RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 PRR20CP86479 221 aa8.54□□□□□ -1.04
VPS41-214ENST00000490924 PRR20DP86480 221 aa8.54□□□□□ -1.04
VPS41-214ENST00000490924 PRR20BP86481 221 aa8.54□□□□□ -1.04
VPS41-214ENST00000490924 PRR20AP86496 221 aa8.54□□□□□ -1.04
VPS41-214ENST00000490924 PPEF1O14829 653 aaPredicted RBP8.53□□□□□ -1.04
VPS41-214ENST00000490924 NEUROD1Q13562 356 aa8.53□□□□□ -1.04
VPS41-214ENST00000490924 SPSB2Q99619 263 aa8.53□□□□□ -1.04
VPS41-214ENST00000490924 CUX1P39880 1505 aa8.53□□□□□ -1.04
VPS41-214ENST00000490924 PRDM2Q13029 1718 aa8.52□□□□□ -1.05
VPS41-214ENST00000490924 CD2BP2O95400 341 aaKnown RBP8.52□□□□□ -1.05
VPS41-214ENST00000490924 FAM161AQ3B820 660 aa8.52□□□□□ -1.05
VPS41-214ENST00000490924 LMOD2Q6P5Q4 547 aa8.52□□□□□ -1.05
VPS41-214ENST00000490924 SCUBE3Q8IX30 993 aa8.52□□□□□ -1.05
VPS41-214ENST00000490924 LCE2BO14633 110 aa8.51□□□□□ -1.05
VPS41-214ENST00000490924 ZBTB24O43167 697 aaPredicted RBP8.51□□□□□ -1.05
VPS41-214ENST00000490924 GRIPAP1Q4V328 841 aa8.51□□□□□ -1.05
VPS41-214ENST00000490924 SULF1Q8IWU6 871 aa8.51□□□□□ -1.05
VPS41-214ENST00000490924 PXYLP1Q8TE99 480 aa8.51□□□□□ -1.05
VPS41-214ENST00000490924 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.5□□□□□ -1.05
VPS41-214ENST00000490924 TNFRSF10AO00220 468 aa8.5□□□□□ -1.05
VPS41-214ENST00000490924 DHX57Q6P158 1386 aaKnown RBP8.49□□□□□ -1.05
VPS41-214ENST00000490924 SEMA3EO15041 775 aa8.49□□□□□ -1.05
VPS41-214ENST00000490924 SLC10A3P09131 477 aa8.49□□□□□ -1.05
VPS41-214ENST00000490924 FOXC1Q12948 553 aa8.49□□□□□ -1.05
VPS41-214ENST00000490924 LIAT1Q6ZQX7 453 aa8.49□□□□□ -1.05
VPS41-214ENST00000490924 TIMELESSQ9UNS1 1208 aa8.49□□□□□ -1.05
VPS41-214ENST00000490924 FMNL1O95466 1100 aaPredicted RBP8.48□□□□□ -1.05
VPS41-214ENST00000490924 ZNF775Q96BV0 537 aaPredicted RBP8.48□□□□□ -1.05
VPS41-214ENST00000490924 DAXXQ9UER7 740 aaPredicted RBP8.48□□□□□ -1.05
VPS41-214ENST00000490924 CCNB3Q8WWL7 1395 aa8.48□□□□□ -1.05
VPS41-214ENST00000490924 FHAD1B1AJZ9 1412 aa8.47□□□□□ -1.05
VPS41-214ENST00000490924 ARHGAP35Q9NRY4 1499 aa8.47□□□□□ -1.05
VPS41-214ENST00000490924 DDX11L8A8MPP1 907 aa8.47□□□□□ -1.05
VPS41-214ENST00000490924 TULP1O00294 542 aaPredicted RBP8.47□□□□□ -1.05
VPS41-214ENST00000490924 RPIAP49247 311 aa8.47□□□□□ -1.05
VPS41-214ENST00000490924 PUS10Q3MIT2 529 aaKnown RBP8.47□□□□□ -1.05
VPS41-214ENST00000490924 METTL3Q86U44 580 aaKnown RBP8.47□□□□□ -1.05
VPS41-214ENST00000490924 CYP4X1Q8N118 509 aa8.47□□□□□ -1.05
VPS41-214ENST00000490924 AQRO60306 1485 aaKnown RBP eCLIP8.46□□□□□ -1.05
VPS41-214ENST00000490924 GNPATO15228 680 aa8.46□□□□□ -1.06
VPS41-214ENST00000490924 ATP6V1AP38606 617 aa8.46□□□□□ -1.06
VPS41-214ENST00000490924 TRIM67Q6ZTA4 783 aa8.46□□□□□ -1.06
VPS41-214ENST00000490924 GTF3C3Q9Y5Q9 886 aa8.46□□□□□ -1.06
VPS41-214ENST00000490924 CADPSQ9ULU8 1353 aa8.45□□□□□ -1.06
VPS41-214ENST00000490924 GDF9O60383 454 aa8.44□□□□□ -1.06
VPS41-214ENST00000490924 IGF1RP08069 1367 aa8.44□□□□□ -1.06
VPS41-214ENST00000490924 EFCAB5A4FU69 1503 aa8.44□□□□□ -1.06
VPS41-214ENST00000490924 ERCC6Q03468 1493 aa8.43□□□□□ -1.06
VPS41-214ENST00000490924 TIAM1Q13009 1591 aa8.43□□□□□ -1.06
VPS41-214ENST00000490924 TTC24A2A3L6 582 aaPredicted RBP8.42□□□□□ -1.06
VPS41-214ENST00000490924 Q3C1V9 767 aa8.42□□□□□ -1.06
VPS41-214ENST00000490924 FCF1Q9Y324 198 aaKnown RBP8.42□□□□□ -1.06
VPS41-214ENST00000490924 RBM26Q5T8P6 1007 aaKnown RBP8.41□□□□□ -1.06
VPS41-214ENST00000490924 LRRC9Q6ZRR7 1453 aa8.4□□□□□ -1.06
VPS41-214ENST00000490924 AXIN1O15169 862 aa8.4□□□□□ -1.06
VPS41-214ENST00000490924 FUT2Q10981 343 aa8.4□□□□□ -1.06
VPS41-214ENST00000490924 MORN1Q5T089 497 aa8.4□□□□□ -1.06
VPS41-214ENST00000490924 FYCO1Q9BQS8 1478 aa8.39□□□□□ -1.07
VPS41-214ENST00000490924 CARMIL1Q5VZK9 1371 aa8.39□□□□□ -1.07
VPS41-214ENST00000490924 TESPA1A2RU30 521 aaPredicted RBP8.39□□□□□ -1.07
VPS41-214ENST00000490924 CTC1Q2NKJ3 1217 aa8.39□□□□□ -1.07
VPS41-214ENST00000490924 EMID1Q96A84 441 aaPredicted RBP8.39□□□□□ -1.07
VPS41-214ENST00000490924 CFAP43Q8NDM7 1665 aa8.39□□□□□ -1.07
VPS41-214ENST00000490924 ABCA10Q8WWZ4 1543 aa8.39□□□□□ -1.07
VPS41-214ENST00000490924 GCGRP47871 477 aa8.38□□□□□ -1.07
VPS41-214ENST00000490924 GPIHBP1Q8IV16 184 aa8.38□□□□□ -1.07
VPS41-214ENST00000490924 SALL2Q9Y467 1007 aaPredicted RBP8.38□□□□□ -1.07
VPS41-214ENST00000490924 FGD5Q6ZNL6 1462 aa8.38□□□□□ -1.07
VPS41-214ENST00000490924 SETD5Q9C0A6 1442 aa8.37□□□□□ -1.07
VPS41-214ENST00000490924 CUL7Q14999 1698 aa8.37□□□□□ -1.07
VPS41-214ENST00000490924 AAASQ9NRG9 546 aa8.37□□□□□ -1.07
VPS41-214ENST00000490924 SLC27A5Q9Y2P5 690 aa8.37□□□□□ -1.07
VPS41-214ENST00000490924 CASKIN1Q8WXD9 1431 aa8.37□□□□□ -1.07
VPS41-214ENST00000490924 DNMBPQ6XZF7 1577 aa8.36□□□□□ -1.07
VPS41-214ENST00000490924 THOC2Q8NI27 1593 aaKnown RBP8.36□□□□□ -1.07
VPS41-214ENST00000490924 C11orf95C9JLR9 678 aaPredicted RBP8.36□□□□□ -1.07
VPS41-214ENST00000490924 ST8SIA5O15466 376 aa8.36□□□□□ -1.07
VPS41-214ENST00000490924 FECHP22830 423 aa8.36□□□□□ -1.07
VPS41-214ENST00000490924 PLA2G2CQ5R387 149 aa8.36□□□□□ -1.07
VPS41-214ENST00000490924 KANK4Q5T7N3 995 aaPredicted RBP8.36□□□□□ -1.07
VPS41-214ENST00000490924 PKD2L1Q9P0L9 805 aa8.35□□□□□ -1.07
VPS41-214ENST00000490924 FMN1Q68DA7 1419 aa8.35□□□□□ -1.07
VPS41-214ENST00000490924 MAPKBP1O60336 1514 aa8.34□□□□□ -1.07
VPS41-214ENST00000490924 TTBK1Q5TCY1 1321 aaPredicted RBP8.34□□□□□ -1.07
VPS41-214ENST00000490924 MSS51Q4VC12 460 aa8.34□□□□□ -1.07
VPS41-214ENST00000490924 BRICD5Q6PL45 260 aa8.33□□□□□ -1.08
VPS41-214ENST00000490924 TREML4Q6UXN2 200 aa8.33□□□□□ -1.08
VPS41-214ENST00000490924 CRIPAKQ8N1N5 446 aa8.33□□□□□ -1.08
VPS41-214ENST00000490924 KRI1Q8N9T8 703 aaKnown RBP8.33□□□□□ -1.08
VPS41-214ENST00000490924 REPIN1Q9BWE0 567 aaKnown RBP8.33□□□□□ -1.08
VPS41-214ENST00000490924 RAB3GAP2Q9H2M9 1393 aa8.33□□□□□ -1.08
VPS41-214ENST00000490924 THAP11Q96EK4 314 aa8.32□□□□□ -1.08
VPS41-214ENST00000490924 POTECB2RU33 542 aa8.31□□□□□ -1.08
VPS41-214ENST00000490924 CCDC24Q8N4L8 307 aa8.31□□□□□ -1.08
VPS41-214ENST00000490924 FAM160A2Q8N612 972 aaPredicted RBP8.31□□□□□ -1.08
VPS41-214ENST00000490924 SNIP1Q8TAD8 396 aaKnown RBP8.31□□□□□ -1.08
VPS41-214ENST00000490924 SENP2Q9HC62 589 aa8.31□□□□□ -1.08
VPS41-214ENST00000490924 TOR4AQ9NXH8 423 aa8.31□□□□□ -1.08
VPS41-214ENST00000490924 FANCD2Q9BXW9 1451 aa8.31□□□□□ -1.08
VPS41-214ENST00000490924 AKNAQ7Z591 1439 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms