RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 ESCO1Q5FWF5 840 aa18.1■□□□□ 0.49
VPS16-208ENST00000487461 C8orf37Q96NL8 207 aa18.1■□□□□ 0.49
VPS16-208ENST00000487461 ABCC11Q96J66 1382 aa18.09■□□□□ 0.49
VPS16-208ENST00000487461 ADAMTS2O95450 1211 aa18.08■□□□□ 0.48
VPS16-208ENST00000487461 C14orf93Q9H972 538 aaKnown RBP18.08■□□□□ 0.48
VPS16-208ENST00000487461 PIK3C2GO75747 1445 aa18.07■□□□□ 0.48
VPS16-208ENST00000487461 PLEKHH1Q9ULM0 1364 aa18.07■□□□□ 0.48
VPS16-208ENST00000487461 QTRT2Q9H974 415 aaKnown RBP18.07■□□□□ 0.48
VPS16-208ENST00000487461 TECPR2O15040 1411 aa18.06■□□□□ 0.48
VPS16-208ENST00000487461 RAB3GAP2Q9H2M9 1393 aa18.06■□□□□ 0.48
VPS16-208ENST00000487461 LAMC1P11047 1609 aa18.06■□□□□ 0.48
VPS16-208ENST00000487461 NUTM2FA1L443 756 aa18.06■□□□□ 0.48
VPS16-208ENST00000487461 FOXO3O43524 673 aa18.05■□□□□ 0.48
VPS16-208ENST00000487461 CFAP70Q5T0N1 1121 aa18.05■□□□□ 0.48
VPS16-208ENST00000487461 NGLY1Q96IV0 654 aa18.05■□□□□ 0.48
VPS16-208ENST00000487461 IFT172Q9UG01 1749 aa18.04■□□□□ 0.48
VPS16-208ENST00000487461 UPF1Q92900 1129 aaKnown RBP eCLIP18.04■□□□□ 0.48
VPS16-208ENST00000487461 SIRT1Q96EB6 747 aa18.04■□□□□ 0.48
VPS16-208ENST00000487461 YTHDC2Q9H6S0 1430 aaKnown RBP18.04■□□□□ 0.48
VPS16-208ENST00000487461 NPHP3Q7Z494 1330 aa18.03■□□□□ 0.48
VPS16-208ENST00000487461 XPCQ01831 940 aaPredicted RBP18.03■□□□□ 0.48
VPS16-208ENST00000487461 RBM6P78332 1123 aaKnown RBP18.02■□□□□ 0.48
VPS16-208ENST00000487461 CDC42BPGQ6DT37 1551 aa18.02■□□□□ 0.48
VPS16-208ENST00000487461 CDK12Q9NYV4 1490 aaPredicted RBP18.01■□□□□ 0.47
VPS16-208ENST00000487461 NRXN1Q9ULB1 1477 aa18.01■□□□□ 0.47
VPS16-208ENST00000487461 DHX57Q6P158 1386 aaKnown RBP18■□□□□ 0.47
VPS16-208ENST00000487461 FNBP4Q8N3X1 1017 aaPredicted RBP17.99■□□□□ 0.47
VPS16-208ENST00000487461 USP21Q9UK80 565 aa17.99■□□□□ 0.47
VPS16-208ENST00000487461 PXDNQ92626 1479 aa17.98■□□□□ 0.47
VPS16-208ENST00000487461 MYOM2P54296 1465 aa17.97■□□□□ 0.47
VPS16-208ENST00000487461 KNDC1Q76NI1 1749 aa17.96■□□□□ 0.47
VPS16-208ENST00000487461 SAFB2Q14151 953 aaKnown RBP eCLIP17.96■□□□□ 0.47
VPS16-208ENST00000487461 PRAM1Q96QH2 718 aa17.96■□□□□ 0.47
VPS16-208ENST00000487461 HRCP23327 699 aa17.95■□□□□ 0.46
VPS16-208ENST00000487461 KRT28Q7Z3Y7 464 aa17.95■□□□□ 0.46
VPS16-208ENST00000487461 TRPC5Q9UL62 973 aaPredicted RBP17.95■□□□□ 0.46
VPS16-208ENST00000487461 KDM2AQ9Y2K7 1162 aa17.95■□□□□ 0.46
VPS16-208ENST00000487461 RGS12O14924 1447 aa17.95■□□□□ 0.46
VPS16-208ENST00000487461 COL22A1Q8NFW1 1626 aaPredicted RBP17.94■□□□□ 0.46
VPS16-208ENST00000487461 DCAF11Q8TEB1 546 aa17.93■□□□□ 0.46
VPS16-208ENST00000487461 POGKQ9P215 609 aa17.93■□□□□ 0.46
VPS16-208ENST00000487461 PHF8Q9UPP1 1060 aa17.93■□□□□ 0.46
VPS16-208ENST00000487461 SPATA31A3Q5VYP0 1347 aa17.93■□□□□ 0.46
VPS16-208ENST00000487461 FMN2Q9NZ56 1722 aa17.92■□□□□ 0.46
VPS16-208ENST00000487461 TRAK1Q9UPV9 953 aa17.91■□□□□ 0.46
VPS16-208ENST00000487461 ATRNO75882 1429 aa17.89■□□□□ 0.46
VPS16-208ENST00000487461 BCL9LQ86UU0 1499 aa17.89■□□□□ 0.45
VPS16-208ENST00000487461 PSME1Q06323 249 aa17.88■□□□□ 0.45
VPS16-208ENST00000487461 PMFBP1Q8TBY8 1022 aa17.87■□□□□ 0.45
VPS16-208ENST00000487461 STAC3Q96MF2 364 aa17.87■□□□□ 0.45
VPS16-208ENST00000487461 HIRIP3Q9BW71 556 aaPredicted RBP17.87■□□□□ 0.45
VPS16-208ENST00000487461 DLC1Q96QB1 1528 aa17.87■□□□□ 0.45
VPS16-208ENST00000487461 ADGRB1O14514 1584 aa17.87■□□□□ 0.45
VPS16-208ENST00000487461 CABLES1Q8TDN4 633 aa17.86■□□□□ 0.45
VPS16-208ENST00000487461 RGPD8O14715 1765 aaPredicted RBP17.85■□□□□ 0.45
VPS16-208ENST00000487461 KIF1AQ12756 1690 aa17.85■□□□□ 0.45
VPS16-208ENST00000487461 MINK1Q8N4C8 1332 aaPredicted RBP17.85■□□□□ 0.45
VPS16-208ENST00000487461 GJD4Q96KN9 370 aaPredicted RBP17.85■□□□□ 0.45
VPS16-208ENST00000487461 SBNO1A3KN83 1393 aa17.84■□□□□ 0.45
VPS16-208ENST00000487461 PLEKHG5O94827 1062 aa17.84■□□□□ 0.45
VPS16-208ENST00000487461 UNC5CLQ8IV45 518 aa17.84■□□□□ 0.45
VPS16-208ENST00000487461 LMOD2Q6P5Q4 547 aa17.83■□□□□ 0.44
VPS16-208ENST00000487461 TNS3Q68CZ2 1445 aa17.82■□□□□ 0.44
VPS16-208ENST00000487461 ANKARQ7Z5J8 1434 aa17.82■□□□□ 0.44
VPS16-208ENST00000487461 PRR36Q9H6K5 1346 aa17.82■□□□□ 0.44
VPS16-208ENST00000487461 WASLO00401 505 aaPredicted RBP17.82■□□□□ 0.44
VPS16-208ENST00000487461 ATAD2Q6PL18 1390 aa17.81■□□□□ 0.44
VPS16-208ENST00000487461 HAP1P54257 671 aaPredicted RBP17.81■□□□□ 0.44
VPS16-208ENST00000487461 SLIT2O94813 1529 aa17.81■□□□□ 0.44
VPS16-208ENST00000487461 MARF1Q9Y4F3 1742 aaKnown RBP17.81■□□□□ 0.44
VPS16-208ENST00000487461 USP32Q8NFA0 1604 aa17.8■□□□□ 0.44
VPS16-208ENST00000487461 ADGRB2O60241 1585 aa17.79■□□□□ 0.44
VPS16-208ENST00000487461 FAM83GA6ND36 823 aa17.78■□□□□ 0.44
VPS16-208ENST00000487461 ARHGEF10O15013 1369 aa17.78■□□□□ 0.44
VPS16-208ENST00000487461 EIF3AQ14152 1382 aaKnown RBP17.76■□□□□ 0.43
VPS16-208ENST00000487461 GPRASP1Q5JY77 1395 aa17.76■□□□□ 0.43
VPS16-208ENST00000487461 RALGAPBQ86X10 1494 aa17.75■□□□□ 0.43
VPS16-208ENST00000487461 VPS72Q15906 364 aa17.75■□□□□ 0.43
VPS16-208ENST00000487461 NGDNQ8NEJ9 315 aaKnown RBP17.75■□□□□ 0.43
VPS16-208ENST00000487461 NUDT16Q96DE0 195 aaKnown RBP17.75■□□□□ 0.43
VPS16-208ENST00000487461 TULP4Q9NRJ4 1543 aa17.74■□□□□ 0.43
VPS16-208ENST00000487461 NBPF1Q3BBV0 1214 aa17.73■□□□□ 0.43
VPS16-208ENST00000487461 SEPT12Q8IYM1 358 aa17.73■□□□□ 0.43
VPS16-208ENST00000487461 CDK19Q9BWU1 502 aa17.73■□□□□ 0.43
VPS16-208ENST00000487461 GLI3P10071 1580 aa17.73■□□□□ 0.43
VPS16-208ENST00000487461 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.72■□□□□ 0.43
VPS16-208ENST00000487461 ONECUT3O60422 494 aaPredicted RBP17.72■□□□□ 0.43
VPS16-208ENST00000487461 CCDC9Q9Y3X0 531 aaKnown RBP17.72■□□□□ 0.43
VPS16-208ENST00000487461 PAK3O75914 559 aaPredicted RBP17.71■□□□□ 0.43
VPS16-208ENST00000487461 CCDC125Q86Z20 511 aa17.71■□□□□ 0.43
VPS16-208ENST00000487461 TRPM3Q9HCF6 1732 aaPredicted RBP17.69■□□□□ 0.42
VPS16-208ENST00000487461 BTG4Q9NY30 223 aa17.69■□□□□ 0.42
VPS16-208ENST00000487461 ARHGEF28Q8N1W1 1705 aaKnown RBP17.68■□□□□ 0.42
VPS16-208ENST00000487461 ABCA3Q99758 1704 aa17.67■□□□□ 0.42
VPS16-208ENST00000487461 CCDC61Q9Y6R9 512 aa17.67■□□□□ 0.42
VPS16-208ENST00000487461 ATP7BP35670 1465 aa17.67■□□□□ 0.42
VPS16-208ENST00000487461 ALS2Q96Q42 1657 aa17.67■□□□□ 0.42
VPS16-208ENST00000487461 NBPF8Q3BBV2 869 aa17.66■□□□□ 0.42
VPS16-208ENST00000487461 PLCH1Q4KWH8 1693 aa17.65■□□□□ 0.42
VPS16-208ENST00000487461 NWD2Q9ULI1 1742 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms