RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 SYCE3A1L190 88 aa18.59■□□□□ 0.57
HLA-DQB1-209ENST00000487676 SNX21Q969T3 373 aa18.59■□□□□ 0.57
HLA-DQB1-209ENST00000487676 SENP3Q9H4L4 574 aaPredicted RBP18.59■□□□□ 0.57
HLA-DQB1-209ENST00000487676 ELL2O00472 640 aaPredicted RBP18.59■□□□□ 0.57
HLA-DQB1-209ENST00000487676 MCM2P49736 904 aa18.59■□□□□ 0.57
HLA-DQB1-209ENST00000487676 FAM184AQ8NB25 1140 aa18.59■□□□□ 0.57
HLA-DQB1-209ENST00000487676 IFT57Q9NWB7 429 aa18.58■□□□□ 0.57
HLA-DQB1-209ENST00000487676 PCDHB15Q9Y5E8 787 aa18.58■□□□□ 0.57
HLA-DQB1-209ENST00000487676 INSRP06213 1382 aa18.58■□□□□ 0.57
HLA-DQB1-209ENST00000487676 MTHFSP49914 203 aa18.58■□□□□ 0.56
HLA-DQB1-209ENST00000487676 HDGFL2Q7Z4V5 671 aaPredicted RBP18.58■□□□□ 0.56
HLA-DQB1-209ENST00000487676 ZKSCAN5Q9Y2L8 839 aa18.58■□□□□ 0.56
HLA-DQB1-209ENST00000487676 SAFB2Q14151 953 aaKnown RBP eCLIP18.57■□□□□ 0.56
HLA-DQB1-209ENST00000487676 NOB1Q9ULX3 412 aaKnown RBP18.57■□□□□ 0.56
HLA-DQB1-209ENST00000487676 LMOD3Q0VAK6 560 aa18.57■□□□□ 0.56
HLA-DQB1-209ENST00000487676 OS9Q13438 667 aaPredicted RBP18.57■□□□□ 0.56
HLA-DQB1-209ENST00000487676 TRAK1Q9UPV9 953 aa18.57■□□□□ 0.56
HLA-DQB1-209ENST00000487676 PLEKHH1Q9ULM0 1364 aa18.57■□□□□ 0.56
HLA-DQB1-209ENST00000487676 MPNDQ8N594 471 aa18.56■□□□□ 0.56
HLA-DQB1-209ENST00000487676 FGD1P98174 961 aa18.56■□□□□ 0.56
HLA-DQB1-209ENST00000487676 SMC5Q8IY18 1101 aa18.56■□□□□ 0.56
HLA-DQB1-209ENST00000487676 HMGXB3Q12766 1538 aa18.56■□□□□ 0.56
HLA-DQB1-209ENST00000487676 UGGT2Q9NYU1 1516 aa18.56■□□□□ 0.56
HLA-DQB1-209ENST00000487676 TEX14Q8IWB6 1497 aa18.56■□□□□ 0.56
HLA-DQB1-209ENST00000487676 RAB3GAP1Q15042 981 aa18.56■□□□□ 0.56
HLA-DQB1-209ENST00000487676 PRIMPOLQ96LW4 560 aa18.55■□□□□ 0.56
HLA-DQB1-209ENST00000487676 TERF2IPQ9NYB0 399 aa18.55■□□□□ 0.56
HLA-DQB1-209ENST00000487676 NEK4P51957 841 aa18.55■□□□□ 0.56
HLA-DQB1-209ENST00000487676 TSR2Q969E8 191 aaKnown RBP18.55■□□□□ 0.56
HLA-DQB1-209ENST00000487676 C9orf84Q5VXU9 1444 aa18.55■□□□□ 0.56
HLA-DQB1-209ENST00000487676 PER1O15534 1290 aaPredicted RBP18.54■□□□□ 0.56
HLA-DQB1-209ENST00000487676 TEX35Q5T0J7 233 aa18.54■□□□□ 0.56
HLA-DQB1-209ENST00000487676 GOLGA6L19H0YKK7 550 aa18.54■□□□□ 0.56
HLA-DQB1-209ENST00000487676 RILPL2Q969X0 211 aa18.53■□□□□ 0.56
HLA-DQB1-209ENST00000487676 ZSCAN23Q3MJ62 389 aa18.53■□□□□ 0.56
HLA-DQB1-209ENST00000487676 EFCAB2Q5VUJ9 269 aa18.53■□□□□ 0.56
HLA-DQB1-209ENST00000487676 CDK13Q14004 1512 aaKnown RBP18.53■□□□□ 0.56
HLA-DQB1-209ENST00000487676 CCDC94Q9BW85 323 aaPredicted RBP18.53■□□□□ 0.56
HLA-DQB1-209ENST00000487676 TCOF1Q13428 1488 aaKnown RBP18.52■□□□□ 0.56
HLA-DQB1-209ENST00000487676 ANO2Q9NQ90 1003 aa18.52■□□□□ 0.56
HLA-DQB1-209ENST00000487676 GPRASP1Q5JY77 1395 aa18.52■□□□□ 0.56
HLA-DQB1-209ENST00000487676 DISP3Q9P2K9 1392 aa18.51■□□□□ 0.55
HLA-DQB1-209ENST00000487676 TROQ12816 1431 aaPredicted RBP18.51■□□□□ 0.55
HLA-DQB1-209ENST00000487676 NOL7Q9UMY1 257 aaKnown RBP18.51■□□□□ 0.55
HLA-DQB1-209ENST00000487676 BMP2KLQ5H9B9 411 aa18.5■□□□□ 0.55
HLA-DQB1-209ENST00000487676 PPP4R3BQ5MIZ7 849 aa18.5■□□□□ 0.55
HLA-DQB1-209ENST00000487676 ZMYM4Q5VZL5 1548 aa18.5■□□□□ 0.55
HLA-DQB1-209ENST00000487676 GTPBP4Q9BZE4 634 aaKnown RBP18.5■□□□□ 0.55
HLA-DQB1-209ENST00000487676 TMEM57Q8N5G2 664 aa18.5■□□□□ 0.55
HLA-DQB1-209ENST00000487676 THOC2Q8NI27 1593 aaKnown RBP18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 POLA1P09884 1462 aaPredicted RBP18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 GRIN2BQ13224 1484 aa18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 ABCA10Q8WWZ4 1543 aa18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 BLMP54132 1417 aaPredicted RBP18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 BECN2A8MW95 431 aa18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 DIAPH1O60610 1272 aaKnown RBP18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 HDAC1Q13547 482 aaPredicted RBP18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 SLC4A10Q6U841 1118 aa18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 ANTXR1Q9H6X2 564 aa18.49■□□□□ 0.55
HLA-DQB1-209ENST00000487676 TPM4P67936 248 aa18.48■□□□□ 0.55
HLA-DQB1-209ENST00000487676 GPS2Q13227 327 aa18.48■□□□□ 0.55
HLA-DQB1-209ENST00000487676 SMC3Q9UQE7 1217 aa18.48■□□□□ 0.55
HLA-DQB1-209ENST00000487676 PRDM2Q13029 1718 aa18.48■□□□□ 0.55
HLA-DQB1-209ENST00000487676 LRSAM1Q6UWE0 723 aa18.48■□□□□ 0.55
HLA-DQB1-209ENST00000487676 C1orf115Q9H7X2 142 aa18.48■□□□□ 0.55
HLA-DQB1-209ENST00000487676 CCDC112Q8NEF3 446 aa18.47■□□□□ 0.55
HLA-DQB1-209ENST00000487676 EVC2Q86UK5 1308 aa18.47■□□□□ 0.55
HLA-DQB1-209ENST00000487676 TPD52L1Q16890 204 aaPredicted RBP18.47■□□□□ 0.55
HLA-DQB1-209ENST00000487676 WDR33Q9C0J8 1336 aaKnown RBP18.46■□□□□ 0.55
HLA-DQB1-209ENST00000487676 JPH4Q96JJ6 628 aa18.46■□□□□ 0.55
HLA-DQB1-209ENST00000487676 CUL7Q14999 1698 aa18.46■□□□□ 0.55
HLA-DQB1-209ENST00000487676 PRG4Q92954 1404 aaPredicted RBP18.46■□□□□ 0.55
HLA-DQB1-209ENST00000487676 GNAI1P63096 354 aa18.46■□□□□ 0.55
HLA-DQB1-209ENST00000487676 SPC24Q8NBT2 197 aa18.46■□□□□ 0.55
HLA-DQB1-209ENST00000487676 BBXQ8WY36 941 aaPredicted RBP18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 PPP1R9BQ96SB3 815 aa18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 STK26Q9P289 416 aa18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 ERC2O15083 957 aa18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 CGNQ9P2M7 1197 aaKnown RBP18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 KIF3BO15066 747 aa18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 SSH1Q8WYL5 1049 aa18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 STK31Q9BXU1 1019 aa18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 CHMP3Q9Y3E7 222 aa18.45■□□□□ 0.54
HLA-DQB1-209ENST00000487676 ARGLU1Q9NWB6 273 aaPredicted RBP18.44■□□□□ 0.54
HLA-DQB1-209ENST00000487676 SPAG9O60271 1321 aaKnown RBP18.44■□□□□ 0.54
HLA-DQB1-209ENST00000487676 TRIM5Q9C035 493 aa18.44■□□□□ 0.54
HLA-DQB1-209ENST00000487676 RBM27Q9P2N5 1060 aaKnown RBP18.44■□□□□ 0.54
HLA-DQB1-209ENST00000487676 SNAPC4Q5SXM2 1469 aa18.44■□□□□ 0.54
HLA-DQB1-209ENST00000487676 TRIM27P14373 513 aa18.43■□□□□ 0.54
HLA-DQB1-209ENST00000487676 PRIM1P49642 420 aaKnown RBP18.43■□□□□ 0.54
HLA-DQB1-209ENST00000487676 TBC1D9Q6ZT07 1266 aa18.43■□□□□ 0.54
HLA-DQB1-209ENST00000487676 RTF1Q92541 710 aaKnown RBP18.43■□□□□ 0.54
HLA-DQB1-209ENST00000487676 PDE4CQ08493 712 aa18.43■□□□□ 0.54
HLA-DQB1-209ENST00000487676 UHRF1BP1Q6BDS2 1440 aa18.43■□□□□ 0.54
HLA-DQB1-209ENST00000487676 CAMSAP2Q08AD1 1489 aa18.43■□□□□ 0.54
HLA-DQB1-209ENST00000487676 TOPBP1Q92547 1522 aa18.42■□□□□ 0.54
HLA-DQB1-209ENST00000487676 GOLGA6L1Q8N7Z2 621 aa18.42■□□□□ 0.54
HLA-DQB1-209ENST00000487676 NAP1L2Q9ULW6 460 aaPredicted RBP18.42■□□□□ 0.54
HLA-DQB1-209ENST00000487676 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.42■□□□□ 0.54
HLA-DQB1-209ENST00000487676 RBM25P49756 843 aaKnown RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms