RNA–Protein interactions for RNA: ENST00000487485.1

TOP3B-216, Transcript of DNA topoisomerase III beta, humanhuman

TSL 3

Gene TOP3B, Length 725 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-216ENST00000487485 XRN1Q8IZH2 1706 aaKnown RBP15.49■□□□□ 0.07
TOP3B-216ENST00000487485 IFT172Q9UG01 1749 aa15.49■□□□□ 0.07
TOP3B-216ENST00000487485 CCER1Q8TC90 406 aaPredicted RBP15.49■□□□□ 0.07
TOP3B-216ENST00000487485 SETBP1Q9Y6X0 1596 aa15.47■□□□□ 0.07
TOP3B-216ENST00000487485 ADGRL3Q9HAR2 1447 aa15.46■□□□□ 0.07
TOP3B-216ENST00000487485 VGFO15240 615 aaPredicted RBP15.46■□□□□ 0.07
TOP3B-216ENST00000487485 ORAI2Q96SN7 254 aa15.46■□□□□ 0.07
TOP3B-216ENST00000487485 CLSPNQ9HAW4 1339 aa15.45■□□□□ 0.06
TOP3B-216ENST00000487485 USP21Q9UK80 565 aa15.45■□□□□ 0.06
TOP3B-216ENST00000487485 C1orf167Q5SNV9 1468 aa15.45■□□□□ 0.06
TOP3B-216ENST00000487485 DCAF11Q8TEB1 546 aa15.44■□□□□ 0.06
TOP3B-216ENST00000487485 SOS2Q07890 1332 aaPredicted RBP15.43■□□□□ 0.06
TOP3B-216ENST00000487485 TRPC5Q9UL62 973 aaPredicted RBP15.43■□□□□ 0.06
TOP3B-216ENST00000487485 KDM2AQ9Y2K7 1162 aa15.43■□□□□ 0.06
TOP3B-216ENST00000487485 ATAD2Q6PL18 1390 aa15.42■□□□□ 0.06
TOP3B-216ENST00000487485 FNBP4Q8N3X1 1017 aaPredicted RBP15.42■□□□□ 0.06
TOP3B-216ENST00000487485 ADGRF5Q8IZF2 1346 aa15.42■□□□□ 0.06
TOP3B-216ENST00000487485 NALCNQ8IZF0 1738 aa15.41■□□□□ 0.06
TOP3B-216ENST00000487485 L3MBTL2Q969R5 705 aa15.4■□□□□ 0.06
TOP3B-216ENST00000487485 STAC3Q96MF2 364 aa15.4■□□□□ 0.06
TOP3B-216ENST00000487485 EP400Q96L91 3159 aa15.39■□□□□ 0.05
TOP3B-216ENST00000487485 ZRANB1Q9UGI0 708 aa15.39■□□□□ 0.05
TOP3B-216ENST00000487485 MYOM2P54296 1465 aa15.39■□□□□ 0.05
TOP3B-216ENST00000487485 TONSLQ96HA7 1378 aa15.38■□□□□ 0.05
TOP3B-216ENST00000487485 ROBO2Q9HCK4 1378 aa15.38■□□□□ 0.05
TOP3B-216ENST00000487485 ATRNO75882 1429 aa15.38■□□□□ 0.05
TOP3B-216ENST00000487485 LAMC1P11047 1609 aa15.36■□□□□ 0.05
TOP3B-216ENST00000487485 PTCH1Q13635 1447 aa15.36■□□□□ 0.05
TOP3B-216ENST00000487485 NRXN1Q9ULB1 1477 aa15.36■□□□□ 0.05
TOP3B-216ENST00000487485 PIK3C2GO75747 1445 aa15.35■□□□□ 0.05
TOP3B-216ENST00000487485 BCL9LQ86UU0 1499 aa15.33■□□□□ 0.05
TOP3B-216ENST00000487485 XPCQ01831 940 aaPredicted RBP15.33■□□□□ 0.04
TOP3B-216ENST00000487485 ESCO1Q5FWF5 840 aa15.33■□□□□ 0.04
TOP3B-216ENST00000487485 CFAP70Q5T0N1 1121 aa15.33■□□□□ 0.04
TOP3B-216ENST00000487485 CCDC125Q86Z20 511 aa15.33■□□□□ 0.04
TOP3B-216ENST00000487485 FOXO3O43524 673 aa15.32■□□□□ 0.04
TOP3B-216ENST00000487485 GJD4Q96KN9 370 aaPredicted RBP15.32■□□□□ 0.04
TOP3B-216ENST00000487485 C14orf93Q9H972 538 aaKnown RBP15.32■□□□□ 0.04
TOP3B-216ENST00000487485 TIMELESSQ9UNS1 1208 aa15.32■□□□□ 0.04
TOP3B-216ENST00000487485 NPHP3Q7Z494 1330 aa15.3■□□□□ 0.04
TOP3B-216ENST00000487485 PRAG1Q86YV5 1406 aa15.3■□□□□ 0.04
TOP3B-216ENST00000487485 COL22A1Q8NFW1 1626 aaPredicted RBP15.3■□□□□ 0.04
TOP3B-216ENST00000487485 KIAA1210Q9ULL0 1709 aa15.29■□□□□ 0.04
TOP3B-216ENST00000487485 TMEM132EQ6IEE7 984 aa15.29■□□□□ 0.04
TOP3B-216ENST00000487485 NUTM2FA1L443 756 aa15.28■□□□□ 0.04
TOP3B-216ENST00000487485 PXDNQ92626 1479 aa15.27■□□□□ 0.04
TOP3B-216ENST00000487485 NBPF8Q3BBV2 869 aa15.27■□□□□ 0.04
TOP3B-216ENST00000487485 DEFB132Q7Z7B7 95 aa15.27■□□□□ 0.04
TOP3B-216ENST00000487485 TRPM1Q7Z4N2 1603 aa15.26■□□□□ 0.03
TOP3B-216ENST00000487485 WAPLQ7Z5K2 1190 aa15.26■□□□□ 0.03
TOP3B-216ENST00000487485 UNC5CLQ8IV45 518 aa15.26■□□□□ 0.03
TOP3B-216ENST00000487485 STK26Q9P289 416 aa15.25■□□□□ 0.03
TOP3B-216ENST00000487485 NBPF1Q3BBV0 1214 aa15.24■□□□□ 0.03
TOP3B-216ENST00000487485 ADGRB1O14514 1584 aa15.24■□□□□ 0.03
TOP3B-216ENST00000487485 MARF1Q9Y4F3 1742 aaKnown RBP15.23■□□□□ 0.03
TOP3B-216ENST00000487485 RALGAPBQ86X10 1494 aa15.23■□□□□ 0.03
TOP3B-216ENST00000487485 YTHDC2Q9H6S0 1430 aaKnown RBP15.23■□□□□ 0.03
TOP3B-216ENST00000487485 LRPPRCP42704 1394 aaKnown RBP15.23■□□□□ 0.03
TOP3B-216ENST00000487485 BLMP54132 1417 aaPredicted RBP15.22■□□□□ 0.03
TOP3B-216ENST00000487485 KNDC1Q76NI1 1749 aa15.22■□□□□ 0.03
TOP3B-216ENST00000487485 SPATA31A3Q5VYP0 1347 aa15.21■□□□□ 0.03
TOP3B-216ENST00000487485 GLI3P10071 1580 aa15.21■□□□□ 0.03
TOP3B-216ENST00000487485 CDC42BPGQ6DT37 1551 aa15.21■□□□□ 0.03
TOP3B-216ENST00000487485 SEPT12Q8IYM1 358 aa15.21■□□□□ 0.03
TOP3B-216ENST00000487485 SLIT2O94813 1529 aa15.21■□□□□ 0.03
TOP3B-216ENST00000487485 ABCC11Q96J66 1382 aa15.21■□□□□ 0.02
TOP3B-216ENST00000487485 KRT28Q7Z3Y7 464 aa15.2■□□□□ 0.02
TOP3B-216ENST00000487485 ROCK2O75116 1388 aaKnown RBP15.2■□□□□ 0.02
TOP3B-216ENST00000487485 PLEKHH1Q9ULM0 1364 aa15.2■□□□□ 0.02
TOP3B-216ENST00000487485 BRWD3Q6RI45 1802 aa15.2■□□□□ 0.02
TOP3B-216ENST00000487485 PLEKHG5O94827 1062 aa15.19■□□□□ 0.02
TOP3B-216ENST00000487485 CABLES1Q8TDN4 633 aa15.19■□□□□ 0.02
TOP3B-216ENST00000487485 TRAK1Q9UPV9 953 aa15.19■□□□□ 0.02
TOP3B-216ENST00000487485 TECPR2O15040 1411 aa15.18■□□□□ 0.02
TOP3B-216ENST00000487485 SF3B2Q13435 895 aaKnown RBP15.18■□□□□ 0.02
TOP3B-216ENST00000487485 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.17■□□□□ 0.02
TOP3B-216ENST00000487485 ONECUT3O60422 494 aaPredicted RBP15.17■□□□□ 0.02
TOP3B-216ENST00000487485 VPS72Q15906 364 aa15.17■□□□□ 0.02
TOP3B-216ENST00000487485 SIRT1Q96EB6 747 aa15.17■□□□□ 0.02
TOP3B-216ENST00000487485 ARHGEF28Q8N1W1 1705 aaKnown RBP15.17■□□□□ 0.02
TOP3B-216ENST00000487485 CARD11Q9BXL7 1154 aa15.16■□□□□ 0.02
TOP3B-216ENST00000487485 DLC1Q96QB1 1528 aa15.16■□□□□ 0.02
TOP3B-216ENST00000487485 GPRASP1Q5JY77 1395 aa15.15■□□□□ 0.02
TOP3B-216ENST00000487485 HAP1P54257 671 aaPredicted RBP15.15■□□□□ 0.02
TOP3B-216ENST00000487485 KRT27Q7Z3Y8 459 aa15.15■□□□□ 0.02
TOP3B-216ENST00000487485 PRAM1Q96QH2 718 aa15.15■□□□□ 0.02
TOP3B-216ENST00000487485 POGKQ9P215 609 aa15.15■□□□□ 0.02
TOP3B-216ENST00000487485 CCDC9Q9Y3X0 531 aaKnown RBP15.15■□□□□ 0.02
TOP3B-216ENST00000487485 PSDA5PKW4 1024 aaPredicted RBP15.14■□□□□ 0.01
TOP3B-216ENST00000487485 FAM83GA6ND36 823 aa15.13■□□□□ 0.01
TOP3B-216ENST00000487485 PHF8Q9UPP1 1060 aa15.13■□□□□ 0.01
TOP3B-216ENST00000487485 PSME1Q06323 249 aa15.12■□□□□ 0.01
TOP3B-216ENST00000487485 SAFB2Q14151 953 aaKnown RBP eCLIP15.12■□□□□ 0.01
TOP3B-216ENST00000487485 LMOD2Q6P5Q4 547 aa15.12■□□□□ 0.01
TOP3B-216ENST00000487485 USP32Q8NFA0 1604 aa15.12■□□□□ 0.01
TOP3B-216ENST00000487485 FMN2Q9NZ56 1722 aa15.11■□□□□ 0.01
TOP3B-216ENST00000487485 RGPD8O14715 1765 aaPredicted RBP15.11■□□□□ 0.01
TOP3B-216ENST00000487485 TNS3Q68CZ2 1445 aa15.1■□□□□ 0.01
TOP3B-216ENST00000487485 A0A0G2JS52 829 aa15.09■□□□□ 0.01
TOP3B-216ENST00000487485 BAG6P46379 1132 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms