RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 RBM42Q9BTD8 480 aaKnown RBP12.8□□□□□ -0.36
SRGAP3-207ENST00000485983 OFD1O75665 1012 aa12.8□□□□□ -0.36
SRGAP3-207ENST00000485983 STAC3Q96MF2 364 aa12.8□□□□□ -0.36
SRGAP3-207ENST00000485983 FAM177BA6PVY3 158 aa12.8□□□□□ -0.36
SRGAP3-207ENST00000485983 EPS15P42566 896 aa12.8□□□□□ -0.36
SRGAP3-207ENST00000485983 SART3Q15020 963 aaKnown RBP12.8□□□□□ -0.36
SRGAP3-207ENST00000485983 SLC3A2P08195 630 aaKnown RBP12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 ZFYVE27Q5T4F4 411 aa12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 MIA2Q96PC5 1412 aa12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 NUTM2BA6NNL0 878 aaPredicted RBP12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 NUTM2EB1AL46 878 aaPredicted RBP12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 NUTM2AQ8IVF1 878 aaPredicted RBP12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 MTMR7Q9Y216 660 aa12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 NAP1L1P55209 391 aaKnown RBP12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 FAM161AQ3B820 660 aa12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 ESCO1Q5FWF5 840 aa12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 SMC3Q9UQE7 1217 aa12.79□□□□□ -0.36
SRGAP3-207ENST00000485983 RUSC2Q8N2Y8 1516 aa12.78□□□□□ -0.36
SRGAP3-207ENST00000485983 VPS37CA5D8V6 355 aaPredicted RBP12.78□□□□□ -0.36
SRGAP3-207ENST00000485983 UBTFL1P0CB47 393 aaPredicted RBP12.78□□□□□ -0.36
SRGAP3-207ENST00000485983 SLC4A3P48751 1232 aa12.78□□□□□ -0.36
SRGAP3-207ENST00000485983 CCDC73Q6ZRK6 1079 aa12.78□□□□□ -0.36
SRGAP3-207ENST00000485983 STRN4Q9NRL3 753 aa12.78□□□□□ -0.36
SRGAP3-207ENST00000485983 RDXP35241 583 aaKnown RBP12.78□□□□□ -0.36
SRGAP3-207ENST00000485983 PLEKHO1Q53GL0 409 aaPredicted RBP12.78□□□□□ -0.36
SRGAP3-207ENST00000485983 ABTB2Q8N961 1025 aa12.77□□□□□ -0.36
SRGAP3-207ENST00000485983 RUNDC1Q96C34 613 aa12.77□□□□□ -0.36
SRGAP3-207ENST00000485983 HMOX1P09601 288 aa12.77□□□□□ -0.37
SRGAP3-207ENST00000485983 CDR1P51861 262 aa12.77□□□□□ -0.37
SRGAP3-207ENST00000485983 INTS3Q68E01 1043 aaKnown RBP12.77□□□□□ -0.37
SRGAP3-207ENST00000485983 HMGB2P26583 209 aaKnown RBP12.77□□□□□ -0.37
SRGAP3-207ENST00000485983 GNL3LQ9NVN8 582 aaKnown RBP12.77□□□□□ -0.37
SRGAP3-207ENST00000485983 HOMER1Q86YM7 354 aa12.76□□□□□ -0.37
SRGAP3-207ENST00000485983 TXNDC2Q86VQ3 553 aa12.76□□□□□ -0.37
SRGAP3-207ENST00000485983 FANCD2Q9BXW9 1451 aa12.76□□□□□ -0.37
SRGAP3-207ENST00000485983 SASS6Q6UVJ0 657 aa12.75□□□□□ -0.37
SRGAP3-207ENST00000485983 CCDC173Q0VFZ6 552 aa12.75□□□□□ -0.37
SRGAP3-207ENST00000485983 TATP17735 454 aaPredicted RBP12.75□□□□□ -0.37
SRGAP3-207ENST00000485983 GAS2L2Q8NHY3 880 aa12.75□□□□□ -0.37
SRGAP3-207ENST00000485983 ZNF592Q92610 1267 aa12.75□□□□□ -0.37
SRGAP3-207ENST00000485983 PATL2C9JE40 543 aaKnown RBP12.75□□□□□ -0.37
SRGAP3-207ENST00000485983 USP47Q96K76 1375 aa12.74□□□□□ -0.37
SRGAP3-207ENST00000485983 RRP12Q5JTH9 1297 aaKnown RBP12.74□□□□□ -0.37
SRGAP3-207ENST00000485983 FOSBP53539 338 aa12.74□□□□□ -0.37
SRGAP3-207ENST00000485983 HSP90AB2PQ58FF8 381 aa12.74□□□□□ -0.37
SRGAP3-207ENST00000485983 CLASRPQ8N2M8 674 aaKnown RBP12.74□□□□□ -0.37
SRGAP3-207ENST00000485983 PSMA5P28066 241 aa12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 CDK5RAP3Q96JB5 506 aa12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 CCDC30Q5VVM6 783 aa12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 GGNBP2Q9H3C7 697 aa12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 OLFM4Q6UX06 510 aa12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 THEMISQ8N1K5 641 aaPredicted RBP12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 FSD1Q9BTV5 496 aa12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 CRBNQ96SW2 442 aa12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 CNNM1Q9NRU3 951 aa12.73□□□□□ -0.37
SRGAP3-207ENST00000485983 NINLQ9Y2I6 1382 aa12.72□□□□□ -0.37
SRGAP3-207ENST00000485983 RUFY1Q96T51 708 aa12.72□□□□□ -0.37
SRGAP3-207ENST00000485983 SMG6Q86US8 1419 aaKnown RBP12.72□□□□□ -0.37
SRGAP3-207ENST00000485983 GNAI3P08754 354 aa12.72□□□□□ -0.37
SRGAP3-207ENST00000485983 RRP1P56182 461 aaKnown RBP12.72□□□□□ -0.37
SRGAP3-207ENST00000485983 ATP2B2Q01814 1243 aa12.71□□□□□ -0.37
SRGAP3-207ENST00000485983 TOM1L2Q6ZVM7 507 aa12.71□□□□□ -0.37
SRGAP3-207ENST00000485983 CNTROBQ8N137 903 aa12.71□□□□□ -0.37
SRGAP3-207ENST00000485983 CABP2Q9NPB3 220 aa12.71□□□□□ -0.38
SRGAP3-207ENST00000485983 KRT18P05783 430 aaKnown RBP12.7□□□□□ -0.38
SRGAP3-207ENST00000485983 TXLNAP40222 546 aa12.7□□□□□ -0.38
SRGAP3-207ENST00000485983 CCDC158Q5M9N0 1113 aa12.7□□□□□ -0.38
SRGAP3-207ENST00000485983 NUCB2P80303 420 aa12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 SYCP1Q15431 976 aa12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 PDE4AP27815 886 aa12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 RBM5P52756 815 aaKnown RBP eCLIP12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 CABP4P57796 275 aa12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 AK7Q96M32 723 aa12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 NAT10Q9H0A0 1025 aaKnown RBP12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 PRKRIP1Q9H875 184 aaPredicted RBP12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 SDF4Q9BRK5 362 aa12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 RAD54L2Q9Y4B4 1467 aa12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 EXOC6Q8TAG9 804 aa12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 DNAJC2Q99543 621 aaKnown RBP12.69□□□□□ -0.38
SRGAP3-207ENST00000485983 SURF6O75683 361 aaKnown RBP12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 HIP1O00291 1037 aa12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 DDX54Q8TDD1 881 aaKnown RBP12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 TTC39AQ5SRH9 613 aa12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 DNAJC5BQ9UF47 199 aa12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 ERC1Q8IUD2 1116 aa12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 LNPKQ9C0E8 428 aa12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 MYO6Q9UM54 1294 aa12.68□□□□□ -0.38
SRGAP3-207ENST00000485983 ACBD3Q9H3P7 528 aa12.67□□□□□ -0.38
SRGAP3-207ENST00000485983 WDHD1O75717 1129 aaPredicted RBP12.67□□□□□ -0.38
SRGAP3-207ENST00000485983 SPG7Q9UQ90 795 aa12.67□□□□□ -0.38
SRGAP3-207ENST00000485983 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.67□□□□□ -0.38
SRGAP3-207ENST00000485983 ATP2B1P20020 1258 aa12.67□□□□□ -0.38
SRGAP3-207ENST00000485983 NACAP1Q9BZK3 213 aa12.67□□□□□ -0.38
SRGAP3-207ENST00000485983 MYOM3Q5VTT5 1437 aa12.67□□□□□ -0.38
SRGAP3-207ENST00000485983 TMEM132EQ6IEE7 984 aa12.67□□□□□ -0.38
SRGAP3-207ENST00000485983 AAMPQ13685 434 aa12.66□□□□□ -0.38
SRGAP3-207ENST00000485983 MPHOSPH8Q99549 860 aa12.66□□□□□ -0.38
SRGAP3-207ENST00000485983 CHMP5Q9NZZ3 219 aa12.66□□□□□ -0.38
SRGAP3-207ENST00000485983 PDCL3Q9H2J4 239 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms