RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 NRXN3Q9Y4C0 1643 aa23.8■■□□□ 1.4
UFD1-209ENST00000489406 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.79■■□□□ 1.4
UFD1-209ENST00000489406 EN1Q05925 392 aaPredicted RBP23.78■■□□□ 1.4
UFD1-209ENST00000489406 KRT27Q7Z3Y8 459 aa23.78■■□□□ 1.4
UFD1-209ENST00000489406 PTPN23Q9H3S7 1636 aa23.76■■□□□ 1.39
UFD1-209ENST00000489406 SLIT2O94813 1529 aa23.75■■□□□ 1.39
UFD1-209ENST00000489406 XPCQ01831 940 aaPredicted RBP23.74■■□□□ 1.39
UFD1-209ENST00000489406 NPHP3Q7Z494 1330 aa23.72■■□□□ 1.39
UFD1-209ENST00000489406 CCDC9Q9Y3X0 531 aaKnown RBP23.71■■□□□ 1.39
UFD1-209ENST00000489406 ONECUT3O60422 494 aaPredicted RBP23.7■■□□□ 1.38
UFD1-209ENST00000489406 SENP3-EIF4A1A0A087X0R7 540 aa23.69■■□□□ 1.38
UFD1-209ENST00000489406 ESCO1Q5FWF5 840 aa23.69■■□□□ 1.38
UFD1-209ENST00000489406 PXDNQ92626 1479 aa23.68■■□□□ 1.38
UFD1-209ENST00000489406 VPS72Q15906 364 aa23.68■■□□□ 1.38
UFD1-209ENST00000489406 A0A0G2JS52 829 aa23.67■■□□□ 1.38
UFD1-209ENST00000489406 FOXO3O43524 673 aa23.67■■□□□ 1.38
UFD1-209ENST00000489406 MYT1Q01538 1121 aa23.67■■□□□ 1.38
UFD1-209ENST00000489406 ANKRD50Q9ULJ7 1429 aa23.67■■□□□ 1.38
UFD1-209ENST00000489406 E9PCH4 1651 aa23.67■■□□□ 1.38
UFD1-209ENST00000489406 DCAF8L1A6NGE4 600 aa23.66■■□□□ 1.38
UFD1-209ENST00000489406 ZNF326Q5BKZ1 582 aaKnown RBP23.65■■□□□ 1.38
UFD1-209ENST00000489406 ROBO2Q9HCK4 1378 aa23.63■■□□□ 1.37
UFD1-209ENST00000489406 EZH2Q15910 746 aaKnown RBP23.62■■□□□ 1.37
UFD1-209ENST00000489406 FAM182BQ5T319 152 aa23.61■■□□□ 1.37
UFD1-209ENST00000489406 ADGRL2O95490 1459 aa23.6■■□□□ 1.37
UFD1-209ENST00000489406 IQGAP3Q86VI3 1631 aa23.59■■□□□ 1.37
UFD1-209ENST00000489406 RGPD1P0DJD0 1748 aa23.59■■□□□ 1.37
UFD1-209ENST00000489406 USP32Q8NFA0 1604 aa23.58■■□□□ 1.36
UFD1-209ENST00000489406 VPS8Q8N3P4 1428 aa23.58■■□□□ 1.36
UFD1-209ENST00000489406 HAP1P54257 671 aaPredicted RBP23.57■■□□□ 1.36
UFD1-209ENST00000489406 PPP1R1BQ9UD71 204 aaPredicted RBP23.57■■□□□ 1.36
UFD1-209ENST00000489406 FAM98CQ17RN3 349 aaKnown RBP23.56■■□□□ 1.36
UFD1-209ENST00000489406 ZNF784Q8NCA9 323 aaPredicted RBP23.56■■□□□ 1.36
UFD1-209ENST00000489406 LRPPRCP42704 1394 aaKnown RBP23.55■■□□□ 1.36
UFD1-209ENST00000489406 PLEKHG5O94827 1062 aa23.55■■□□□ 1.36
UFD1-209ENST00000489406 SPATA31A3Q5VYP0 1347 aa23.55■■□□□ 1.36
UFD1-209ENST00000489406 DISP2A7MBM2 1401 aa23.54■■□□□ 1.36
UFD1-209ENST00000489406 CABLES1Q8TDN4 633 aa23.53■■□□□ 1.36
UFD1-209ENST00000489406 NUTM2FA1L443 756 aa23.52■■□□□ 1.36
UFD1-209ENST00000489406 CAMKK2Q96RR4 588 aa23.52■■□□□ 1.36
UFD1-209ENST00000489406 PLCH1Q4KWH8 1693 aa23.51■■□□□ 1.35
UFD1-209ENST00000489406 C1QTNF8P60827 252 aa23.5■■□□□ 1.35
UFD1-209ENST00000489406 NWD2Q9ULI1 1742 aa23.49■■□□□ 1.35
UFD1-209ENST00000489406 TNS1Q9HBL0 1735 aaKnown RBP23.48■■□□□ 1.35
UFD1-209ENST00000489406 NINLQ9Y2I6 1382 aa23.48■■□□□ 1.35
UFD1-209ENST00000489406 HFM1A2PYH4 1435 aa23.48■■□□□ 1.35
UFD1-209ENST00000489406 SPON1Q9HCB6 807 aa23.47■■□□□ 1.35
UFD1-209ENST00000489406 CAMTA1Q9Y6Y1 1673 aa23.47■■□□□ 1.35
UFD1-209ENST00000489406 NEXMIFQ5QGS0 1516 aa23.46■■□□□ 1.35
UFD1-209ENST00000489406 CDC42BPGQ6DT37 1551 aa23.45■■□□□ 1.34
UFD1-209ENST00000489406 KRT28Q7Z3Y7 464 aa23.45■■□□□ 1.34
UFD1-209ENST00000489406 FAM83GA6ND36 823 aa23.44■■□□□ 1.34
UFD1-209ENST00000489406 TRIM37O94972 964 aa23.44■■□□□ 1.34
UFD1-209ENST00000489406 KCNQ2O43526 872 aa23.43■■□□□ 1.34
UFD1-209ENST00000489406 APBA3O96018 575 aa23.43■■□□□ 1.34
UFD1-209ENST00000489406 NUP155O75694 1391 aa23.42■■□□□ 1.34
UFD1-209ENST00000489406 FAM50AQ14320 339 aaKnown RBP23.42■■□□□ 1.34
UFD1-209ENST00000489406 PRAG1Q86YV5 1406 aa23.42■■□□□ 1.34
UFD1-209ENST00000489406 NBPF8Q3BBV2 869 aa23.41■■□□□ 1.34
UFD1-209ENST00000489406 NBPF14Q5TI25 921 aa23.41■■□□□ 1.34
UFD1-209ENST00000489406 CCDC144AA2RUR9 1427 aa23.41■■□□□ 1.34
UFD1-209ENST00000489406 ADGRB2O60241 1585 aa23.4■■□□□ 1.34
UFD1-209ENST00000489406 NAIPQ13075 1403 aa23.39■■□□□ 1.33
UFD1-209ENST00000489406 PARD3Q8TEW0 1356 aa23.39■■□□□ 1.33
UFD1-209ENST00000489406 LMOD2Q6P5Q4 547 aa23.38■■□□□ 1.33
UFD1-209ENST00000489406 BTG4Q9NY30 223 aa23.38■■□□□ 1.33
UFD1-209ENST00000489406 TNS3Q68CZ2 1445 aa23.37■■□□□ 1.33
UFD1-209ENST00000489406 NRAPQ86VF7 1730 aa23.35■■□□□ 1.33
UFD1-209ENST00000489406 VGFO15240 615 aaPredicted RBP23.34■■□□□ 1.33
UFD1-209ENST00000489406 FAM196AQ6ZSG2 479 aa23.34■■□□□ 1.33
UFD1-209ENST00000489406 PSME1Q06323 249 aa23.33■■□□□ 1.33
UFD1-209ENST00000489406 SPATA31A5Q5VU36 1347 aa23.33■■□□□ 1.32
UFD1-209ENST00000489406 SPATA31A7Q8IWB4 1347 aa23.33■■□□□ 1.32
UFD1-209ENST00000489406 RREB1Q92766 1687 aa23.32■■□□□ 1.32
UFD1-209ENST00000489406 APLP2Q06481 763 aa23.32■■□□□ 1.32
UFD1-209ENST00000489406 WAPLQ7Z5K2 1190 aa23.32■■□□□ 1.32
UFD1-209ENST00000489406 NUP188Q5SRE5 1749 aa23.32■■□□□ 1.32
UFD1-209ENST00000489406 ABCA3Q99758 1704 aa23.32■■□□□ 1.32
UFD1-209ENST00000489406 KIF1AQ12756 1690 aa23.31■■□□□ 1.32
UFD1-209ENST00000489406 THSD7AQ9UPZ6 1657 aa23.3■■□□□ 1.32
UFD1-209ENST00000489406 CLTCL1P53675 1640 aa23.3■■□□□ 1.32
UFD1-209ENST00000489406 UTRNP46939 3433 aa23.29■■□□□ 1.32
UFD1-209ENST00000489406 STK26Q9P289 416 aa23.27■■□□□ 1.32
UFD1-209ENST00000489406 PHF8Q9UPP1 1060 aa23.26■■□□□ 1.31
UFD1-209ENST00000489406 ARHGEF10O15013 1369 aa23.26■■□□□ 1.31
UFD1-209ENST00000489406 CEP350Q5VT06 3117 aa23.25■■□□□ 1.31
UFD1-209ENST00000489406 SBNO1A3KN83 1393 aa23.25■■□□□ 1.31
UFD1-209ENST00000489406 FMN2Q9NZ56 1722 aa23.24■■□□□ 1.31
UFD1-209ENST00000489406 KIF1BO60333 1816 aa23.22■■□□□ 1.31
UFD1-209ENST00000489406 PLEKHH1Q9ULM0 1364 aa23.22■■□□□ 1.31
UFD1-209ENST00000489406 NRKQ7Z2Y5 1582 aa23.22■■□□□ 1.31
UFD1-209ENST00000489406 COL14A1Q05707 1796 aaKnown RBP23.22■■□□□ 1.31
UFD1-209ENST00000489406 GIGYF1O75420 1035 aaPredicted RBP23.2■■□□□ 1.3
UFD1-209ENST00000489406 CHD4Q14839 1912 aa23.18■■□□□ 1.3
UFD1-209ENST00000489406 SPATA31A1Q5TZJ5 1347 aa23.18■■□□□ 1.3
UFD1-209ENST00000489406 ROCK1Q13464 1354 aa23.17■■□□□ 1.3
UFD1-209ENST00000489406 RGPD8O14715 1765 aaPredicted RBP23.17■■□□□ 1.3
UFD1-209ENST00000489406 RRBP1Q9P2E9 1410 aaKnown RBP23.16■■□□□ 1.3
UFD1-209ENST00000489406 PDE3BQ13370 1112 aa23.16■■□□□ 1.3
UFD1-209ENST00000489406 PDGFDQ9GZP0 370 aaPredicted RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms