RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, human

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-215	ENST00000487620	TRAK1	Q9UPV9	953 aa		12.53	□□□□□ -0.4
ZNF3-215	ENST00000487620	SLC12A5	Q9H2X9	1139 aa		12.53	□□□□□ -0.4
ZNF3-215	ENST00000487620	PCDHB15	Q9Y5E8	787 aa		12.53	□□□□□ -0.4
ZNF3-215	ENST00000487620	MROH2A	A6NES4	1674 aa		12.52	□□□□□ -0.4
ZNF3-215	ENST00000487620	UPF2	Q9HAU5	1272 aa	Known RBP	12.52	□□□□□ -0.41
ZNF3-215	ENST00000487620	CFAP65	Q6ZU64	1925 aa	Known RBP	12.52	□□□□□ -0.41
ZNF3-215	ENST00000487620	VWDE	Q8N2E2	1590 aa		12.52	□□□□□ -0.41
ZNF3-215	ENST00000487620	POGK	Q9P215	609 aa		12.52	□□□□□ -0.41
ZNF3-215	ENST00000487620	IFT172	Q9UG01	1749 aa		12.51	□□□□□ -0.41
ZNF3-215	ENST00000487620	INO80	Q9ULG1	1556 aa	Predicted RBP	12.51	□□□□□ -0.41
ZNF3-215	ENST00000487620	NLRP1	Q9C000	1473 aa		12.5	□□□□□ -0.41
ZNF3-215	ENST00000487620	PDZRN3	Q9UPQ7	1066 aa		12.5	□□□□□ -0.41
ZNF3-215	ENST00000487620	FANCA	O15360	1455 aa		12.5	□□□□□ -0.41
ZNF3-215	ENST00000487620	MYO3A	Q8NEV4	1616 aa		12.5	□□□□□ -0.41
ZNF3-215	ENST00000487620	NEURL4	Q96JN8	1562 aa		12.5	□□□□□ -0.41
ZNF3-215	ENST00000487620	MTHFS	P49914	203 aa		12.5	□□□□□ -0.41
ZNF3-215	ENST00000487620	NOS1	P29475	1434 aa		12.5	□□□□□ -0.41
ZNF3-215	ENST00000487620	UHRF1BP1L	A0JNW5	1464 aa		12.49	□□□□□ -0.41
ZNF3-215	ENST00000487620	SBNO2	Q9Y2G9	1366 aa		12.49	□□□□□ -0.41
ZNF3-215	ENST00000487620	MROH1	Q8NDA8	1641 aa		12.48	□□□□□ -0.41
ZNF3-215	ENST00000487620	TMEM132E	Q6IEE7	984 aa		12.48	□□□□□ -0.41
ZNF3-215	ENST00000487620	WDR63	Q8IWG1	891 aa		12.48	□□□□□ -0.41
ZNF3-215	ENST00000487620	ARAP3	Q8WWN8	1544 aa		12.48	□□□□□ -0.41
ZNF3-215	ENST00000487620	QRICH2	Q9H0J4	1663 aa		12.48	□□□□□ -0.41
ZNF3-215	ENST00000487620	IQSEC2	Q5JU85	1478 aa		12.48	□□□□□ -0.41
ZNF3-215	ENST00000487620	CFAP53	Q96M91	514 aa		12.48	□□□□□ -0.41
ZNF3-215	ENST00000487620	RWDD1	Q9H446	243 aa	Predicted RBP	12.48	□□□□□ -0.41
ZNF3-215	ENST00000487620	AAMP	Q13685	434 aa		12.47	□□□□□ -0.41
ZNF3-215	ENST00000487620	SPRYD3	Q8NCJ5	442 aa		12.47	□□□□□ -0.41
ZNF3-215	ENST00000487620	TBC1D32	Q96NH3	1257 aa		12.47	□□□□□ -0.41
ZNF3-215	ENST00000487620	EFCAB6	Q5THR3	1501 aa		12.47	□□□□□ -0.41
ZNF3-215	ENST00000487620	ADGRL1	O94910	1474 aa		12.47	□□□□□ -0.41
ZNF3-215	ENST00000487620	PRKCSH	P14314	528 aa	Predicted RBP	12.47	□□□□□ -0.41
ZNF3-215	ENST00000487620	PPRC1	Q5VV67	1664 aa	Known RBP	12.47	□□□□□ -0.41
ZNF3-215	ENST00000487620	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.46	□□□□□ -0.41
ZNF3-215	ENST00000487620	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.46	□□□□□ -0.41
ZNF3-215	ENST00000487620	FTSJ3	Q8IY81	847 aa	Known RBP	12.46	□□□□□ -0.41
ZNF3-215	ENST00000487620	PHF23	Q9BUL5	403 aa	Predicted RBP	12.46	□□□□□ -0.41
ZNF3-215	ENST00000487620	TBC1D2	Q9BYX2	928 aa		12.46	□□□□□ -0.41
ZNF3-215	ENST00000487620	MYH16	Q9H6N6	1097 aa		12.46	□□□□□ -0.41
ZNF3-215	ENST00000487620	NRXN1	Q9ULB1	1477 aa		12.46	□□□□□ -0.42
ZNF3-215	ENST00000487620	ABCA9	Q8IUA7	1624 aa		12.45	□□□□□ -0.42
ZNF3-215	ENST00000487620	ZC3H13	Q5T200	1668 aa	Known RBP	12.45	□□□□□ -0.42
ZNF3-215	ENST00000487620	ZNF518A	Q6AHZ1	1483 aa		12.45	□□□□□ -0.42
ZNF3-215	ENST00000487620	ARX	Q96QS3	562 aa		12.45	□□□□□ -0.42
ZNF3-215	ENST00000487620	ANTXR1	Q9H6X2	564 aa		12.45	□□□□□ -0.42
ZNF3-215	ENST00000487620	EIF5B	O60841	1220 aa	Known RBP	12.45	□□□□□ -0.42
ZNF3-215	ENST00000487620	MVP	Q14764	893 aa	Known RBP	12.45	□□□□□ -0.42
ZNF3-215	ENST00000487620	TSR2	Q969E8	191 aa	Known RBP	12.44	□□□□□ -0.42
ZNF3-215	ENST00000487620	SETBP1	Q9Y6X0	1596 aa		12.44	□□□□□ -0.42
ZNF3-215	ENST00000487620	CCDC27	Q2M243	656 aa		12.44	□□□□□ -0.42
ZNF3-215	ENST00000487620	ZKSCAN2	Q63HK3	967 aa		12.44	□□□□□ -0.42
ZNF3-215	ENST00000487620	DZIP1L	Q8IYY4	767 aa	Known RBP	12.43	□□□□□ -0.42
ZNF3-215	ENST00000487620	FAM43A	Q8N2R8	423 aa		12.43	□□□□□ -0.42
ZNF3-215	ENST00000487620	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.43	□□□□□ -0.42
ZNF3-215	ENST00000487620	C14orf93	Q9H972	538 aa	Known RBP	12.43	□□□□□ -0.42
ZNF3-215	ENST00000487620	ADGRB3	O60242	1522 aa		12.43	□□□□□ -0.42
ZNF3-215	ENST00000487620	PPL	O60437	1756 aa		12.42	□□□□□ -0.42
ZNF3-215	ENST00000487620	MFAP1	P55081	439 aa	Known RBP	12.42	□□□□□ -0.42
ZNF3-215	ENST00000487620	SMC4	Q9NTJ3	1288 aa		12.42	□□□□□ -0.42
ZNF3-215	ENST00000487620	ZMYM3	Q14202	1370 aa		12.42	□□□□□ -0.42
ZNF3-215	ENST00000487620	GGT6	Q6P531	493 aa		12.41	□□□□□ -0.42
ZNF3-215	ENST00000487620	KIDINS220	Q9ULH0	1771 aa		12.41	□□□□□ -0.42
ZNF3-215	ENST00000487620	U2SURP	O15042	1029 aa	Known RBP	12.41	□□□□□ -0.42
ZNF3-215	ENST00000487620	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.41	□□□□□ -0.42
ZNF3-215	ENST00000487620	ITPRIP	Q8IWB1	547 aa		12.41	□□□□□ -0.42
ZNF3-215	ENST00000487620	USP32	Q8NFA0	1604 aa		12.4	□□□□□ -0.42
ZNF3-215	ENST00000487620	EXOSC9	Q06265	439 aa	Known RBP	12.4	□□□□□ -0.42
ZNF3-215	ENST00000487620	C22orf23	Q9BZE7	217 aa		12.4	□□□□□ -0.42
ZNF3-215	ENST00000487620	SENP3	Q9H4L4	574 aa	Predicted RBP	12.4	□□□□□ -0.42
ZNF3-215	ENST00000487620	ADGRB1	O14514	1584 aa		12.4	□□□□□ -0.42
ZNF3-215	ENST00000487620	L1TD1	Q5T7N2	865 aa	Known RBP	12.4	□□□□□ -0.42
ZNF3-215	ENST00000487620	EVC2	Q86UK5	1308 aa		12.39	□□□□□ -0.43
ZNF3-215	ENST00000487620	GZF1	Q9H116	711 aa	Predicted RBP	12.39	□□□□□ -0.43
ZNF3-215	ENST00000487620	CABP2	Q9NPB3	220 aa		12.39	□□□□□ -0.43
ZNF3-215	ENST00000487620	TRIM27	P14373	513 aa		12.39	□□□□□ -0.43
ZNF3-215	ENST00000487620	NPAT	Q14207	1427 aa		12.38	□□□□□ -0.43
ZNF3-215	ENST00000487620	ANKRD36B	Q8N2N9	1353 aa		12.38	□□□□□ -0.43
ZNF3-215	ENST00000487620	SSH1	Q8WYL5	1049 aa		12.37	□□□□□ -0.43
ZNF3-215	ENST00000487620	ADGRB2	O60241	1585 aa		12.37	□□□□□ -0.43
ZNF3-215	ENST00000487620	LMTK2	Q8IWU2	1503 aa		12.37	□□□□□ -0.43
ZNF3-215	ENST00000487620	MCM4	P33991	863 aa		12.37	□□□□□ -0.43
ZNF3-215	ENST00000487620	DDX19B	Q9UMR2	479 aa		12.37	□□□□□ -0.43
ZNF3-215	ENST00000487620	GLI2	P10070	1586 aa		12.37	□□□□□ -0.43
ZNF3-215	ENST00000487620	GGNBP2	Q9H3C7	697 aa		12.36	□□□□□ -0.43
ZNF3-215	ENST00000487620	TULP4	Q9NRJ4	1543 aa		12.36	□□□□□ -0.43
ZNF3-215	ENST00000487620	TMPO	P42166	694 aa	Known RBP	12.36	□□□□□ -0.43
ZNF3-215	ENST00000487620	ATF7IP	Q6VMQ6	1270 aa		12.36	□□□□□ -0.43
ZNF3-215	ENST00000487620	NOB1	Q9ULX3	412 aa	Known RBP	12.36	□□□□□ -0.43
ZNF3-215	ENST00000487620	NSD2	O96028	1365 aa		12.36	□□□□□ -0.43
ZNF3-215	ENST00000487620	GOLGA6L3	A6NEY3	463 aa		12.35	□□□□□ -0.43
ZNF3-215	ENST00000487620	CT47B1	P0C2W7	299 aa	Predicted RBP	12.35	□□□□□ -0.43
ZNF3-215	ENST00000487620	ARHGEF28	Q8N1W1	1705 aa	Known RBP	12.35	□□□□□ -0.43
ZNF3-215	ENST00000487620	HDAC1	Q13547	482 aa	Predicted RBP	12.35	□□□□□ -0.43
ZNF3-215	ENST00000487620	OSCAR	Q8IYS5	282 aa		12.35	□□□□□ -0.43
ZNF3-215	ENST00000487620	CHMP5	Q9NZZ3	219 aa		12.35	□□□□□ -0.43
ZNF3-215	ENST00000487620	CD109	Q6YHK3	1445 aa		12.35	□□□□□ -0.43
ZNF3-215	ENST00000487620	SRPK2	P78362	688 aa	Known RBP	12.34	□□□□□ -0.43
ZNF3-215	ENST00000487620	RSPH6A	Q9H0K4	717 aa		12.34	□□□□□ -0.43
ZNF3-215	ENST00000487620	TRIM35	Q9UPQ4	493 aa		12.34	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms