RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 MTRQ99707 1265 aa10.24□□□□□ -0.77
HMGB1P38-201ENST00000490557 PCDHB15Q9Y5E8 787 aa10.24□□□□□ -0.77
HMGB1P38-201ENST00000490557 FMNL1O95466 1100 aaPredicted RBP10.23□□□□□ -0.77
HMGB1P38-201ENST00000490557 IL21Q9HBE4 155 aa10.23□□□□□ -0.77
HMGB1P38-201ENST00000490557 SPDYE5A6NIY4 337 aa10.22□□□□□ -0.77
HMGB1P38-201ENST00000490557 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.22□□□□□ -0.77
HMGB1P38-201ENST00000490557 PCDHGC3Q9UN70 934 aa10.22□□□□□ -0.77
HMGB1P38-201ENST00000490557 CABLES1Q8TDN4 633 aa10.21□□□□□ -0.77
HMGB1P38-201ENST00000490557 GTF3C3Q9Y5Q9 886 aa10.21□□□□□ -0.77
HMGB1P38-201ENST00000490557 HRCP23327 699 aa10.2□□□□□ -0.78
HMGB1P38-201ENST00000490557 QPCTQ16769 361 aa10.2□□□□□ -0.78
HMGB1P38-201ENST00000490557 TSC1Q92574 1164 aa10.2□□□□□ -0.78
HMGB1P38-201ENST00000490557 LILRB3O75022 631 aa10.19□□□□□ -0.78
HMGB1P38-201ENST00000490557 ZPR1O75312 459 aa10.19□□□□□ -0.78
HMGB1P38-201ENST00000490557 SYMPKQ92797 1274 aaKnown RBP10.19□□□□□ -0.78
HMGB1P38-201ENST00000490557 SALL2Q9Y467 1007 aaPredicted RBP10.19□□□□□ -0.78
HMGB1P38-201ENST00000490557 TJAP1Q5JTD0 557 aa10.18□□□□□ -0.78
HMGB1P38-201ENST00000490557 RNF19BQ6ZMZ0 732 aa10.18□□□□□ -0.78
HMGB1P38-201ENST00000490557 RETREG3Q86VR2 466 aa10.18□□□□□ -0.78
HMGB1P38-201ENST00000490557 SPSB2Q99619 263 aa10.18□□□□□ -0.78
HMGB1P38-201ENST00000490557 USB1Q9BQ65 265 aaKnown RBP10.18□□□□□ -0.78
HMGB1P38-201ENST00000490557 RFC5P40937 340 aa10.17□□□□□ -0.78
HMGB1P38-201ENST00000490557 KCNC4Q03721 635 aa10.17□□□□□ -0.78
HMGB1P38-201ENST00000490557 HELBQ8NG08 1087 aaPredicted RBP10.17□□□□□ -0.78
HMGB1P38-201ENST00000490557 TMEM259Q4ZIN3 620 aa10.16□□□□□ -0.78
HMGB1P38-201ENST00000490557 RTL5Q5HYW3 569 aaPredicted RBP10.16□□□□□ -0.78
HMGB1P38-201ENST00000490557 PPP2R2DQ66LE6 453 aa10.16□□□□□ -0.78
HMGB1P38-201ENST00000490557 BRICD5Q6PL45 260 aa10.16□□□□□ -0.78
HMGB1P38-201ENST00000490557 PRR7Q8TB68 274 aa10.16□□□□□ -0.78
HMGB1P38-201ENST00000490557 ZNF516Q92618 1163 aa10.15□□□□□ -0.78
HMGB1P38-201ENST00000490557 TLL1O43897 1013 aa10.14□□□□□ -0.79
HMGB1P38-201ENST00000490557 AP1G2O75843 785 aa10.14□□□□□ -0.79
HMGB1P38-201ENST00000490557 ADH1BP00325 375 aa10.14□□□□□ -0.79
HMGB1P38-201ENST00000490557 THAP11Q96EK4 314 aa10.14□□□□□ -0.79
HMGB1P38-201ENST00000490557 CFAP99D6REC4 459 aa10.12□□□□□ -0.79
HMGB1P38-201ENST00000490557 ITGBL1O95965 494 aaPredicted RBP10.11□□□□□ -0.79
HMGB1P38-201ENST00000490557 SLC6A16Q9GZN6 736 aa10.11□□□□□ -0.79
HMGB1P38-201ENST00000490557 MSS51Q4VC12 460 aa10.1□□□□□ -0.79
HMGB1P38-201ENST00000490557 FLIIQ13045 1269 aa10.09□□□□□ -0.79
HMGB1P38-201ENST00000490557 FBXO31Q5XUX0 539 aaPredicted RBP10.09□□□□□ -0.79
HMGB1P38-201ENST00000490557 BANK1Q8NDB2 785 aa10.09□□□□□ -0.79
HMGB1P38-201ENST00000490557 JUNDP17535 347 aa10.08□□□□□ -0.8
HMGB1P38-201ENST00000490557 GGCXP38435 758 aa10.08□□□□□ -0.8
HMGB1P38-201ENST00000490557 DESI1Q6ICB0 168 aa10.08□□□□□ -0.8
HMGB1P38-201ENST00000490557 NKX2-3Q8TAU0 364 aa10.08□□□□□ -0.8
HMGB1P38-201ENST00000490557 PLSCR2Q9NRY7 297 aa10.08□□□□□ -0.8
HMGB1P38-201ENST00000490557 APBB1O00213 710 aa10.07□□□□□ -0.8
HMGB1P38-201ENST00000490557 FAM160A2Q8N612 972 aaPredicted RBP10.07□□□□□ -0.8
HMGB1P38-201ENST00000490557 S1PR4O95977 384 aa10.06□□□□□ -0.8
HMGB1P38-201ENST00000490557 USP17L8P0C7I0 530 aa10.06□□□□□ -0.8
HMGB1P38-201ENST00000490557 CTDSPL2Q05D32 466 aa10.06□□□□□ -0.8
HMGB1P38-201ENST00000490557 PRDM9Q9NQV7 894 aa10.06□□□□□ -0.8
HMGB1P38-201ENST00000490557 PLA2G2EQ9NZK7 142 aa10.04□□□□□ -0.8
HMGB1P38-201ENST00000490557 DXOO77932 396 aaKnown RBP10.03□□□□□ -0.8
HMGB1P38-201ENST00000490557 PTPRNQ16849 979 aa10.03□□□□□ -0.8
HMGB1P38-201ENST00000490557 CCDC24Q8N4L8 307 aa10.03□□□□□ -0.8
HMGB1P38-201ENST00000490557 PRM3Q9NNZ6 103 aa10.03□□□□□ -0.8
HMGB1P38-201ENST00000490557 CTHP32929 405 aa10.02□□□□□ -0.81
HMGB1P38-201ENST00000490557 MMP16P51512 607 aa10.02□□□□□ -0.81
HMGB1P38-201ENST00000490557 LYPD8Q6UX82 237 aa10.02□□□□□ -0.81
HMGB1P38-201ENST00000490557 ERICH6Q7L0X2 663 aa10.02□□□□□ -0.81
HMGB1P38-201ENST00000490557 NUDT12Q9BQG2 462 aa10.02□□□□□ -0.81
HMGB1P38-201ENST00000490557 CCNYL3P0C7X3 344 aa10.01□□□□□ -0.81
HMGB1P38-201ENST00000490557 MCM6Q14566 821 aa10.01□□□□□ -0.81
HMGB1P38-201ENST00000490557 C14orf37Q86TY3 774 aa10.01□□□□□ -0.81
HMGB1P38-201ENST00000490557 LRRN4Q8WUT4 740 aa10.01□□□□□ -0.81
HMGB1P38-201ENST00000490557 SNRKQ9NRH2 765 aa10.01□□□□□ -0.81
HMGB1P38-201ENST00000490557 PER1O15534 1290 aaPredicted RBP10□□□□□ -0.81
HMGB1P38-201ENST00000490557 UBTFP17480 764 aaKnown RBP10□□□□□ -0.81
HMGB1P38-201ENST00000490557 PNMA1Q8ND90 353 aa9.99□□□□□ -0.81
HMGB1P38-201ENST00000490557 RAD21O60216 631 aa9.98□□□□□ -0.81
HMGB1P38-201ENST00000490557 PPP1R18Q6NYC8 613 aa9.98□□□□□ -0.81
HMGB1P38-201ENST00000490557 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.98□□□□□ -0.81
HMGB1P38-201ENST00000490557 FCF1Q9Y324 198 aaKnown RBP9.98□□□□□ -0.81
HMGB1P38-201ENST00000490557 IFFO2Q5TF58 517 aa9.97□□□□□ -0.81
HMGB1P38-201ENST00000490557 MTMR14Q8NCE2 650 aa9.97□□□□□ -0.81
HMGB1P38-201ENST00000490557 PPEF1O14829 653 aaPredicted RBP9.96□□□□□ -0.82
HMGB1P38-201ENST00000490557 HMX1Q9NP08 348 aaPredicted RBP9.96□□□□□ -0.82
HMGB1P38-201ENST00000490557 EVA1BQ9NVM1 165 aa9.96□□□□□ -0.82
HMGB1P38-201ENST00000490557 RNF223E7ERA6 249 aa9.95□□□□□ -0.82
HMGB1P38-201ENST00000490557 SOCS7O14512 581 aa9.95□□□□□ -0.82
HMGB1P38-201ENST00000490557 ZBTB24O43167 697 aaPredicted RBP9.95□□□□□ -0.82
HMGB1P38-201ENST00000490557 KCNH2Q12809 1159 aa9.95□□□□□ -0.82
HMGB1P38-201ENST00000490557 NR6A1Q15406 480 aa9.95□□□□□ -0.82
HMGB1P38-201ENST00000490557 NDUFB9Q9Y6M9 179 aa9.95□□□□□ -0.82
HMGB1P38-201ENST00000490557 ANKLE1Q8NAG6 615 aa9.94□□□□□ -0.82
HMGB1P38-201ENST00000490557 MAP10Q9P2G4 905 aa9.94□□□□□ -0.82
HMGB1P38-201ENST00000490557 WWC1Q8IX03 1113 aa9.93□□□□□ -0.82
HMGB1P38-201ENST00000490557 ARMC2Q8NEN0 867 aa9.93□□□□□ -0.82
HMGB1P38-201ENST00000490557 F12P00748 615 aaPredicted RBP9.92□□□□□ -0.82
HMGB1P38-201ENST00000490557 A0A0G2JS52 829 aa9.9□□□□□ -0.82
HMGB1P38-201ENST00000490557 ABL2P42684 1182 aa9.9□□□□□ -0.82
HMGB1P38-201ENST00000490557 EPS8L1Q8TE68 723 aa9.9□□□□□ -0.82
HMGB1P38-201ENST00000490557 GJD4Q96KN9 370 aaPredicted RBP9.9□□□□□ -0.82
HMGB1P38-201ENST00000490557 TRIM34Q9BYJ4 488 aa9.9□□□□□ -0.82
HMGB1P38-201ENST00000490557 UNC93B1Q9H1C4 597 aa9.9□□□□□ -0.82
HMGB1P38-201ENST00000490557 GDPD2Q9HCC8 539 aa9.9□□□□□ -0.82
HMGB1P38-201ENST00000490557 NBPF14Q5TI25 921 aa9.89□□□□□ -0.83
HMGB1P38-201ENST00000490557 FKBPLQ9UIM3 349 aa9.89□□□□□ -0.83
HMGB1P38-201ENST00000490557 TBC1D2BQ9UPU7 963 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms