RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 ZC3H15Q8WU90 426 aaKnown RBP8.34□□□□□ -1.07
ATG4A-208ENST00000489247 RABGEF1Q9UJ41 708 aa8.34□□□□□ -1.07
ATG4A-208ENST00000489247 PHLDB1Q86UU1 1377 aa8.34□□□□□ -1.07
ATG4A-208ENST00000489247 GNPATO15228 680 aa8.33□□□□□ -1.08
ATG4A-208ENST00000489247 HIC1Q14526 733 aa8.33□□□□□ -1.08
ATG4A-208ENST00000489247 SEPT9Q9UHD8 586 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-208ENST00000489247 EHBP1L1Q8N3D4 1523 aa8.33□□□□□ -1.08
ATG4A-208ENST00000489247 HECW1Q76N89 1606 aa8.32□□□□□ -1.08
ATG4A-208ENST00000489247 TTBK1Q5TCY1 1321 aaPredicted RBP8.32□□□□□ -1.08
ATG4A-208ENST00000489247 KCNC4Q03721 635 aa8.32□□□□□ -1.08
ATG4A-208ENST00000489247 CHMP7Q8WUX9 453 aaPredicted RBP8.32□□□□□ -1.08
ATG4A-208ENST00000489247 RBM27Q9P2N5 1060 aaKnown RBP8.32□□□□□ -1.08
ATG4A-208ENST00000489247 CLSPNQ9HAW4 1339 aa8.31□□□□□ -1.08
ATG4A-208ENST00000489247 EPRSP07814 1512 aaKnown RBP8.31□□□□□ -1.08
ATG4A-208ENST00000489247 LOC100996750A0A140TA64 210 aa8.31□□□□□ -1.08
ATG4A-208ENST00000489247 ONECUT3O60422 494 aaPredicted RBP8.31□□□□□ -1.08
ATG4A-208ENST00000489247 PACS2Q86VP3 889 aa8.31□□□□□ -1.08
ATG4A-208ENST00000489247 KRTAP4-6Q9BYQ5 205 aa8.31□□□□□ -1.08
ATG4A-208ENST00000489247 PNMA3Q9UL41 463 aa8.31□□□□□ -1.08
ATG4A-208ENST00000489247 NUDT18Q6ZVK8 323 aa8.3□□□□□ -1.08
ATG4A-208ENST00000489247 TATDN2Q93075 761 aa8.3□□□□□ -1.08
ATG4A-208ENST00000489247 NBPF3Q9H094 633 aa8.3□□□□□ -1.08
ATG4A-208ENST00000489247 CARMIL2Q6F5E8 1435 aa8.29□□□□□ -1.08
ATG4A-208ENST00000489247 ADGRG1Q9Y653 693 aa8.29□□□□□ -1.08
ATG4A-208ENST00000489247 MTUS2Q5JR59 1369 aa8.29□□□□□ -1.08
ATG4A-208ENST00000489247 FGD6Q6ZV73 1430 aa8.29□□□□□ -1.08
ATG4A-208ENST00000489247 NUP153P49790 1475 aaKnown RBP8.28□□□□□ -1.08
ATG4A-208ENST00000489247 NCOA2Q15596 1464 aa8.28□□□□□ -1.08
ATG4A-208ENST00000489247 ZMYND10O75800 440 aa8.28□□□□□ -1.08
ATG4A-208ENST00000489247 CCER1Q8TC90 406 aaPredicted RBP8.28□□□□□ -1.08
ATG4A-208ENST00000489247 MAGI3Q5TCQ9 1506 aa8.28□□□□□ -1.08
ATG4A-208ENST00000489247 MYOM3Q5VTT5 1437 aa8.28□□□□□ -1.08
ATG4A-208ENST00000489247 TCOF1Q13428 1488 aaKnown RBP8.27□□□□□ -1.09
ATG4A-208ENST00000489247 LRRIQ1Q96JM4 1722 aa8.27□□□□□ -1.09
ATG4A-208ENST00000489247 NBPF26B4DH59 902 aa8.27□□□□□ -1.09
ATG4A-208ENST00000489247 EYA1Q99502 592 aa8.27□□□□□ -1.09
ATG4A-208ENST00000489247 BARGINQ6ZT62 677 aa8.26□□□□□ -1.09
ATG4A-208ENST00000489247 ANKK1Q8NFD2 765 aa8.26□□□□□ -1.09
ATG4A-208ENST00000489247 MIA2Q96PC5 1412 aa8.26□□□□□ -1.09
ATG4A-208ENST00000489247 ABCA8O94911 1581 aa8.26□□□□□ -1.09
ATG4A-208ENST00000489247 SHROOM2Q13796 1616 aa8.25□□□□□ -1.09
ATG4A-208ENST00000489247 RAPGEF6Q8TEU7 1601 aa8.25□□□□□ -1.09
ATG4A-208ENST00000489247 MAP2K5Q13163 448 aa8.25□□□□□ -1.09
ATG4A-208ENST00000489247 FAM98CQ17RN3 349 aaKnown RBP8.25□□□□□ -1.09
ATG4A-208ENST00000489247 NYAP1Q6ZVC0 841 aa8.25□□□□□ -1.09
ATG4A-208ENST00000489247 PHOX2BQ99453 314 aa8.25□□□□□ -1.09
ATG4A-208ENST00000489247 SUPT6HQ7KZ85 1726 aaKnown RBP8.25□□□□□ -1.09
ATG4A-208ENST00000489247 DHX57Q6P158 1386 aaKnown RBP8.24□□□□□ -1.09
ATG4A-208ENST00000489247 AKNAQ7Z591 1439 aa8.24□□□□□ -1.09
ATG4A-208ENST00000489247 IRF6O14896 467 aa8.24□□□□□ -1.09
ATG4A-208ENST00000489247 NLRP7Q8WX94 980 aa8.24□□□□□ -1.09
ATG4A-208ENST00000489247 ZFRQ96KR1 1074 aaKnown RBP8.24□□□□□ -1.09
ATG4A-208ENST00000489247 PRKD2Q9BZL6 878 aa8.24□□□□□ -1.09
ATG4A-208ENST00000489247 SLC24A3Q9HC58 644 aa8.24□□□□□ -1.09
ATG4A-208ENST00000489247 BCAMP50895 628 aa8.23□□□□□ -1.09
ATG4A-208ENST00000489247 METTL3Q86U44 580 aaKnown RBP8.23□□□□□ -1.09
ATG4A-208ENST00000489247 LAPTM4BQ86VI4 370 aa8.23□□□□□ -1.09
ATG4A-208ENST00000489247 PXYLP1Q8TE99 480 aa8.23□□□□□ -1.09
ATG4A-208ENST00000489247 CCDC102AQ96A19 550 aa8.23□□□□□ -1.09
ATG4A-208ENST00000489247 CDK13Q14004 1512 aaKnown RBP8.23□□□□□ -1.09
ATG4A-208ENST00000489247 CLASP1Q7Z460 1538 aa8.23□□□□□ -1.09
ATG4A-208ENST00000489247 TROQ12816 1431 aaPredicted RBP8.22□□□□□ -1.09
ATG4A-208ENST00000489247 SETD5Q9C0A6 1442 aa8.22□□□□□ -1.09
ATG4A-208ENST00000489247 RCCD1A6NED2 376 aa8.22□□□□□ -1.09
ATG4A-208ENST00000489247 KRI1Q8N9T8 703 aaKnown RBP8.22□□□□□ -1.09
ATG4A-208ENST00000489247 RBM46Q8TBY0 533 aaKnown RBP8.22□□□□□ -1.09
ATG4A-208ENST00000489247 ATP1B4Q9UN42 357 aaPredicted RBP8.22□□□□□ -1.09
ATG4A-208ENST00000489247 MINK1Q8N4C8 1332 aaPredicted RBP8.22□□□□□ -1.09
ATG4A-208ENST00000489247 PRG4Q92954 1404 aaPredicted RBP8.21□□□□□ -1.09
ATG4A-208ENST00000489247 PLB1Q6P1J6 1458 aa8.21□□□□□ -1.09
ATG4A-208ENST00000489247 SAMD7Q7Z3H4 446 aa8.21□□□□□ -1.1
ATG4A-208ENST00000489247 CDK11AQ9UQ88 783 aaPredicted RBP8.21□□□□□ -1.1
ATG4A-208ENST00000489247 HFM1A2PYH4 1435 aa8.2□□□□□ -1.1
ATG4A-208ENST00000489247 OATP04181 439 aa8.2□□□□□ -1.1
ATG4A-208ENST00000489247 ADCY10Q96PN6 1610 aa8.2□□□□□ -1.1
ATG4A-208ENST00000489247 RAB3GAP2Q9H2M9 1393 aa8.2□□□□□ -1.1
ATG4A-208ENST00000489247 SWT1Q5T5J6 900 aaKnown RBP8.19□□□□□ -1.1
ATG4A-208ENST00000489247 PTPRGP23470 1445 aa8.19□□□□□ -1.1
ATG4A-208ENST00000489247 PTPRKQ15262 1439 aa8.19□□□□□ -1.1
ATG4A-208ENST00000489247 ATP10BO94823 1461 aa8.19□□□□□ -1.1
ATG4A-208ENST00000489247 PTPN23Q9H3S7 1636 aa8.18□□□□□ -1.1
ATG4A-208ENST00000489247 CHD1O14646 1710 aa8.18□□□□□ -1.1
ATG4A-208ENST00000489247 SOWAHBA6NEL2 793 aa8.18□□□□□ -1.1
ATG4A-208ENST00000489247 PDZRN3Q9UPQ7 1066 aa8.18□□□□□ -1.1
ATG4A-208ENST00000489247 DNAJB2P25686 324 aa8.17□□□□□ -1.1
ATG4A-208ENST00000489247 BRPF1P55201 1214 aaPredicted RBP8.17□□□□□ -1.1
ATG4A-208ENST00000489247 FAM50AQ14320 339 aaKnown RBP8.17□□□□□ -1.1
ATG4A-208ENST00000489247 TMEM134Q9H6X4 195 aa8.17□□□□□ -1.1
ATG4A-208ENST00000489247 WBP1LQ9NX94 342 aa8.17□□□□□ -1.1
ATG4A-208ENST00000489247 V9GY48 417 aaPredicted RBP8.17□□□□□ -1.1
ATG4A-208ENST00000489247 ACIN1Q9UKV3 1341 aaKnown RBP8.17□□□□□ -1.1
ATG4A-208ENST00000489247 ROCK1Q13464 1354 aa8.17□□□□□ -1.1
ATG4A-208ENST00000489247 UHRF1BP1LA0JNW5 1464 aa8.17□□□□□ -1.1
ATG4A-208ENST00000489247 ABCC10Q5T3U5 1492 aa8.17□□□□□ -1.1
ATG4A-208ENST00000489247 NAIPQ13075 1403 aa8.16□□□□□ -1.1
ATG4A-208ENST00000489247 LCE2AQ5TA79 106 aaPredicted RBP8.16□□□□□ -1.1
ATG4A-208ENST00000489247 TREML4Q6UXN2 200 aa8.16□□□□□ -1.1
ATG4A-208ENST00000489247 LRCH3Q96II8 777 aa8.16□□□□□ -1.1
ATG4A-208ENST00000489247 UACAQ9BZF9 1416 aa8.16□□□□□ -1.1
ATG4A-208ENST00000489247 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms