RNA–Protein interactions for RNA: ENST00000491258.1

PHC3-213, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best)

Gene PHC3, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-213ENST00000491258 LCE2AQ5TA79 106 aaPredicted RBP11.34□□□□□ -0.59
PHC3-213ENST00000491258 CYP4X1Q8N118 509 aa11.33□□□□□ -0.6
PHC3-213ENST00000491258 MINK1Q8N4C8 1332 aaPredicted RBP11.33□□□□□ -0.6
PHC3-213ENST00000491258 CCDC102AQ96A19 550 aa11.31□□□□□ -0.6
PHC3-213ENST00000491258 AAASQ9NRG9 546 aa11.31□□□□□ -0.6
PHC3-213ENST00000491258 HLA-CQ95604 372 aa11.3□□□□□ -0.6
PHC3-213ENST00000491258 TOR4AQ9NXH8 423 aa11.3□□□□□ -0.6
PHC3-213ENST00000491258 USB1Q9BQ65 265 aaKnown RBP11.29□□□□□ -0.6
PHC3-213ENST00000491258 USP46P62068 366 aa11.28□□□□□ -0.6
PHC3-213ENST00000491258 TTC24A2A3L6 582 aaPredicted RBP11.27□□□□□ -0.61
PHC3-213ENST00000491258 MMP16P51512 607 aa11.27□□□□□ -0.61
PHC3-213ENST00000491258 TREML4Q6UXN2 200 aa11.27□□□□□ -0.61
PHC3-213ENST00000491258 HOXA2O43364 376 aa11.26□□□□□ -0.61
PHC3-213ENST00000491258 TRIM32Q13049 653 aa11.26□□□□□ -0.61
PHC3-213ENST00000491258 GPCPD1Q9NPB8 672 aa11.26□□□□□ -0.61
PHC3-213ENST00000491258 CLCN1P35523 988 aa11.25□□□□□ -0.61
PHC3-213ENST00000491258 CCDC24Q8N4L8 307 aa11.25□□□□□ -0.61
PHC3-213ENST00000491258 KRI1Q8N9T8 703 aaKnown RBP11.25□□□□□ -0.61
PHC3-213ENST00000491258 DXOO77932 396 aaKnown RBP11.24□□□□□ -0.61
PHC3-213ENST00000491258 GUCA2AQ02747 115 aa11.24□□□□□ -0.61
PHC3-213ENST00000491258 AXIN1O15169 862 aa11.23□□□□□ -0.61
PHC3-213ENST00000491258 AVPP01185 164 aa11.23□□□□□ -0.61
PHC3-213ENST00000491258 FAM217BQ9NTX9 383 aaPredicted RBP11.23□□□□□ -0.61
PHC3-213ENST00000491258 DACH1Q9UI36 760 aa11.23□□□□□ -0.61
PHC3-213ENST00000491258 WNT7AO00755 349 aa11.22□□□□□ -0.61
PHC3-213ENST00000491258 NUTM1Q86Y26 1132 aa11.22□□□□□ -0.61
PHC3-213ENST00000491258 CRIPAKQ8N1N5 446 aa11.22□□□□□ -0.61
PHC3-213ENST00000491258 SYMPKQ92797 1274 aaKnown RBP11.2□□□□□ -0.62
PHC3-213ENST00000491258 MRGPRX2Q96LB1 330 aa11.2□□□□□ -0.62
PHC3-213ENST00000491258 CTC1Q2NKJ3 1217 aa11.19□□□□□ -0.62
PHC3-213ENST00000491258 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.19□□□□□ -0.62
PHC3-213ENST00000491258 SNIP1Q8TAD8 396 aaKnown RBP11.19□□□□□ -0.62
PHC3-213ENST00000491258 GMPR2Q9P2T1 348 aaKnown RBP11.18□□□□□ -0.62
PHC3-213ENST00000491258 SMPD1P17405 629 aa11.17□□□□□ -0.62
PHC3-213ENST00000491258 JUNDP17535 347 aa11.17□□□□□ -0.62
PHC3-213ENST00000491258 J3QL48 77 aa11.15□□□□□ -0.62
PHC3-213ENST00000491258 SMCPP49901 116 aaPredicted RBP11.15□□□□□ -0.62
PHC3-213ENST00000491258 REPIN1Q9BWE0 567 aaKnown RBP11.15□□□□□ -0.62
PHC3-213ENST00000491258 C11orf95C9JLR9 678 aaPredicted RBP11.14□□□□□ -0.63
PHC3-213ENST00000491258 FDX1P10109 184 aa11.13□□□□□ -0.63
PHC3-213ENST00000491258 SKOR1P84550 965 aa11.13□□□□□ -0.63
PHC3-213ENST00000491258 RC3H1Q5TC82 1133 aaKnown RBP11.13□□□□□ -0.63
PHC3-213ENST00000491258 RETREG3Q86VR2 466 aa11.13□□□□□ -0.63
PHC3-213ENST00000491258 C6orf229H3BNL8 230 aa11.12□□□□□ -0.63
PHC3-213ENST00000491258 SSTR3P32745 418 aaPredicted RBP11.12□□□□□ -0.63
PHC3-213ENST00000491258 WNT7BP56706 349 aa11.12□□□□□ -0.63
PHC3-213ENST00000491258 TTLL12Q14166 644 aaPredicted RBP11.12□□□□□ -0.63
PHC3-213ENST00000491258 NUDT12Q9BQG2 462 aa11.11□□□□□ -0.63
PHC3-213ENST00000491258 PCDHGC3Q9UN70 934 aa11.1□□□□□ -0.63
PHC3-213ENST00000491258 SPIRE2Q8WWL2 714 aa11.09□□□□□ -0.63
PHC3-213ENST00000491258 HPS1Q92902 700 aa11.09□□□□□ -0.63
PHC3-213ENST00000491258 WFS1O76024 890 aa11.08□□□□□ -0.64
PHC3-213ENST00000491258 PTCRAQ6ISU1 281 aaPredicted RBP11.08□□□□□ -0.64
PHC3-213ENST00000491258 BARGINQ6ZT62 677 aa11.08□□□□□ -0.64
PHC3-213ENST00000491258 ATP13A2Q9NQ11 1180 aa11.08□□□□□ -0.64
PHC3-213ENST00000491258 NDUFV2P19404 249 aa11.07□□□□□ -0.64
PHC3-213ENST00000491258 WIPF1O43516 503 aa11.06□□□□□ -0.64
PHC3-213ENST00000491258 ALDH1A1P00352 501 aa11.06□□□□□ -0.64
PHC3-213ENST00000491258 MS4A1P11836 297 aa11.06□□□□□ -0.64
PHC3-213ENST00000491258 NFX1Q12986 1120 aaKnown RBP11.06□□□□□ -0.64
PHC3-213ENST00000491258 STK17AQ9UEE5 414 aa11.06□□□□□ -0.64
PHC3-213ENST00000491258 MOXD2PA6NHM9 499 aa11.05□□□□□ -0.64
PHC3-213ENST00000491258 ZMYND10O75800 440 aa11.05□□□□□ -0.64
PHC3-213ENST00000491258 EHBP1Q8NDI1 1231 aa11.05□□□□□ -0.64
PHC3-213ENST00000491258 CCNYL3P0C7X3 344 aa11.04□□□□□ -0.64
PHC3-213ENST00000491258 GIGYF2Q6Y7W6 1299 aaKnown RBP11.04□□□□□ -0.64
PHC3-213ENST00000491258 ZC3H15Q8WU90 426 aaKnown RBP11.04□□□□□ -0.64
PHC3-213ENST00000491258 AMHR2Q16671 573 aa11.03□□□□□ -0.64
PHC3-213ENST00000491258 SNRPBP14678 240 aaKnown RBP11.02□□□□□ -0.65
PHC3-213ENST00000491258 SENP2Q9HC62 589 aa11.02□□□□□ -0.65
PHC3-213ENST00000491258 PRR7Q8TB68 274 aa11.01□□□□□ -0.65
PHC3-213ENST00000491258 BEGAINQ9BUH8 593 aa11.01□□□□□ -0.65
PHC3-213ENST00000491258 SH3BP2P78314 561 aa11□□□□□ -0.65
PHC3-213ENST00000491258 PTPRNQ16849 979 aa11□□□□□ -0.65
PHC3-213ENST00000491258 TRIM47Q96LD4 638 aa11□□□□□ -0.65
PHC3-213ENST00000491258 MTMR2Q13614 643 aa10.99□□□□□ -0.65
PHC3-213ENST00000491258 LINC01559Q495D7 138 aa10.99□□□□□ -0.65
PHC3-213ENST00000491258 UNC93B1Q9H1C4 597 aa10.99□□□□□ -0.65
PHC3-213ENST00000491258 WASF2Q9Y6W5 498 aa10.99□□□□□ -0.65
PHC3-213ENST00000491258 SIAH2O43255 324 aa10.98□□□□□ -0.65
PHC3-213ENST00000491258 LCE2CQ5TA81 110 aa10.98□□□□□ -0.65
PHC3-213ENST00000491258 INSM1Q01101 510 aaPredicted RBP10.97□□□□□ -0.65
PHC3-213ENST00000491258 KIFC2Q96AC6 838 aa10.97□□□□□ -0.65
PHC3-213ENST00000491258 EVA1BQ9NVM1 165 aa10.97□□□□□ -0.65
PHC3-213ENST00000491258 SPDYE5A6NIY4 337 aa10.96□□□□□ -0.65
PHC3-213ENST00000491258 KCNH2Q12809 1159 aa10.96□□□□□ -0.65
PHC3-213ENST00000491258 BAP1Q92560 729 aa10.96□□□□□ -0.65
PHC3-213ENST00000491258 TBC1D2Q9BYX2 928 aa10.96□□□□□ -0.65
PHC3-213ENST00000491258 PARP9Q8IXQ6 854 aa10.95□□□□□ -0.66
PHC3-213ENST00000491258 RSBN1LQ6PCB5 846 aaPredicted RBP10.94□□□□□ -0.66
PHC3-213ENST00000491258 CAPN5O15484 640 aaPredicted RBP10.93□□□□□ -0.66
PHC3-213ENST00000491258 CTHP32929 405 aa10.93□□□□□ -0.66
PHC3-213ENST00000491258 DIXDC1Q155Q3 683 aa10.93□□□□□ -0.66
PHC3-213ENST00000491258 DESI1Q6ICB0 168 aa10.93□□□□□ -0.66
PHC3-213ENST00000491258 TLL2Q9Y6L7 1015 aa10.93□□□□□ -0.66
PHC3-213ENST00000491258 TERTO14746 1132 aaKnown RBP10.92□□□□□ -0.66
PHC3-213ENST00000491258 TRIM66O15016 1216 aa10.92□□□□□ -0.66
PHC3-213ENST00000491258 BMP1P13497 986 aa10.92□□□□□ -0.66
PHC3-213ENST00000491258 ZNF511Q8NB15 262 aa10.92□□□□□ -0.66
PHC3-213ENST00000491258 PCDHB15Q9Y5E8 787 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms