RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 KIF21BO75037 1637 aa21.32■■□□□ 1
NPHP4-209ENST00000489180 KDM4AO75164 1064 aa21.32■■□□□ 1
NPHP4-209ENST00000489180 IPO7O95373 1038 aaKnown RBP21.32■■□□□ 1
NPHP4-209ENST00000489180 AKNAQ7Z591 1439 aa21.31■■□□□ 1
NPHP4-209ENST00000489180 CCDC73Q6ZRK6 1079 aa21.31■■□□□ 1
NPHP4-209ENST00000489180 ERC2O15083 957 aa21.31■■□□□ 1
NPHP4-209ENST00000489180 MTHFSP49914 203 aa21.31■■□□□ 1
NPHP4-209ENST00000489180 TCP11L2Q8N4U5 519 aa21.31■■□□□ 1
NPHP4-209ENST00000489180 DHX16O60231 1041 aaKnown RBP21.3■■□□□ 1
NPHP4-209ENST00000489180 ANKRD20A12PQ8NF67 263 aa21.3■■□□□ 1
NPHP4-209ENST00000489180 NEUROD6Q96NK8 337 aa21.3■■□□□ 1
NPHP4-209ENST00000489180 NUTM2GQ5VZR2 741 aa21.29■■□□□ 1
NPHP4-209ENST00000489180 SYTL4Q96C24 671 aaPredicted RBP21.29■■□□□ 1
NPHP4-209ENST00000489180 HOOK1Q9UJC3 728 aaKnown RBP21.29■■□□□ 1
NPHP4-209ENST00000489180 TEX35Q5T0J7 233 aa21.28■■□□□ 1
NPHP4-209ENST00000489180 CCDC39Q9UFE4 941 aa21.28■■□□□ 1
NPHP4-209ENST00000489180 PPP2R1AP30153 589 aa21.28■■□□□ 1
NPHP4-209ENST00000489180 PSME1Q06323 249 aa21.28■■□□□ 1
NPHP4-209ENST00000489180 IL27Q8NEV9 243 aa21.28■■□□□ 1
NPHP4-209ENST00000489180 IGF1RP08069 1367 aa21.28■■□□□ 1
NPHP4-209ENST00000489180 LRRC9Q6ZRR7 1453 aa21.28■■□□□ 1
NPHP4-209ENST00000489180 UBTFL1P0CB47 393 aaPredicted RBP21.28■■□□□ 1
NPHP4-209ENST00000489180 BCAR3O75815 825 aa21.27■■□□□ 1
NPHP4-209ENST00000489180 VPS37DQ86XT2 251 aa21.27■■□□□ 1
NPHP4-209ENST00000489180 HSP90AB4PQ58FF6 505 aa21.27■■□□□ 1
NPHP4-209ENST00000489180 AMOTL1Q8IY63 956 aa21.27■■□□□ 1
NPHP4-209ENST00000489180 PRPF40AO75400 957 aaKnown RBP21.27■□□□□ 0.99
NPHP4-209ENST00000489180 EXOSC9Q06265 439 aaKnown RBP21.27■□□□□ 0.99
NPHP4-209ENST00000489180 MNS1Q8NEH6 495 aa21.27■□□□□ 0.99
NPHP4-209ENST00000489180 NOL10Q9BSC4 688 aaKnown RBP21.27■□□□□ 0.99
NPHP4-209ENST00000489180 RIC3Q7Z5B4 369 aa21.26■□□□□ 0.99
NPHP4-209ENST00000489180 CUX1P39880 1505 aa21.26■□□□□ 0.99
NPHP4-209ENST00000489180 CCDC47Q96A33 483 aaKnown RBP21.26■□□□□ 0.99
NPHP4-209ENST00000489180 WASHC4Q2M389 1173 aa21.26■□□□□ 0.99
NPHP4-209ENST00000489180 MIA2Q96PC5 1412 aa21.25■□□□□ 0.99
NPHP4-209ENST00000489180 ERICH2A1L162 156 aa21.25■□□□□ 0.99
NPHP4-209ENST00000489180 AAMPQ13685 434 aa21.25■□□□□ 0.99
NPHP4-209ENST00000489180 NEK4P51957 841 aa21.24■□□□□ 0.99
NPHP4-209ENST00000489180 ANKRD50Q9ULJ7 1429 aa21.24■□□□□ 0.99
NPHP4-209ENST00000489180 PDILTQ8N807 584 aa21.24■□□□□ 0.99
NPHP4-209ENST00000489180 RAD54L2Q9Y4B4 1467 aa21.23■□□□□ 0.99
NPHP4-209ENST00000489180 TSR2Q969E8 191 aaKnown RBP21.23■□□□□ 0.99
NPHP4-209ENST00000489180 FGD5Q6ZNL6 1462 aa21.23■□□□□ 0.99
NPHP4-209ENST00000489180 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.23■□□□□ 0.99
NPHP4-209ENST00000489180 RALYLQ86SE5 291 aaKnown RBP21.22■□□□□ 0.99
NPHP4-209ENST00000489180 NOB1Q9ULX3 412 aaKnown RBP21.22■□□□□ 0.99
NPHP4-209ENST00000489180 FYB1O15117 783 aa21.22■□□□□ 0.99
NPHP4-209ENST00000489180 NAP1L1P55209 391 aaKnown RBP21.22■□□□□ 0.99
NPHP4-209ENST00000489180 FSD1Q9BTV5 496 aa21.22■□□□□ 0.99
NPHP4-209ENST00000489180 PRDM2Q13029 1718 aa21.22■□□□□ 0.99
NPHP4-209ENST00000489180 MSH5O43196 834 aa21.21■□□□□ 0.99
NPHP4-209ENST00000489180 CNTROBQ8N137 903 aa21.21■□□□□ 0.99
NPHP4-209ENST00000489180 NCOA2Q15596 1464 aa21.21■□□□□ 0.99
NPHP4-209ENST00000489180 SAFBQ15424 915 aaKnown RBP eCLIP21.21■□□□□ 0.99
NPHP4-209ENST00000489180 TRIM34Q9BYJ4 488 aa21.21■□□□□ 0.99
NPHP4-209ENST00000489180 NINLQ9Y2I6 1382 aa21.21■□□□□ 0.99
NPHP4-209ENST00000489180 SDF4Q9BRK5 362 aa21.21■□□□□ 0.99
NPHP4-209ENST00000489180 TCEAL9Q9UHQ7 104 aa21.21■□□□□ 0.99
NPHP4-209ENST00000489180 SURF6O75683 361 aaKnown RBP21.2■□□□□ 0.98
NPHP4-209ENST00000489180 CFAP70Q5T0N1 1121 aa21.2■□□□□ 0.98
NPHP4-209ENST00000489180 NBPF1Q3BBV0 1214 aa21.2■□□□□ 0.98
NPHP4-209ENST00000489180 TRIM5Q9C035 493 aa21.2■□□□□ 0.98
NPHP4-209ENST00000489180 ARGLU1Q9NWB6 273 aaPredicted RBP21.2■□□□□ 0.98
NPHP4-209ENST00000489180 TSPY26PQ9H489 355 aa21.19■□□□□ 0.98
NPHP4-209ENST00000489180 PRKAR2BP31323 418 aa21.19■□□□□ 0.98
NPHP4-209ENST00000489180 TTLL5Q6EMB2 1281 aa21.18■□□□□ 0.98
NPHP4-209ENST00000489180 GAPVD1Q14C86 1478 aa21.18■□□□□ 0.98
NPHP4-209ENST00000489180 RBM10P98175 930 aaKnown RBP21.18■□□□□ 0.98
NPHP4-209ENST00000489180 OLFM4Q6UX06 510 aa21.18■□□□□ 0.98
NPHP4-209ENST00000489180 DNAJC2Q99543 621 aaKnown RBP21.18■□□□□ 0.98
NPHP4-209ENST00000489180 PSMA5P28066 241 aa21.17■□□□□ 0.98
NPHP4-209ENST00000489180 FIBPO43427 364 aa21.17■□□□□ 0.98
NPHP4-209ENST00000489180 BACH2Q9BYV9 841 aa21.17■□□□□ 0.98
NPHP4-209ENST00000489180 NAT10Q9H0A0 1025 aaKnown RBP21.17■□□□□ 0.98
NPHP4-209ENST00000489180 CCDC184Q52MB2 194 aa21.17■□□□□ 0.98
NPHP4-209ENST00000489180 MPNDQ8N594 471 aa21.17■□□□□ 0.98
NPHP4-209ENST00000489180 MTMR7Q9Y216 660 aa21.17■□□□□ 0.98
NPHP4-209ENST00000489180 CEBPZQ03701 1054 aaKnown RBP21.16■□□□□ 0.98
NPHP4-209ENST00000489180 TWISTNBQ3B726 338 aaPredicted RBP21.16■□□□□ 0.98
NPHP4-209ENST00000489180 SPC24Q8NBT2 197 aa21.16■□□□□ 0.98
NPHP4-209ENST00000489180 RUFY1Q96T51 708 aa21.16■□□□□ 0.98
NPHP4-209ENST00000489180 FMNL2Q96PY5 1086 aa21.15■□□□□ 0.98
NPHP4-209ENST00000489180 RAPGEF4Q8WZA2 1011 aa21.15■□□□□ 0.98
NPHP4-209ENST00000489180 ZNF428Q96B54 188 aa21.15■□□□□ 0.98
NPHP4-209ENST00000489180 SMC2O95347 1197 aa21.15■□□□□ 0.98
NPHP4-209ENST00000489180 NBPF8Q3BBV2 869 aa21.15■□□□□ 0.98
NPHP4-209ENST00000489180 CLASRPQ8N2M8 674 aaKnown RBP21.14■□□□□ 0.98
NPHP4-209ENST00000489180 RABEP1Q15276 862 aa21.14■□□□□ 0.97
NPHP4-209ENST00000489180 SAMD1Q6SPF0 538 aaPredicted RBP21.14■□□□□ 0.97
NPHP4-209ENST00000489180 CYB5RLQ6IPT4 315 aa21.14■□□□□ 0.97
NPHP4-209ENST00000489180 MBD3O95983 291 aa21.13■□□□□ 0.97
NPHP4-209ENST00000489180 ATP2B1P20020 1258 aa21.13■□□□□ 0.97
NPHP4-209ENST00000489180 NLRP2Q9NX02 1062 aa21.13■□□□□ 0.97
NPHP4-209ENST00000489180 FYCO1Q9BQS8 1478 aa21.12■□□□□ 0.97
NPHP4-209ENST00000489180 GNAI3P08754 354 aa21.12■□□□□ 0.97
NPHP4-209ENST00000489180 PDE3AQ14432 1141 aa21.12■□□□□ 0.97
NPHP4-209ENST00000489180 CCDC30Q5VVM6 783 aa21.12■□□□□ 0.97
NPHP4-209ENST00000489180 CTDP1Q9Y5B0 961 aaPredicted RBP21.12■□□□□ 0.97
NPHP4-209ENST00000489180 NLRP6P59044 892 aa21.12■□□□□ 0.97
NPHP4-209ENST00000489180 CCDC173Q0VFZ6 552 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms