RNA–Protein interactions for RNA: ENST00000490435.5

ITGA4-211, Transcript of integrin subunit alpha 4, humanhuman

TSL 5

Gene ITGA4, Length 720 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-211ENST00000490435 KDM4AO75164 1064 aa12.05□□□□□ -0.48
ITGA4-211ENST00000490435 CRIPAKQ8N1N5 446 aa12.04□□□□□ -0.48
ITGA4-211ENST00000490435 MINK1Q8N4C8 1332 aaPredicted RBP12.04□□□□□ -0.48
ITGA4-211ENST00000490435 MMP16P51512 607 aa12.03□□□□□ -0.48
ITGA4-211ENST00000490435 USP46P62068 366 aa12.03□□□□□ -0.48
ITGA4-211ENST00000490435 MDM2Q00987 491 aaPredicted RBP12.03□□□□□ -0.48
ITGA4-211ENST00000490435 AVPP01185 164 aa12.02□□□□□ -0.49
ITGA4-211ENST00000490435 VSIG10Q8N0Z9 540 aa12.02□□□□□ -0.49
ITGA4-211ENST00000490435 USB1Q9BQ65 265 aaKnown RBP12.02□□□□□ -0.49
ITGA4-211ENST00000490435 TTC24A2A3L6 582 aaPredicted RBP12□□□□□ -0.49
ITGA4-211ENST00000490435 WNT7AO00755 349 aa11.99□□□□□ -0.49
ITGA4-211ENST00000490435 TRIM32Q13049 653 aa11.99□□□□□ -0.49
ITGA4-211ENST00000490435 CTC1Q2NKJ3 1217 aa11.99□□□□□ -0.49
ITGA4-211ENST00000490435 AXIN1O15169 862 aa11.98□□□□□ -0.49
ITGA4-211ENST00000490435 DXOO77932 396 aaKnown RBP11.98□□□□□ -0.49
ITGA4-211ENST00000490435 CCDC102AQ96A19 550 aa11.97□□□□□ -0.49
ITGA4-211ENST00000490435 HOXA2O43364 376 aa11.96□□□□□ -0.49
ITGA4-211ENST00000490435 CLCN1P35523 988 aa11.95□□□□□ -0.5
ITGA4-211ENST00000490435 SMCPP49901 116 aaPredicted RBP11.95□□□□□ -0.5
ITGA4-211ENST00000490435 SNIP1Q8TAD8 396 aaKnown RBP11.95□□□□□ -0.5
ITGA4-211ENST00000490435 HLA-CQ95604 372 aa11.95□□□□□ -0.5
ITGA4-211ENST00000490435 GPCPD1Q9NPB8 672 aa11.95□□□□□ -0.5
ITGA4-211ENST00000490435 DACH1Q9UI36 760 aa11.94□□□□□ -0.5
ITGA4-211ENST00000490435 CCDC24Q8N4L8 307 aa11.92□□□□□ -0.5
ITGA4-211ENST00000490435 KRI1Q8N9T8 703 aaKnown RBP11.92□□□□□ -0.5
ITGA4-211ENST00000490435 MRGPRX2Q96LB1 330 aa11.92□□□□□ -0.5
ITGA4-211ENST00000490435 FAM217BQ9NTX9 383 aaPredicted RBP11.92□□□□□ -0.5
ITGA4-211ENST00000490435 SMPD1P17405 629 aa11.91□□□□□ -0.5
ITGA4-211ENST00000490435 REPIN1Q9BWE0 567 aaKnown RBP11.91□□□□□ -0.5
ITGA4-211ENST00000490435 TREML4Q6UXN2 200 aa11.9□□□□□ -0.5
ITGA4-211ENST00000490435 NUTM1Q86Y26 1132 aa11.9□□□□□ -0.5
ITGA4-211ENST00000490435 GMPR2Q9P2T1 348 aaKnown RBP11.9□□□□□ -0.5
ITGA4-211ENST00000490435 C11orf95C9JLR9 678 aaPredicted RBP11.89□□□□□ -0.51
ITGA4-211ENST00000490435 GUCA2AQ02747 115 aa11.88□□□□□ -0.51
ITGA4-211ENST00000490435 JUNDP17535 347 aa11.87□□□□□ -0.51
ITGA4-211ENST00000490435 WNT7BP56706 349 aa11.87□□□□□ -0.51
ITGA4-211ENST00000490435 J3QL48 77 aa11.86□□□□□ -0.51
ITGA4-211ENST00000490435 RC3H1Q5TC82 1133 aaKnown RBP11.86□□□□□ -0.51
ITGA4-211ENST00000490435 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.85□□□□□ -0.51
ITGA4-211ENST00000490435 SYMPKQ92797 1274 aaKnown RBP11.85□□□□□ -0.51
ITGA4-211ENST00000490435 RETREG3Q86VR2 466 aa11.84□□□□□ -0.51
ITGA4-211ENST00000490435 SKOR1P84550 965 aa11.83□□□□□ -0.52
ITGA4-211ENST00000490435 LCE2AQ5TA79 106 aaPredicted RBP11.83□□□□□ -0.52
ITGA4-211ENST00000490435 FDX1P10109 184 aa11.82□□□□□ -0.52
ITGA4-211ENST00000490435 ATP13A2Q9NQ11 1180 aa11.82□□□□□ -0.52
ITGA4-211ENST00000490435 NUDT12Q9BQG2 462 aa11.81□□□□□ -0.52
ITGA4-211ENST00000490435 HPS1Q92902 700 aa11.8□□□□□ -0.52
ITGA4-211ENST00000490435 C6orf229H3BNL8 230 aa11.79□□□□□ -0.52
ITGA4-211ENST00000490435 WFS1O76024 890 aa11.79□□□□□ -0.52
ITGA4-211ENST00000490435 SSTR3P32745 418 aaPredicted RBP11.79□□□□□ -0.52
ITGA4-211ENST00000490435 SENP2Q9HC62 589 aa11.79□□□□□ -0.52
ITGA4-211ENST00000490435 PCDHGC3Q9UN70 934 aa11.78□□□□□ -0.52
ITGA4-211ENST00000490435 ALDH1A1P00352 501 aa11.77□□□□□ -0.53
ITGA4-211ENST00000490435 PTCRAQ6ISU1 281 aaPredicted RBP11.77□□□□□ -0.53
ITGA4-211ENST00000490435 MS4A1P11836 297 aa11.76□□□□□ -0.53
ITGA4-211ENST00000490435 SPIRE2Q8WWL2 714 aa11.76□□□□□ -0.53
ITGA4-211ENST00000490435 TTLL12Q14166 644 aaPredicted RBP11.75□□□□□ -0.53
ITGA4-211ENST00000490435 EHBP1Q8NDI1 1231 aa11.75□□□□□ -0.53
ITGA4-211ENST00000490435 TRIM47Q96LD4 638 aa11.75□□□□□ -0.53
ITGA4-211ENST00000490435 CCNYL3P0C7X3 344 aa11.74□□□□□ -0.53
ITGA4-211ENST00000490435 SNRPBP14678 240 aaKnown RBP11.74□□□□□ -0.53
ITGA4-211ENST00000490435 BARGINQ6ZT62 677 aa11.74□□□□□ -0.53
ITGA4-211ENST00000490435 KIFC2Q96AC6 838 aa11.73□□□□□ -0.53
ITGA4-211ENST00000490435 NFX1Q12986 1120 aaKnown RBP11.72□□□□□ -0.53
ITGA4-211ENST00000490435 MOXD2PA6NHM9 499 aa11.71□□□□□ -0.53
ITGA4-211ENST00000490435 SIAH2O43255 324 aa11.71□□□□□ -0.53
ITGA4-211ENST00000490435 ZMYND10O75800 440 aa11.71□□□□□ -0.53
ITGA4-211ENST00000490435 NDUFV2P19404 249 aa11.71□□□□□ -0.53
ITGA4-211ENST00000490435 AMHR2Q16671 573 aa11.71□□□□□ -0.53
ITGA4-211ENST00000490435 PTPRNQ16849 979 aa11.71□□□□□ -0.53
ITGA4-211ENST00000490435 WASF2Q9Y6W5 498 aa11.7□□□□□ -0.54
ITGA4-211ENST00000490435 SPDYE5A6NIY4 337 aa11.69□□□□□ -0.54
ITGA4-211ENST00000490435 SH3BP2P78314 561 aa11.69□□□□□ -0.54
ITGA4-211ENST00000490435 GIGYF2Q6Y7W6 1299 aaKnown RBP11.69□□□□□ -0.54
ITGA4-211ENST00000490435 PRR7Q8TB68 274 aa11.69□□□□□ -0.54
ITGA4-211ENST00000490435 EVA1BQ9NVM1 165 aa11.69□□□□□ -0.54
ITGA4-211ENST00000490435 TERTO14746 1132 aaKnown RBP11.67□□□□□ -0.54
ITGA4-211ENST00000490435 MTMR2Q13614 643 aa11.67□□□□□ -0.54
ITGA4-211ENST00000490435 ZC3H15Q8WU90 426 aaKnown RBP11.67□□□□□ -0.54
ITGA4-211ENST00000490435 UNC93B1Q9H1C4 597 aa11.67□□□□□ -0.54
ITGA4-211ENST00000490435 KCNH2Q12809 1159 aa11.66□□□□□ -0.54
ITGA4-211ENST00000490435 DESI1Q6ICB0 168 aa11.66□□□□□ -0.54
ITGA4-211ENST00000490435 BEGAINQ9BUH8 593 aa11.66□□□□□ -0.54
ITGA4-211ENST00000490435 WIPF1O43516 503 aa11.65□□□□□ -0.54
ITGA4-211ENST00000490435 DIXDC1Q155Q3 683 aa11.65□□□□□ -0.54
ITGA4-211ENST00000490435 CAPN5O15484 640 aaPredicted RBP11.64□□□□□ -0.55
ITGA4-211ENST00000490435 GJA5P36382 358 aa11.64□□□□□ -0.55
ITGA4-211ENST00000490435 BAP1Q92560 729 aa11.64□□□□□ -0.55
ITGA4-211ENST00000490435 LINC01559Q495D7 138 aa11.63□□□□□ -0.55
ITGA4-211ENST00000490435 INSM1Q01101 510 aaPredicted RBP11.62□□□□□ -0.55
ITGA4-211ENST00000490435 ZNF511Q8NB15 262 aa11.61□□□□□ -0.55
ITGA4-211ENST00000490435 TBC1D2Q9BYX2 928 aa11.61□□□□□ -0.55
ITGA4-211ENST00000490435 PLEKHG3A1L390 1219 aa11.6□□□□□ -0.55
ITGA4-211ENST00000490435 BMP1P13497 986 aa11.6□□□□□ -0.55
ITGA4-211ENST00000490435 VARSP26640 1264 aaKnown RBP11.6□□□□□ -0.55
ITGA4-211ENST00000490435 STK17AQ9UEE5 414 aa11.6□□□□□ -0.55
ITGA4-211ENST00000490435 RSBN1LQ6PCB5 846 aaPredicted RBP11.59□□□□□ -0.55
ITGA4-211ENST00000490435 TRIM46Q7Z4K8 759 aa11.59□□□□□ -0.55
ITGA4-211ENST00000490435 PARP9Q8IXQ6 854 aa11.58□□□□□ -0.56
ITGA4-211ENST00000490435 MPNDQ8N594 471 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms