-208ENST00000493265 ORAI2Q96SN7 254 aa23.87■■□□□ 1.41
LIME1-208ENST00000493265 QTRT2Q9H974 415 aaKnown RBP23.87■■□□□ 1.41
LIME1-208ENST00000493265 RGPD8O14715 1765 aaPredicted RBP23.87■■□□□ 1.41
LIME1-208ENST00000493265 ATP7BP35670 1465 aa23.87■■□□□ 1.41
LIME1-208ENST00000493265 WASHC2AQ641Q2 1341 aa23.86■■□□□ 1.41
LIME1-208ENST00000493265 ESCO1Q5FWF5 840 aa23.86■■□□□ 1.41
LIME1-208ENST00000493265 ATAD2Q6PL18 1390 aa23.85■■□□□ 1.41
LIME1-208ENST00000493265 CCDC7Q96M83 1385 aa23.85■■□□□ 1.41
LIME1-208ENST00000493265 ANKARQ7Z5J8 1434 aa23.84■■□□□ 1.41
LIME1-208ENST00000493265 RBM6P78332 1123 aaKnown RBP23.84■■□□□ 1.41
LIME1-208ENST00000493265 PMFBP1Q8TBY8 1022 aa23.84■■□□□ 1.41
LIME1-208ENST00000493265 NGLY1Q96IV0 654 aa23.84■■□□□ 1.41
LIME1-208ENST00000493265 PPIP5K1Q6PFW1 1433 aa23.84■■□□□ 1.41
LIME1-208ENST00000493265 CABP1Q9NZU7 370 aa23.83■■□□□ 1.41
LIME1-208ENST00000493265 CCDC61Q9Y6R9 512 aa23.83■■□□□ 1.41
LIME1-208ENST00000493265 SOS2Q07890 1332 aaPredicted RBP23.82■■□□□ 1.4
LIME1-208ENST00000493265 PUS7Q96PZ0 661 aaKnown RBP23.81■■□□□ 1.4
LIME1-208ENST00000493265 SLC12A5Q9H2X9 1139 aa23.81■■□□□ 1.4
LIME1-208ENST00000493265 ITSN1Q15811 1721 aa23.81■■□□□ 1.4
LIME1-208ENST00000493265 PHF8Q9UPP1 1060 aa23.8■■□□□ 1.4
LIME1-208ENST00000493265 TOPAZ1Q8N9V7 1692 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms