RNA–Protein interactions for RNA: ENST00000487539.1

CNN3-206, Transcript of calponin 3, humanhuman

TSL 2

Gene CNN3, Length 739 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-206ENST00000487539 VEGFBP49765 207 aa9.41□□□□□ -0.9
CNN3-206ENST00000487539 E2F4Q16254 413 aa9.41□□□□□ -0.9
CNN3-206ENST00000487539 HPS1Q92902 700 aa9.41□□□□□ -0.9
CNN3-206ENST00000487539 NESP48681 1621 aa9.41□□□□□ -0.9
CNN3-206ENST00000487539 ARIH1Q9Y4X5 557 aaPredicted RBP9.4□□□□□ -0.9
CNN3-206ENST00000487539 WNT7AO00755 349 aa9.39□□□□□ -0.91
CNN3-206ENST00000487539 ZBTB24O43167 697 aaPredicted RBP9.39□□□□□ -0.91
CNN3-206ENST00000487539 VSIG10Q8N0Z9 540 aa9.39□□□□□ -0.91
CNN3-206ENST00000487539 ADGRG1Q9Y653 693 aa9.38□□□□□ -0.91
CNN3-206ENST00000487539 FAM161AQ3B820 660 aa9.36□□□□□ -0.91
CNN3-206ENST00000487539 NPAS3Q8IXF0 933 aa9.36□□□□□ -0.91
CNN3-206ENST00000487539 FAM160A2Q8N612 972 aaPredicted RBP9.36□□□□□ -0.91
CNN3-206ENST00000487539 MRGPRX2Q96LB1 330 aa9.36□□□□□ -0.91
CNN3-206ENST00000487539 ERBB4Q15303 1308 aa9.35□□□□□ -0.91
CNN3-206ENST00000487539 H3BM21 787 aa9.34□□□□□ -0.91
CNN3-206ENST00000487539 P3H3Q8IVL6 736 aa9.33□□□□□ -0.92
CNN3-206ENST00000487539 THAP11Q96EK4 314 aa9.33□□□□□ -0.92
CNN3-206ENST00000487539 KCNMA1Q12791 1236 aa9.32□□□□□ -0.92
CNN3-206ENST00000487539 PRDM9Q9NQV7 894 aa9.32□□□□□ -0.92
CNN3-206ENST00000487539 THOC2Q8NI27 1593 aaKnown RBP9.32□□□□□ -0.92
CNN3-206ENST00000487539 GSK3AP49840 483 aa9.3□□□□□ -0.92
CNN3-206ENST00000487539 KDM2AQ9Y2K7 1162 aa9.3□□□□□ -0.92
CNN3-206ENST00000487539 FMNL1O95466 1100 aaPredicted RBP9.29□□□□□ -0.92
CNN3-206ENST00000487539 TRIM32Q13049 653 aa9.29□□□□□ -0.92
CNN3-206ENST00000487539 PTGDRQ13258 359 aa9.29□□□□□ -0.92
CNN3-206ENST00000487539 MORN1Q5T089 497 aa9.29□□□□□ -0.92
CNN3-206ENST00000487539 RSPH4AQ5TD94 716 aa9.28□□□□□ -0.92
CNN3-206ENST00000487539 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.27□□□□□ -0.93
CNN3-206ENST00000487539 TMEM151AQ8N4L1 468 aa9.27□□□□□ -0.93
CNN3-206ENST00000487539 ARHGEF1Q92888 912 aaKnown RBP9.27□□□□□ -0.93
CNN3-206ENST00000487539 BMP1P13497 986 aa9.26□□□□□ -0.93
CNN3-206ENST00000487539 KCNV2Q8TDN2 545 aa9.26□□□□□ -0.93
CNN3-206ENST00000487539 ZCCHC6Q5VYS8 1495 aaKnown RBP9.26□□□□□ -0.93
CNN3-206ENST00000487539 SLC24A1O60721 1099 aa9.25□□□□□ -0.93
CNN3-206ENST00000487539 FECHP22830 423 aa9.25□□□□□ -0.93
CNN3-206ENST00000487539 TRIM46Q7Z4K8 759 aa9.25□□□□□ -0.93
CNN3-206ENST00000487539 SLC27A5Q9Y2P5 690 aa9.25□□□□□ -0.93
CNN3-206ENST00000487539 NCAPD3P42695 1498 aa9.25□□□□□ -0.93
CNN3-206ENST00000487539 DCAF1Q9Y4B6 1507 aa9.25□□□□□ -0.93
CNN3-206ENST00000487539 SMARCA2P51531 1590 aa9.24□□□□□ -0.93
CNN3-206ENST00000487539 REPIN1Q9BWE0 567 aaKnown RBP9.24□□□□□ -0.93
CNN3-206ENST00000487539 GDF11O95390 407 aa9.23□□□□□ -0.93
CNN3-206ENST00000487539 FUT2Q10981 343 aa9.23□□□□□ -0.93
CNN3-206ENST00000487539 ATP6V1AP38606 617 aa9.22□□□□□ -0.93
CNN3-206ENST00000487539 RC3H1Q5TC82 1133 aaKnown RBP9.22□□□□□ -0.93
CNN3-206ENST00000487539 BRICD5Q6PL45 260 aa9.22□□□□□ -0.93
CNN3-206ENST00000487539 RASSF7Q02833 373 aa9.21□□□□□ -0.94
CNN3-206ENST00000487539 ALDH1A1P00352 501 aa9.2□□□□□ -0.94
CNN3-206ENST00000487539 SALL2Q9Y467 1007 aaPredicted RBP9.2□□□□□ -0.94
CNN3-206ENST00000487539 CAPN5O15484 640 aaPredicted RBP9.19□□□□□ -0.94
CNN3-206ENST00000487539 MSS51Q4VC12 460 aa9.19□□□□□ -0.94
CNN3-206ENST00000487539 MLLT3P42568 568 aaPredicted RBP9.18□□□□□ -0.94
CNN3-206ENST00000487539 KIF21AQ7Z4S6 1674 aa9.18□□□□□ -0.94
CNN3-206ENST00000487539 RDH13Q8NBN7 331 aa9.18□□□□□ -0.94
CNN3-206ENST00000487539 PXYLP1Q8TE99 480 aa9.18□□□□□ -0.94
CNN3-206ENST00000487539 RIMBP3CA6NJZ7 1639 aa9.17□□□□□ -0.94
CNN3-206ENST00000487539 RIMBP3BA6NNM3 1639 aa9.17□□□□□ -0.94
CNN3-206ENST00000487539 RIMBP3Q9UFD9 1639 aa9.17□□□□□ -0.94
CNN3-206ENST00000487539 BAZ1AQ9NRL2 1556 aaPredicted RBP9.17□□□□□ -0.94
CNN3-206ENST00000487539 XP32Q5T750 250 aa9.17□□□□□ -0.94
CNN3-206ENST00000487539 RNF19BQ6ZMZ0 732 aa9.17□□□□□ -0.94
CNN3-206ENST00000487539 ATAD2BQ9ULI0 1458 aa9.16□□□□□ -0.94
CNN3-206ENST00000487539 SKOR1P84550 965 aa9.16□□□□□ -0.94
CNN3-206ENST00000487539 NUTM2FA1L443 756 aa9.15□□□□□ -0.94
CNN3-206ENST00000487539 OATP04181 439 aa9.15□□□□□ -0.94
CNN3-206ENST00000487539 ZFP42Q96MM3 310 aa9.15□□□□□ -0.94
CNN3-206ENST00000487539 VSIG8P0DPA2 414 aa9.13□□□□□ -0.95
CNN3-206ENST00000487539 MMP16P51512 607 aa9.12□□□□□ -0.95
CNN3-206ENST00000487539 CYB5RLQ6IPT4 315 aa9.12□□□□□ -0.95
CNN3-206ENST00000487539 WNT7BP56706 349 aa9.11□□□□□ -0.95
CNN3-206ENST00000487539 CCDC24Q8N4L8 307 aa9.11□□□□□ -0.95
CNN3-206ENST00000487539 DDX11L8A8MPP1 907 aa9.1□□□□□ -0.95
CNN3-206ENST00000487539 GCGRP47871 477 aa9.1□□□□□ -0.95
CNN3-206ENST00000487539 GPAT2Q6NUI2 795 aa9.1□□□□□ -0.95
CNN3-206ENST00000487539 WASF2Q9Y6W5 498 aa9.1□□□□□ -0.95
CNN3-206ENST00000487539 METTL3Q86U44 580 aaKnown RBP9.09□□□□□ -0.95
CNN3-206ENST00000487539 SOBPA7XYQ1 873 aa9.08□□□□□ -0.96
CNN3-206ENST00000487539 SEMA3EO15041 775 aa9.08□□□□□ -0.96
CNN3-206ENST00000487539 DAXXQ9UER7 740 aaPredicted RBP9.08□□□□□ -0.96
CNN3-206ENST00000487539 RNF225M0QZC1 329 aaPredicted RBP9.07□□□□□ -0.96
CNN3-206ENST00000487539 SIAH2O43255 324 aa9.07□□□□□ -0.96
CNN3-206ENST00000487539 FCHSD2O94868 740 aa9.07□□□□□ -0.96
CNN3-206ENST00000487539 SMYD5Q6GMV2 418 aa9.07□□□□□ -0.96
CNN3-206ENST00000487539 ADAMTS8Q9UP79 889 aa9.07□□□□□ -0.96
CNN3-206ENST00000487539 LAMC3Q9Y6N6 1575 aa9.07□□□□□ -0.96
CNN3-206ENST00000487539 ARHGEF11O15085 1522 aa9.06□□□□□ -0.96
CNN3-206ENST00000487539 PDS5BQ9NTI5 1447 aa9.05□□□□□ -0.96
CNN3-206ENST00000487539 HMGXB3Q12766 1538 aa9.05□□□□□ -0.96
CNN3-206ENST00000487539 TESPA1A2RU30 521 aaPredicted RBP9.05□□□□□ -0.96
CNN3-206ENST00000487539 TULP1O00294 542 aaPredicted RBP9.05□□□□□ -0.96
CNN3-206ENST00000487539 DXOO77932 396 aaKnown RBP9.05□□□□□ -0.96
CNN3-206ENST00000487539 KRTAP4-8Q9BYQ9 185 aa9.05□□□□□ -0.96
CNN3-206ENST00000487539 MRC2Q9UBG0 1479 aa9.04□□□□□ -0.96
CNN3-206ENST00000487539 Q3C1V9 767 aa9.04□□□□□ -0.96
CNN3-206ENST00000487539 IGHA1P01876 353 aa9.03□□□□□ -0.96
CNN3-206ENST00000487539 EHBP1Q8NDI1 1231 aa9.03□□□□□ -0.96
CNN3-206ENST00000487539 WDR62O43379 1518 aa9.03□□□□□ -0.96
CNN3-206ENST00000487539 GRIPAP1Q4V328 841 aa9.02□□□□□ -0.97
CNN3-206ENST00000487539 PURBQ96QR8 312 aaKnown RBP9.02□□□□□ -0.97
CNN3-206ENST00000487539 USB1Q9BQ65 265 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms