RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 PIK3R4Q99570 1358 aa14.63□□□□□ -0.07
SKA1-204ENST00000488454 STK26Q9P289 416 aa14.63□□□□□ -0.07
SKA1-204ENST00000488454 AMOTL2Q9Y2J4 779 aa14.63□□□□□ -0.07
SKA1-204ENST00000488454 IFT172Q9UG01 1749 aa14.63□□□□□ -0.07
SKA1-204ENST00000488454 METP08581 1390 aa14.62□□□□□ -0.07
SKA1-204ENST00000488454 ZEB1P37275 1124 aaPredicted RBP14.62□□□□□ -0.07
SKA1-204ENST00000488454 FARP1Q9Y4F1 1045 aaPredicted RBP14.62□□□□□ -0.07
SKA1-204ENST00000488454 ALKQ9UM73 1620 aa14.62□□□□□ -0.07
SKA1-204ENST00000488454 NBPF1Q3BBV0 1214 aa14.61□□□□□ -0.07
SKA1-204ENST00000488454 ZNF335Q9H4Z2 1342 aaPredicted RBP14.61□□□□□ -0.07
SKA1-204ENST00000488454 DIP2AQ14689 1571 aa14.6□□□□□ -0.07
SKA1-204ENST00000488454 ROCK2O75116 1388 aaKnown RBP14.6□□□□□ -0.07
SKA1-204ENST00000488454 PROSER2Q86WR7 435 aaPredicted RBP14.59□□□□□ -0.07
SKA1-204ENST00000488454 CARD11Q9BXL7 1154 aa14.58□□□□□ -0.08
SKA1-204ENST00000488454 TRAK1Q9UPV9 953 aa14.58□□□□□ -0.08
SKA1-204ENST00000488454 NRXN3Q9Y4C0 1643 aa14.57□□□□□ -0.08
SKA1-204ENST00000488454 MIER1Q8N108 512 aa14.57□□□□□ -0.08
SKA1-204ENST00000488454 LRPPRCP42704 1394 aaKnown RBP14.57□□□□□ -0.08
SKA1-204ENST00000488454 POGKQ9P215 609 aa14.56□□□□□ -0.08
SKA1-204ENST00000488454 ABCC11Q96J66 1382 aa14.56□□□□□ -0.08
SKA1-204ENST00000488454 YTHDC2Q9H6S0 1430 aaKnown RBP14.56□□□□□ -0.08
SKA1-204ENST00000488454 C14orf37Q86TY3 774 aa14.55□□□□□ -0.08
SKA1-204ENST00000488454 SIRT1Q96EB6 747 aa14.55□□□□□ -0.08
SKA1-204ENST00000488454 PTPRUQ92729 1446 aa14.55□□□□□ -0.08
SKA1-204ENST00000488454 LAMC1P11047 1609 aa14.55□□□□□ -0.08
SKA1-204ENST00000488454 HAX1O00165 279 aa14.54□□□□□ -0.08
SKA1-204ENST00000488454 MNX1P50219 401 aaPredicted RBP14.54□□□□□ -0.08
SKA1-204ENST00000488454 PLCD3Q8N3E9 789 aa14.53□□□□□ -0.08
SKA1-204ENST00000488454 PRAM1Q96QH2 718 aa14.53□□□□□ -0.08
SKA1-204ENST00000488454 RALGAPBQ86X10 1494 aa14.52□□□□□ -0.08
SKA1-204ENST00000488454 WAPLQ7Z5K2 1190 aa14.52□□□□□ -0.09
SKA1-204ENST00000488454 RBM33Q96EV2 1170 aaKnown RBP14.52□□□□□ -0.09
SKA1-204ENST00000488454 KIAA1210Q9ULL0 1709 aa14.52□□□□□ -0.09
SKA1-204ENST00000488454 CPS1P31327 1500 aa14.51□□□□□ -0.09
SKA1-204ENST00000488454 GPRASP1Q5JY77 1395 aa14.51□□□□□ -0.09
SKA1-204ENST00000488454 ADGRB1O14514 1584 aa14.51□□□□□ -0.09
SKA1-204ENST00000488454 EIF3AQ14152 1382 aaKnown RBP14.5□□□□□ -0.09
SKA1-204ENST00000488454 ROBO2Q9HCK4 1378 aa14.5□□□□□ -0.09
SKA1-204ENST00000488454 SAFB2Q14151 953 aaKnown RBP eCLIP14.5□□□□□ -0.09
SKA1-204ENST00000488454 NKTRP30414 1462 aaKnown RBP14.5□□□□□ -0.09
SKA1-204ENST00000488454 TMEM94Q12767 1356 aa14.49□□□□□ -0.09
SKA1-204ENST00000488454 TRPM1Q7Z4N2 1603 aa14.49□□□□□ -0.09
SKA1-204ENST00000488454 PLEKHG5O94827 1062 aa14.49□□□□□ -0.09
SKA1-204ENST00000488454 VASPP50552 380 aaPredicted RBP14.49□□□□□ -0.09
SKA1-204ENST00000488454 CHD2O14647 1828 aaKnown RBP14.49□□□□□ -0.09
SKA1-204ENST00000488454 ASXL1Q8IXJ9 1541 aa14.49□□□□□ -0.09
SKA1-204ENST00000488454 TECPR2O15040 1411 aa14.49□□□□□ -0.09
SKA1-204ENST00000488454 PTCH1Q13635 1447 aa14.49□□□□□ -0.09
SKA1-204ENST00000488454 FAM135BQ49AJ0 1406 aa14.49□□□□□ -0.09
SKA1-204ENST00000488454 C19orf67A6NJJ6 358 aa14.48□□□□□ -0.09
SKA1-204ENST00000488454 CERKQ8TCT0 537 aa14.48□□□□□ -0.09
SKA1-204ENST00000488454 C19orf44Q9H6X5 657 aa14.48□□□□□ -0.09
SKA1-204ENST00000488454 SETD1AO15047 1707 aaKnown RBP14.48□□□□□ -0.09
SKA1-204ENST00000488454 NCOA3Q9Y6Q9 1424 aa14.48□□□□□ -0.09
SKA1-204ENST00000488454 NWD1Q149M9 1564 aa14.47□□□□□ -0.09
SKA1-204ENST00000488454 CENPJQ9HC77 1338 aaPredicted RBP14.47□□□□□ -0.09
SKA1-204ENST00000488454 EIF4G2P78344 907 aaKnown RBP eCLIP14.47□□□□□ -0.09
SKA1-204ENST00000488454 LRRC7Q96NW7 1537 aa14.46□□□□□ -0.09
SKA1-204ENST00000488454 SLC24A1O60721 1099 aa14.46□□□□□ -0.09
SKA1-204ENST00000488454 ATF3P18847 181 aa14.46□□□□□ -0.09
SKA1-204ENST00000488454 MSH6P52701 1360 aa14.46□□□□□ -0.1
SKA1-204ENST00000488454 DLC1Q96QB1 1528 aa14.46□□□□□ -0.1
SKA1-204ENST00000488454 LTBP4Q8N2S1 1624 aa14.45□□□□□ -0.1
SKA1-204ENST00000488454 ST20-MTHFSA0A0A6YYL1 179 aa14.45□□□□□ -0.1
SKA1-204ENST00000488454 USP47Q96K76 1375 aa14.45□□□□□ -0.1
SKA1-204ENST00000488454 PLEKHH1Q9ULM0 1364 aa14.45□□□□□ -0.1
SKA1-204ENST00000488454 MINK1Q8N4C8 1332 aaPredicted RBP14.44□□□□□ -0.1
SKA1-204ENST00000488454 XRN1Q8IZH2 1706 aaKnown RBP14.44□□□□□ -0.1
SKA1-204ENST00000488454 CADPS2Q86UW7 1296 aa14.44□□□□□ -0.1
SKA1-204ENST00000488454 EVX2Q03828 476 aa14.43□□□□□ -0.1
SKA1-204ENST00000488454 HIRIP3Q9BW71 556 aaPredicted RBP14.43□□□□□ -0.1
SKA1-204ENST00000488454 STRCP1A6NGW2 1772 aa14.42□□□□□ -0.1
SKA1-204ENST00000488454 TOM1O60784 492 aa14.42□□□□□ -0.1
SKA1-204ENST00000488454 HSPA5P11021 654 aaKnown RBP14.41□□□□□ -0.1
SKA1-204ENST00000488454 KNDC1Q76NI1 1749 aa14.41□□□□□ -0.1
SKA1-204ENST00000488454 WASLO00401 505 aaPredicted RBP14.4□□□□□ -0.1
SKA1-204ENST00000488454 ADGRL3Q9HAR2 1447 aa14.4□□□□□ -0.1
SKA1-204ENST00000488454 EVC2Q86UK5 1308 aa14.4□□□□□ -0.1
SKA1-204ENST00000488454 UBAP1LF5GYI3 381 aa14.39□□□□□ -0.11
SKA1-204ENST00000488454 CD44P16070 742 aaKnown RBP14.39□□□□□ -0.11
SKA1-204ENST00000488454 SRPK2P78362 688 aaKnown RBP14.39□□□□□ -0.11
SKA1-204ENST00000488454 CDK19Q9BWU1 502 aa14.39□□□□□ -0.11
SKA1-204ENST00000488454 TMF1P82094 1093 aa14.38□□□□□ -0.11
SKA1-204ENST00000488454 SLAIN2Q9P270 581 aa14.38□□□□□ -0.11
SKA1-204ENST00000488454 IQSEC2Q5JU85 1478 aa14.38□□□□□ -0.11
SKA1-204ENST00000488454 NUTM2FA1L443 756 aa14.37□□□□□ -0.11
SKA1-204ENST00000488454 CDCA8Q53HL2 280 aa14.37□□□□□ -0.11
SKA1-204ENST00000488454 ZBTB47Q9UFB7 747 aaPredicted RBP14.37□□□□□ -0.11
SKA1-204ENST00000488454 DCCP43146 1447 aa14.36□□□□□ -0.11
SKA1-204ENST00000488454 TESK2Q96S53 571 aa14.36□□□□□ -0.11
SKA1-204ENST00000488454 SBNO2Q9Y2G9 1366 aa14.35□□□□□ -0.11
SKA1-204ENST00000488454 ARHGEF28Q8N1W1 1705 aaKnown RBP14.35□□□□□ -0.11
SKA1-204ENST00000488454 CABP2Q9NPB3 220 aa14.35□□□□□ -0.11
SKA1-204ENST00000488454 PIP4K2BP78356 416 aa14.34□□□□□ -0.11
SKA1-204ENST00000488454 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.33□□□□□ -0.12
SKA1-204ENST00000488454 ESCO1Q5FWF5 840 aa14.33□□□□□ -0.12
SKA1-204ENST00000488454 NUDT16Q96DE0 195 aaKnown RBP14.33□□□□□ -0.12
SKA1-204ENST00000488454 CCDC61Q9Y6R9 512 aa14.33□□□□□ -0.12
SKA1-204ENST00000488454 SP7Q8TDD2 431 aaPredicted RBP14.32□□□□□ -0.12
SKA1-204ENST00000488454 PUS7Q96PZ0 661 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms