RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 XRN1Q8IZH2 1706 aaKnown RBP12.92□□□□□ -0.34
COL12A1-208ENST00000486533 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.92□□□□□ -0.34
COL12A1-208ENST00000486533 ATF3P18847 181 aa12.91□□□□□ -0.34
COL12A1-208ENST00000486533 ZNF692Q9BU19 519 aaPredicted RBP12.91□□□□□ -0.34
COL12A1-208ENST00000486533 C19orf44Q9H6X5 657 aa12.91□□□□□ -0.34
COL12A1-208ENST00000486533 METP08581 1390 aa12.91□□□□□ -0.34
COL12A1-208ENST00000486533 PHLPP1O60346 1717 aa12.91□□□□□ -0.34
COL12A1-208ENST00000486533 CADPS2Q86UW7 1296 aa12.9□□□□□ -0.34
COL12A1-208ENST00000486533 VGFO15240 615 aaPredicted RBP12.9□□□□□ -0.35
COL12A1-208ENST00000486533 FXR2P51116 673 aaKnown RBP eCLIP12.9□□□□□ -0.35
COL12A1-208ENST00000486533 CCDC144AA2RUR9 1427 aa12.89□□□□□ -0.35
COL12A1-208ENST00000486533 PPLO60437 1756 aa12.88□□□□□ -0.35
COL12A1-208ENST00000486533 NEUROD1Q13562 356 aa12.88□□□□□ -0.35
COL12A1-208ENST00000486533 MPHOSPH9Q99550 1183 aa12.88□□□□□ -0.35
COL12A1-208ENST00000486533 RPGRIP1LQ68CZ1 1315 aa12.88□□□□□ -0.35
COL12A1-208ENST00000486533 DHX57Q6P158 1386 aaKnown RBP12.87□□□□□ -0.35
COL12A1-208ENST00000486533 DCCP43146 1447 aa12.86□□□□□ -0.35
COL12A1-208ENST00000486533 SETD5Q9C0A6 1442 aa12.86□□□□□ -0.35
COL12A1-208ENST00000486533 RGL3Q3MIN7 710 aa12.86□□□□□ -0.35
COL12A1-208ENST00000486533 SETD1AO15047 1707 aaKnown RBP12.85□□□□□ -0.35
COL12A1-208ENST00000486533 JCADQ9P266 1359 aa12.84□□□□□ -0.35
COL12A1-208ENST00000486533 COL16A1Q07092 1604 aaPredicted RBP12.84□□□□□ -0.35
COL12A1-208ENST00000486533 NALCNQ8IZF0 1738 aa12.84□□□□□ -0.35
COL12A1-208ENST00000486533 ADGRL3Q9HAR2 1447 aa12.83□□□□□ -0.35
COL12A1-208ENST00000486533 AHDC1Q5TGY3 1603 aaPredicted RBP12.83□□□□□ -0.36
COL12A1-208ENST00000486533 BRINP3Q76B58 766 aa12.82□□□□□ -0.36
COL12A1-208ENST00000486533 SPDYE1Q8NFV5 336 aaPredicted RBP12.82□□□□□ -0.36
COL12A1-208ENST00000486533 RAB3GAP2Q9H2M9 1393 aa12.82□□□□□ -0.36
COL12A1-208ENST00000486533 MST1RQ04912 1400 aa12.82□□□□□ -0.36
COL12A1-208ENST00000486533 PTCH1Q13635 1447 aa12.82□□□□□ -0.36
COL12A1-208ENST00000486533 SPATA31E1Q6ZUB1 1445 aa12.82□□□□□ -0.36
COL12A1-208ENST00000486533 GTF3C3Q9Y5Q9 886 aa12.81□□□□□ -0.36
COL12A1-208ENST00000486533 ROBO2Q9HCK4 1378 aa12.81□□□□□ -0.36
COL12A1-208ENST00000486533 ASXL1Q8IXJ9 1541 aa12.81□□□□□ -0.36
COL12A1-208ENST00000486533 ADGRF5Q8IZF2 1346 aa12.81□□□□□ -0.36
COL12A1-208ENST00000486533 IFT172Q9UG01 1749 aa12.8□□□□□ -0.36
COL12A1-208ENST00000486533 ANKRD30BQ9BXX2 1392 aa12.8□□□□□ -0.36
COL12A1-208ENST00000486533 RGS17Q9UGC6 210 aaPredicted RBP12.8□□□□□ -0.36
COL12A1-208ENST00000486533 SHPRHQ149N8 1683 aa12.78□□□□□ -0.36
COL12A1-208ENST00000486533 PRAG1Q86YV5 1406 aa12.78□□□□□ -0.36
COL12A1-208ENST00000486533 SPATA31A6Q5VVP1 1343 aa12.78□□□□□ -0.36
COL12A1-208ENST00000486533 NHSL1Q5SYE7 1610 aa12.77□□□□□ -0.36
COL12A1-208ENST00000486533 MEX3CQ5U5Q3 659 aaKnown RBP12.77□□□□□ -0.37
COL12A1-208ENST00000486533 STK26Q9P289 416 aa12.77□□□□□ -0.37
COL12A1-208ENST00000486533 PIK3C2GO75747 1445 aa12.76□□□□□ -0.37
COL12A1-208ENST00000486533 CLEC11AQ9Y240 323 aa12.76□□□□□ -0.37
COL12A1-208ENST00000486533 LRP6O75581 1613 aa12.75□□□□□ -0.37
COL12A1-208ENST00000486533 MYT1Q01538 1121 aa12.75□□□□□ -0.37
COL12A1-208ENST00000486533 POTEAQ6S8J7 498 aa12.75□□□□□ -0.37
COL12A1-208ENST00000486533 DDX17Q92841 729 aaKnown RBP12.75□□□□□ -0.37
COL12A1-208ENST00000486533 C1orf167Q5SNV9 1468 aa12.75□□□□□ -0.37
COL12A1-208ENST00000486533 NUTM2BA6NNL0 878 aaPredicted RBP12.74□□□□□ -0.37
COL12A1-208ENST00000486533 NUTM2EB1AL46 878 aaPredicted RBP12.74□□□□□ -0.37
COL12A1-208ENST00000486533 TMEM132EQ6IEE7 984 aa12.74□□□□□ -0.37
COL12A1-208ENST00000486533 NUTM2AQ8IVF1 878 aaPredicted RBP12.74□□□□□ -0.37
COL12A1-208ENST00000486533 LRRC59Q96AG4 307 aaKnown RBP12.73□□□□□ -0.37
COL12A1-208ENST00000486533 TIMELESSQ9UNS1 1208 aa12.73□□□□□ -0.37
COL12A1-208ENST00000486533 LRPPRCP42704 1394 aaKnown RBP12.73□□□□□ -0.37
COL12A1-208ENST00000486533 MIER1Q8N108 512 aa12.73□□□□□ -0.37
COL12A1-208ENST00000486533 ORAI2Q96SN7 254 aa12.73□□□□□ -0.37
COL12A1-208ENST00000486533 KNDC1Q76NI1 1749 aa12.72□□□□□ -0.37
COL12A1-208ENST00000486533 CDC42BPGQ6DT37 1551 aa12.72□□□□□ -0.37
COL12A1-208ENST00000486533 TECPR2O15040 1411 aa12.72□□□□□ -0.37
COL12A1-208ENST00000486533 WAPLQ7Z5K2 1190 aa12.72□□□□□ -0.37
COL12A1-208ENST00000486533 MYOM2P54296 1465 aa12.71□□□□□ -0.37
COL12A1-208ENST00000486533 YTHDC2Q9H6S0 1430 aaKnown RBP12.71□□□□□ -0.37
COL12A1-208ENST00000486533 LAMC1P11047 1609 aa12.71□□□□□ -0.37
COL12A1-208ENST00000486533 ABCC11Q96J66 1382 aa12.71□□□□□ -0.38
COL12A1-208ENST00000486533 NRXN1Q9ULB1 1477 aa12.7□□□□□ -0.38
COL12A1-208ENST00000486533 PLEKHH1Q9ULM0 1364 aa12.69□□□□□ -0.38
COL12A1-208ENST00000486533 ESCO1Q5FWF5 840 aa12.69□□□□□ -0.38
COL12A1-208ENST00000486533 CFAP70Q5T0N1 1121 aa12.69□□□□□ -0.38
COL12A1-208ENST00000486533 C14orf93Q9H972 538 aaKnown RBP12.69□□□□□ -0.38
COL12A1-208ENST00000486533 PNPLA6Q8IY17 1366 aa12.69□□□□□ -0.38
COL12A1-208ENST00000486533 NUTM2FA1L443 756 aa12.69□□□□□ -0.38
COL12A1-208ENST00000486533 ZNF772Q68DY9 489 aaPredicted RBP12.69□□□□□ -0.38
COL12A1-208ENST00000486533 YTHDC1Q96MU7 727 aaKnown RBP12.68□□□□□ -0.38
COL12A1-208ENST00000486533 SOS2Q07890 1332 aaPredicted RBP12.67□□□□□ -0.38
COL12A1-208ENST00000486533 SP7Q8TDD2 431 aaPredicted RBP12.67□□□□□ -0.38
COL12A1-208ENST00000486533 NPHP3Q7Z494 1330 aa12.67□□□□□ -0.38
COL12A1-208ENST00000486533 PRKAR2AP13861 404 aaKnown RBP12.66□□□□□ -0.38
COL12A1-208ENST00000486533 C8orf37Q96NL8 207 aa12.66□□□□□ -0.38
COL12A1-208ENST00000486533 KDM2AQ9Y2K7 1162 aa12.66□□□□□ -0.38
COL12A1-208ENST00000486533 FMN2Q9NZ56 1722 aa12.66□□□□□ -0.38
COL12A1-208ENST00000486533 SAFB2Q14151 953 aaKnown RBP eCLIP12.65□□□□□ -0.38
COL12A1-208ENST00000486533 DCAF11Q8TEB1 546 aa12.65□□□□□ -0.38
COL12A1-208ENST00000486533 AFF2P51816 1311 aa12.65□□□□□ -0.38
COL12A1-208ENST00000486533 HAX1O00165 279 aa12.64□□□□□ -0.39
COL12A1-208ENST00000486533 FOXO3O43524 673 aa12.64□□□□□ -0.39
COL12A1-208ENST00000486533 ADAMTS2O95450 1211 aa12.64□□□□□ -0.39
COL12A1-208ENST00000486533 XPCQ01831 940 aaPredicted RBP12.64□□□□□ -0.39
COL12A1-208ENST00000486533 PRAM1Q96QH2 718 aa12.64□□□□□ -0.39
COL12A1-208ENST00000486533 SIRT1Q96EB6 747 aa12.64□□□□□ -0.39
COL12A1-208ENST00000486533 POGKQ9P215 609 aa12.64□□□□□ -0.39
COL12A1-208ENST00000486533 PXDNQ92626 1479 aa12.62□□□□□ -0.39
COL12A1-208ENST00000486533 ADGRB1O14514 1584 aa12.62□□□□□ -0.39
COL12A1-208ENST00000486533 RXRBP28702 533 aa12.62□□□□□ -0.39
COL12A1-208ENST00000486533 KIF1AQ12756 1690 aa12.62□□□□□ -0.39
COL12A1-208ENST00000486533 DLC1Q96QB1 1528 aa12.62□□□□□ -0.39
COL12A1-208ENST00000486533 RGPD8O14715 1765 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms