RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ARHGEF28Q8N1W1 1705 aaKnown RBP16.11■□□□□ 0.17
TRIM40-208ENST00000489892 LTKP29376 864 aa16.11■□□□□ 0.17
TRIM40-208ENST00000489892 DDX10Q13206 875 aaKnown RBP16.11■□□□□ 0.17
TRIM40-208ENST00000489892 SIRT1Q96EB6 747 aa16.11■□□□□ 0.17
TRIM40-208ENST00000489892 KNDC1Q76NI1 1749 aa16.11■□□□□ 0.17
TRIM40-208ENST00000489892 TECPR2O15040 1411 aa16.11■□□□□ 0.17
TRIM40-208ENST00000489892 ADAMTS13Q76LX8 1427 aa16.11■□□□□ 0.17
TRIM40-208ENST00000489892 FAM135BQ49AJ0 1406 aa16.1■□□□□ 0.17
TRIM40-208ENST00000489892 QRICH2Q9H0J4 1663 aa16.09■□□□□ 0.17
TRIM40-208ENST00000489892 PUS7Q96PZ0 661 aaKnown RBP16.09■□□□□ 0.17
TRIM40-208ENST00000489892 SENP3Q9H4L4 574 aaPredicted RBP16.09■□□□□ 0.17
TRIM40-208ENST00000489892 POGKQ9P215 609 aa16.09■□□□□ 0.17
TRIM40-208ENST00000489892 EVC2Q86UK5 1308 aa16.08■□□□□ 0.16
TRIM40-208ENST00000489892 UPF1Q92900 1129 aaKnown RBP eCLIP16.07■□□□□ 0.16
TRIM40-208ENST00000489892 STK26Q9P289 416 aa16.07■□□□□ 0.16
TRIM40-208ENST00000489892 METP08581 1390 aa16.06■□□□□ 0.16
TRIM40-208ENST00000489892 C11orf95C9JLR9 678 aaPredicted RBP16.06■□□□□ 0.16
TRIM40-208ENST00000489892 POLR3GLQ9BT43 218 aa16.05■□□□□ 0.16
TRIM40-208ENST00000489892 MIER1Q8N108 512 aa16.04■□□□□ 0.16
TRIM40-208ENST00000489892 PTCH1Q13635 1447 aa16.03■□□□□ 0.16
TRIM40-208ENST00000489892 XIRP1Q702N8 1843 aaKnown RBP16.03■□□□□ 0.16
TRIM40-208ENST00000489892 NINLQ9Y2I6 1382 aa16.03■□□□□ 0.16
TRIM40-208ENST00000489892 ANP32CO43423 234 aa16.03■□□□□ 0.16
TRIM40-208ENST00000489892 PRAM1Q96QH2 718 aa16.03■□□□□ 0.16
TRIM40-208ENST00000489892 SLC26A8Q96RN1 970 aa16.01■□□□□ 0.15
TRIM40-208ENST00000489892 ATAD2Q6PL18 1390 aa16■□□□□ 0.15
TRIM40-208ENST00000489892 XRN1Q8IZH2 1706 aaKnown RBP15.99■□□□□ 0.15
TRIM40-208ENST00000489892 KTN1Q86UP2 1357 aaKnown RBP15.99■□□□□ 0.15
TRIM40-208ENST00000489892 AMOTL2Q9Y2J4 779 aa15.98■□□□□ 0.15
TRIM40-208ENST00000489892 ADGRB2O60241 1585 aa15.96■□□□□ 0.15
TRIM40-208ENST00000489892 TULP4Q9NRJ4 1543 aa15.96■□□□□ 0.15
TRIM40-208ENST00000489892 MINK1Q8N4C8 1332 aaPredicted RBP15.95■□□□□ 0.14
TRIM40-208ENST00000489892 SRPK2P78362 688 aaKnown RBP15.95■□□□□ 0.14
TRIM40-208ENST00000489892 SAFB2Q14151 953 aaKnown RBP eCLIP15.95■□□□□ 0.14
TRIM40-208ENST00000489892 TMEM94Q12767 1356 aa15.95■□□□□ 0.14
TRIM40-208ENST00000489892 ROBO2Q9HCK4 1378 aa15.95■□□□□ 0.14
TRIM40-208ENST00000489892 PTPRUQ92729 1446 aa15.94■□□□□ 0.14
TRIM40-208ENST00000489892 CHD2O14647 1828 aaKnown RBP15.94■□□□□ 0.14
TRIM40-208ENST00000489892 GTF3C3Q9Y5Q9 886 aa15.94■□□□□ 0.14
TRIM40-208ENST00000489892 ROBO1Q9Y6N7 1651 aa15.93■□□□□ 0.14
TRIM40-208ENST00000489892 NKTRP30414 1462 aaKnown RBP15.93■□□□□ 0.14
TRIM40-208ENST00000489892 KCNA6P17658 529 aa15.93■□□□□ 0.14
TRIM40-208ENST00000489892 PROSER2Q86WR7 435 aaPredicted RBP15.93■□□□□ 0.14
TRIM40-208ENST00000489892 NWD1Q149M9 1564 aa15.92■□□□□ 0.14
TRIM40-208ENST00000489892 CCER2I3L3R5 266 aa15.92■□□□□ 0.14
TRIM40-208ENST00000489892 WAPLQ7Z5K2 1190 aa15.92■□□□□ 0.14
TRIM40-208ENST00000489892 KNSTRNQ9Y448 316 aa15.92■□□□□ 0.14
TRIM40-208ENST00000489892 MYOM1P52179 1685 aa15.92■□□□□ 0.14
TRIM40-208ENST00000489892 PLEKHH1Q9ULM0 1364 aa15.91■□□□□ 0.14
TRIM40-208ENST00000489892 WASLO00401 505 aaPredicted RBP15.91■□□□□ 0.14
TRIM40-208ENST00000489892 PANK3Q9H999 370 aa15.91■□□□□ 0.14
TRIM40-208ENST00000489892 NPC1L1Q9UHC9 1359 aa15.9■□□□□ 0.14
TRIM40-208ENST00000489892 CDK19Q9BWU1 502 aa15.9■□□□□ 0.14
TRIM40-208ENST00000489892 TERF2IPQ9NYB0 399 aa15.9■□□□□ 0.14
TRIM40-208ENST00000489892 MSH6P52701 1360 aa15.89■□□□□ 0.13
TRIM40-208ENST00000489892 RALBP1Q15311 655 aa15.89■□□□□ 0.13
TRIM40-208ENST00000489892 TMC1Q8TDI8 760 aa15.89■□□□□ 0.13
TRIM40-208ENST00000489892 ANKRD36BQ8N2N9 1353 aa15.88■□□□□ 0.13
TRIM40-208ENST00000489892 RBM33Q96EV2 1170 aaKnown RBP15.88■□□□□ 0.13
TRIM40-208ENST00000489892 ATP7BP35670 1465 aa15.87■□□□□ 0.13
TRIM40-208ENST00000489892 PRKRIP1Q9H875 184 aaPredicted RBP15.87■□□□□ 0.13
TRIM40-208ENST00000489892 CABP2Q9NPB3 220 aa15.87■□□□□ 0.13
TRIM40-208ENST00000489892 NCOA3Q9Y6Q9 1424 aa15.86■□□□□ 0.13
TRIM40-208ENST00000489892 HDGFL2Q7Z4V5 671 aaPredicted RBP15.86■□□□□ 0.13
TRIM40-208ENST00000489892 ANKARQ7Z5J8 1434 aa15.85■□□□□ 0.13
TRIM40-208ENST00000489892 PHLPP1O60346 1717 aa15.85■□□□□ 0.13
TRIM40-208ENST00000489892 CDC42BPGQ6DT37 1551 aa15.85■□□□□ 0.13
TRIM40-208ENST00000489892 PER1O15534 1290 aaPredicted RBP15.85■□□□□ 0.13
TRIM40-208ENST00000489892 CCDC61Q9Y6R9 512 aa15.85■□□□□ 0.13
TRIM40-208ENST00000489892 NSD2O96028 1365 aa15.85■□□□□ 0.13
TRIM40-208ENST00000489892 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.85■□□□□ 0.13
TRIM40-208ENST00000489892 ADGRL3Q9HAR2 1447 aa15.85■□□□□ 0.13
TRIM40-208ENST00000489892 USP32Q8NFA0 1604 aa15.84■□□□□ 0.13
TRIM40-208ENST00000489892 YTHDC1Q96MU7 727 aaKnown RBP15.84■□□□□ 0.13
TRIM40-208ENST00000489892 CGNL1Q0VF96 1302 aa15.84■□□□□ 0.13
TRIM40-208ENST00000489892 ITSN1Q15811 1721 aa15.82■□□□□ 0.12
TRIM40-208ENST00000489892 C14orf37Q86TY3 774 aa15.82■□□□□ 0.12
TRIM40-208ENST00000489892 NUDT16Q96DE0 195 aaKnown RBP15.82■□□□□ 0.12
TRIM40-208ENST00000489892 SLC12A5Q9H2X9 1139 aa15.82■□□□□ 0.12
TRIM40-208ENST00000489892 SLAIN2Q9P270 581 aa15.82■□□□□ 0.12
TRIM40-208ENST00000489892 PPIP5K1Q6PFW1 1433 aa15.81■□□□□ 0.12
TRIM40-208ENST00000489892 PARD3Q8TEW0 1356 aa15.81■□□□□ 0.12
TRIM40-208ENST00000489892 MYBBP1AQ9BQG0 1328 aaKnown RBP15.81■□□□□ 0.12
TRIM40-208ENST00000489892 NSD3Q9BZ95 1437 aa15.8■□□□□ 0.12
TRIM40-208ENST00000489892 ZNF692Q9BU19 519 aaPredicted RBP15.8■□□□□ 0.12
TRIM40-208ENST00000489892 DCCP43146 1447 aa15.79■□□□□ 0.12
TRIM40-208ENST00000489892 A0A1W2PP64 1363 aa15.79■□□□□ 0.12
TRIM40-208ENST00000489892 AMER1Q5JTC6 1135 aaPredicted RBP15.79■□□□□ 0.12
TRIM40-208ENST00000489892 CABP1Q9NZU7 370 aa15.79■□□□□ 0.12
TRIM40-208ENST00000489892 FMN2Q9NZ56 1722 aa15.79■□□□□ 0.12
TRIM40-208ENST00000489892 JCADQ9P266 1359 aa15.78■□□□□ 0.12
TRIM40-208ENST00000489892 NALCNQ8IZF0 1738 aa15.78■□□□□ 0.12
TRIM40-208ENST00000489892 TOPAZ1Q8N9V7 1692 aa15.78■□□□□ 0.12
TRIM40-208ENST00000489892 PLEKHG3A1L390 1219 aa15.77■□□□□ 0.12
TRIM40-208ENST00000489892 NLRP13Q86W25 1043 aa15.77■□□□□ 0.12
TRIM40-208ENST00000489892 C19orf44Q9H6X5 657 aa15.77■□□□□ 0.12
TRIM40-208ENST00000489892 CPSF1Q10570 1443 aaKnown RBP15.77■□□□□ 0.11
TRIM40-208ENST00000489892 EDC4Q6P2E9 1401 aaKnown RBP15.77■□□□□ 0.11
TRIM40-208ENST00000489892 BRD4O60885 1362 aaPredicted RBP15.76■□□□□ 0.11
TRIM40-208ENST00000489892 COL16A1Q07092 1604 aaPredicted RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms