RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 ZMYM3Q14202 1370 aa15.65■□□□□ 0.1
COL3A1-206ENST00000487010 MROH1Q8NDA8 1641 aa15.64■□□□□ 0.09
COL3A1-206ENST00000487010 MORC1Q86VD1 984 aa15.64■□□□□ 0.09
COL3A1-206ENST00000487010 PHF23Q9BUL5 403 aaPredicted RBP15.64■□□□□ 0.09
COL3A1-206ENST00000487010 MROH2AA6NES4 1674 aa15.64■□□□□ 0.09
COL3A1-206ENST00000487010 WDR63Q8IWG1 891 aa15.64■□□□□ 0.09
COL3A1-206ENST00000487010 NSD3Q9BZ95 1437 aa15.64■□□□□ 0.09
COL3A1-206ENST00000487010 ABCA9Q8IUA7 1624 aa15.63■□□□□ 0.09
COL3A1-206ENST00000487010 NEUROD2Q15784 382 aa15.63■□□□□ 0.09
COL3A1-206ENST00000487010 TCP11L2Q8N4U5 519 aa15.63■□□□□ 0.09
COL3A1-206ENST00000487010 PCDHB15Q9Y5E8 787 aa15.63■□□□□ 0.09
COL3A1-206ENST00000487010 FANCAO15360 1455 aa15.63■□□□□ 0.09
COL3A1-206ENST00000487010 RRP7AQ9Y3A4 280 aaKnown RBP15.63■□□□□ 0.09
COL3A1-206ENST00000487010 SETBP1Q9Y6X0 1596 aa15.62■□□□□ 0.09
COL3A1-206ENST00000487010 RLBP1P12271 317 aa15.62■□□□□ 0.09
COL3A1-206ENST00000487010 EFCAB6Q5THR3 1501 aa15.61■□□□□ 0.09
COL3A1-206ENST00000487010 ZC3H13Q5T200 1668 aaKnown RBP15.61■□□□□ 0.09
COL3A1-206ENST00000487010 CCDC27Q2M243 656 aa15.6■□□□□ 0.09
COL3A1-206ENST00000487010 TBC1D32Q96NH3 1257 aa15.6■□□□□ 0.09
COL3A1-206ENST00000487010 ANTXR1Q9H6X2 564 aa15.6■□□□□ 0.09
COL3A1-206ENST00000487010 PDZRN3Q9UPQ7 1066 aa15.6■□□□□ 0.09
COL3A1-206ENST00000487010 TNNQ9UQP3 1299 aa15.6■□□□□ 0.09
COL3A1-206ENST00000487010 TNNT2P45379 298 aaPredicted RBP15.59■□□□□ 0.09
COL3A1-206ENST00000487010 SLC12A5Q9H2X9 1139 aa15.59■□□□□ 0.09
COL3A1-206ENST00000487010 UPF2Q9HAU5 1272 aaKnown RBP15.59■□□□□ 0.09
COL3A1-206ENST00000487010 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.59■□□□□ 0.09
COL3A1-206ENST00000487010 USP32Q8NFA0 1604 aa15.59■□□□□ 0.09
COL3A1-206ENST00000487010 QRICH2Q9H0J4 1663 aa15.59■□□□□ 0.09
COL3A1-206ENST00000487010 SLKQ9H2G2 1235 aaPredicted RBP15.59■□□□□ 0.09
COL3A1-206ENST00000487010 RWDD1Q9H446 243 aaPredicted RBP15.59■□□□□ 0.09
COL3A1-206ENST00000487010 POGKQ9P215 609 aa15.59■□□□□ 0.09
COL3A1-206ENST00000487010 NOS1P29475 1434 aa15.59■□□□□ 0.09
COL3A1-206ENST00000487010 ADGRL1O94910 1474 aa15.58■□□□□ 0.09
COL3A1-206ENST00000487010 ZNF518AQ6AHZ1 1483 aa15.58■□□□□ 0.09
COL3A1-206ENST00000487010 PPRC1Q5VV67 1664 aaKnown RBP15.58■□□□□ 0.08
COL3A1-206ENST00000487010 NCBP3Q53F19 620 aaKnown RBP15.58■□□□□ 0.08
COL3A1-206ENST00000487010 FAM43AQ8N2R8 423 aa15.58■□□□□ 0.08
COL3A1-206ENST00000487010 ADGRB3O60242 1522 aa15.57■□□□□ 0.08
COL3A1-206ENST00000487010 PRKCSHP14314 528 aaPredicted RBP15.57■□□□□ 0.08
COL3A1-206ENST00000487010 MTHFSP49914 203 aa15.57■□□□□ 0.08
COL3A1-206ENST00000487010 BCL2L13Q9BXK5 485 aa15.57■□□□□ 0.08
COL3A1-206ENST00000487010 TRAK1Q9UPV9 953 aa15.57■□□□□ 0.08
COL3A1-206ENST00000487010 CFAP53Q96M91 514 aa15.56■□□□□ 0.08
COL3A1-206ENST00000487010 TBC1D2Q9BYX2 928 aa15.56■□□□□ 0.08
COL3A1-206ENST00000487010 MYH16Q9H6N6 1097 aa15.56■□□□□ 0.08
COL3A1-206ENST00000487010 LMTK2Q8IWU2 1503 aa15.56■□□□□ 0.08
COL3A1-206ENST00000487010 C14orf93Q9H972 538 aaKnown RBP15.55■□□□□ 0.08
COL3A1-206ENST00000487010 PPLO60437 1756 aa15.55■□□□□ 0.08
COL3A1-206ENST00000487010 MVPQ14764 893 aaKnown RBP15.54■□□□□ 0.08
COL3A1-206ENST00000487010 ADGRB1O14514 1584 aa15.54■□□□□ 0.08
COL3A1-206ENST00000487010 KIDINS220Q9ULH0 1771 aa15.53■□□□□ 0.08
COL3A1-206ENST00000487010 CHGAP10645 457 aaKnown RBP15.52■□□□□ 0.08
COL3A1-206ENST00000487010 ZKSCAN2Q63HK3 967 aa15.52■□□□□ 0.08
COL3A1-206ENST00000487010 ADGRB2O60241 1585 aa15.52■□□□□ 0.07
COL3A1-206ENST00000487010 L1TD1Q5T7N2 865 aaKnown RBP15.52■□□□□ 0.07
COL3A1-206ENST00000487010 CT47B1P0C2W7 299 aaPredicted RBP15.5■□□□□ 0.07
COL3A1-206ENST00000487010 DZIP1LQ8IYY4 767 aaKnown RBP15.5■□□□□ 0.07
COL3A1-206ENST00000487010 PUS7Q96PZ0 661 aaKnown RBP15.5■□□□□ 0.07
COL3A1-206ENST00000487010 NSD2O96028 1365 aa15.5■□□□□ 0.07
COL3A1-206ENST00000487010 U2AF1L5P0DN76 240 aaPredicted RBP15.5■□□□□ 0.07
COL3A1-206ENST00000487010 U2AF1Q01081 240 aaKnown RBP eCLIP15.5■□□□□ 0.07
COL3A1-206ENST00000487010 TMEM132EQ6IEE7 984 aa15.5■□□□□ 0.07
COL3A1-206ENST00000487010 FTSJ3Q8IY81 847 aaKnown RBP15.49■□□□□ 0.07
COL3A1-206ENST00000487010 ANKRD36BQ8N2N9 1353 aa15.48■□□□□ 0.07
COL3A1-206ENST00000487010 RPGRIP1LQ68CZ1 1315 aa15.47■□□□□ 0.07
COL3A1-206ENST00000487010 HDAC1Q13547 482 aaPredicted RBP15.47■□□□□ 0.07
COL3A1-206ENST00000487010 C22orf23Q9BZE7 217 aa15.47■□□□□ 0.07
COL3A1-206ENST00000487010 CFAP65Q6ZU64 1925 aaKnown RBP15.47■□□□□ 0.07
COL3A1-206ENST00000487010 NPATQ14207 1427 aa15.47■□□□□ 0.07
COL3A1-206ENST00000487010 EVC2Q86UK5 1308 aa15.46■□□□□ 0.07
COL3A1-206ENST00000487010 MCM4P33991 863 aa15.46■□□□□ 0.07
COL3A1-206ENST00000487010 RSPH6AQ9H0K4 717 aa15.46■□□□□ 0.07
COL3A1-206ENST00000487010 ASXL2Q76L83 1435 aa15.45■□□□□ 0.06
COL3A1-206ENST00000487010 TSR2Q969E8 191 aaKnown RBP15.45■□□□□ 0.06
COL3A1-206ENST00000487010 SMC4Q9NTJ3 1288 aa15.45■□□□□ 0.06
COL3A1-206ENST00000487010 TULP4Q9NRJ4 1543 aa15.45■□□□□ 0.06
COL3A1-206ENST00000487010 GLI2P10070 1586 aa15.45■□□□□ 0.06
COL3A1-206ENST00000487010 TRIM27P14373 513 aa15.45■□□□□ 0.06
COL3A1-206ENST00000487010 EXOSC9Q06265 439 aaKnown RBP15.45■□□□□ 0.06
COL3A1-206ENST00000487010 SPRYD3Q8NCJ5 442 aa15.45■□□□□ 0.06
COL3A1-206ENST00000487010 ARHGEF28Q8N1W1 1705 aaKnown RBP15.45■□□□□ 0.06
COL3A1-206ENST00000487010 MFAP1P55081 439 aaKnown RBP15.44■□□□□ 0.06
COL3A1-206ENST00000487010 PLEKHF1Q96S99 279 aa15.44■□□□□ 0.06
COL3A1-206ENST00000487010 CHMP5Q9NZZ3 219 aa15.44■□□□□ 0.06
COL3A1-206ENST00000487010 DDX19BQ9UMR2 479 aa15.44■□□□□ 0.06
COL3A1-206ENST00000487010 FSD2A1L4K1 749 aa15.43■□□□□ 0.06
COL3A1-206ENST00000487010 SSH1Q8WYL5 1049 aa15.43■□□□□ 0.06
COL3A1-206ENST00000487010 CD109Q6YHK3 1445 aa15.43■□□□□ 0.06
COL3A1-206ENST00000487010 TMPOP42166 694 aaKnown RBP15.42■□□□□ 0.06
COL3A1-206ENST00000487010 ATF7IPQ6VMQ6 1270 aa15.42■□□□□ 0.06
COL3A1-206ENST00000487010 ITPRIPQ8IWB1 547 aa15.42■□□□□ 0.06
COL3A1-206ENST00000487010 SMC5Q8IY18 1101 aa15.42■□□□□ 0.06
COL3A1-206ENST00000487010 TRIM35Q9UPQ4 493 aa15.42■□□□□ 0.06
COL3A1-206ENST00000487010 GOLGA6L3A6NEY3 463 aa15.42■□□□□ 0.06
COL3A1-206ENST00000487010 RRAGDQ9NQL2 400 aaPredicted RBP15.42■□□□□ 0.06
COL3A1-206ENST00000487010 EIF5BO60841 1220 aaKnown RBP15.41■□□□□ 0.06
COL3A1-206ENST00000487010 XRCC6P12956 609 aaKnown RBP eCLIP15.41■□□□□ 0.06
COL3A1-206ENST00000487010 GGT6Q6P531 493 aa15.41■□□□□ 0.06
COL3A1-206ENST00000487010 IL16Q14005 1332 aa15.41■□□□□ 0.06
COL3A1-206ENST00000487010 CABP2Q9NPB3 220 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms