RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-208ENST00000485627 UBR1Q8IWV7 1749 aa13.1□□□□□ -0.31
CTSA-208ENST00000485627 HOXD11P31277 338 aaPredicted RBP13.09□□□□□ -0.31
CTSA-208ENST00000485627 POGKQ9P215 609 aa13.09□□□□□ -0.31
CTSA-208ENST00000485627 SBNO2Q9Y2G9 1366 aa13.08□□□□□ -0.31
CTSA-208ENST00000485627 YTHDC2Q9H6S0 1430 aaKnown RBP13.08□□□□□ -0.32
CTSA-208ENST00000485627 PLEKHG1Q9ULL1 1385 aa13.07□□□□□ -0.32
CTSA-208ENST00000485627 LTKP29376 864 aa13.07□□□□□ -0.32
CTSA-208ENST00000485627 MED14O60244 1454 aa13.06□□□□□ -0.32
CTSA-208ENST00000485627 CCER2I3L3R5 266 aa13.06□□□□□ -0.32
CTSA-208ENST00000485627 SLIT1O75093 1534 aa13.06□□□□□ -0.32
CTSA-208ENST00000485627 LRPPRCP42704 1394 aaKnown RBP13.06□□□□□ -0.32
CTSA-208ENST00000485627 ARHGAP23Q9P227 1491 aa13.05□□□□□ -0.32
CTSA-208ENST00000485627 PRAM1Q96QH2 718 aa13.05□□□□□ -0.32
CTSA-208ENST00000485627 EVC2Q86UK5 1308 aa13.05□□□□□ -0.32
CTSA-208ENST00000485627 ASXL1Q8IXJ9 1541 aa13.04□□□□□ -0.32
CTSA-208ENST00000485627 SAFB2Q14151 953 aaKnown RBP eCLIP13.04□□□□□ -0.32
CTSA-208ENST00000485627 SETD1AO15047 1707 aaKnown RBP13.04□□□□□ -0.32
CTSA-208ENST00000485627 ABCC11Q96J66 1382 aa13.04□□□□□ -0.32
CTSA-208ENST00000485627 PANK3Q9H999 370 aa13.03□□□□□ -0.32
CTSA-208ENST00000485627 PUS7Q96PZ0 661 aaKnown RBP13.02□□□□□ -0.33
CTSA-208ENST00000485627 PRKRIP1Q9H875 184 aaPredicted RBP13.02□□□□□ -0.33
CTSA-208ENST00000485627 METP08581 1390 aa13.02□□□□□ -0.33
CTSA-208ENST00000485627 QRICH2Q9H0J4 1663 aa13.02□□□□□ -0.33
CTSA-208ENST00000485627 ARHGEF28Q8N1W1 1705 aaKnown RBP13.02□□□□□ -0.33
CTSA-208ENST00000485627 CNGB1Q14028 1251 aaPredicted RBP13.01□□□□□ -0.33
CTSA-208ENST00000485627 RBM33Q96EV2 1170 aaKnown RBP13.01□□□□□ -0.33
CTSA-208ENST00000485627 YTHDC1Q96MU7 727 aaKnown RBP13.01□□□□□ -0.33
CTSA-208ENST00000485627 SLC26A8Q96RN1 970 aa13.01□□□□□ -0.33
CTSA-208ENST00000485627 TBX22Q9Y458 520 aa13.01□□□□□ -0.33
CTSA-208ENST00000485627 DLC1Q96QB1 1528 aa13.01□□□□□ -0.33
CTSA-208ENST00000485627 NRXN3Q9Y4C0 1643 aa13□□□□□ -0.33
CTSA-208ENST00000485627 ADAMTS13Q76LX8 1427 aa13□□□□□ -0.33
CTSA-208ENST00000485627 MINK1Q8N4C8 1332 aaPredicted RBP13□□□□□ -0.33
CTSA-208ENST00000485627 SRPK2P78362 688 aaKnown RBP13□□□□□ -0.33
CTSA-208ENST00000485627 TMC1Q8TDI8 760 aa13□□□□□ -0.33
CTSA-208ENST00000485627 SIRT1Q96EB6 747 aa13□□□□□ -0.33
CTSA-208ENST00000485627 KNSTRNQ9Y448 316 aa13□□□□□ -0.33
CTSA-208ENST00000485627 SLC4A2P04920 1241 aa12.99□□□□□ -0.33
CTSA-208ENST00000485627 XIRP1Q702N8 1843 aaKnown RBP12.99□□□□□ -0.33
CTSA-208ENST00000485627 KTN1Q86UP2 1357 aaKnown RBP12.98□□□□□ -0.33
CTSA-208ENST00000485627 RALBP1Q15311 655 aa12.98□□□□□ -0.33
CTSA-208ENST00000485627 WAPLQ7Z5K2 1190 aa12.98□□□□□ -0.33
CTSA-208ENST00000485627 FAM135BQ49AJ0 1406 aa12.97□□□□□ -0.33
CTSA-208ENST00000485627 CENPBP07199 599 aaPredicted RBP12.97□□□□□ -0.33
CTSA-208ENST00000485627 CABP2Q9NPB3 220 aa12.97□□□□□ -0.33
CTSA-208ENST00000485627 DIP2AQ14689 1571 aa12.97□□□□□ -0.33
CTSA-208ENST00000485627 TECPR2O15040 1411 aa12.96□□□□□ -0.33
CTSA-208ENST00000485627 ATAD2Q6PL18 1390 aa12.96□□□□□ -0.33
CTSA-208ENST00000485627 PER1O15534 1290 aaPredicted RBP12.96□□□□□ -0.33
CTSA-208ENST00000485627 AMOTL2Q9Y2J4 779 aa12.96□□□□□ -0.33
CTSA-208ENST00000485627 CDK19Q9BWU1 502 aa12.95□□□□□ -0.34
CTSA-208ENST00000485627 PLEKHH1Q9ULM0 1364 aa12.94□□□□□ -0.34
CTSA-208ENST00000485627 NINLQ9Y2I6 1382 aa12.94□□□□□ -0.34
CTSA-208ENST00000485627 TULP4Q9NRJ4 1543 aa12.94□□□□□ -0.34
CTSA-208ENST00000485627 CC2D1BQ5T0F9 858 aaKnown RBP12.94□□□□□ -0.34
CTSA-208ENST00000485627 MRS2Q9HD23 443 aa12.94□□□□□ -0.34
CTSA-208ENST00000485627 PIK3R4Q99570 1358 aa12.94□□□□□ -0.34
CTSA-208ENST00000485627 KNDC1Q76NI1 1749 aa12.93□□□□□ -0.34
CTSA-208ENST00000485627 SLC12A5Q9H2X9 1139 aa12.93□□□□□ -0.34
CTSA-208ENST00000485627 TMEM94Q12767 1356 aa12.93□□□□□ -0.34
CTSA-208ENST00000485627 MYBBP1AQ9BQG0 1328 aaKnown RBP12.92□□□□□ -0.34
CTSA-208ENST00000485627 WASLO00401 505 aaPredicted RBP12.92□□□□□ -0.34
CTSA-208ENST00000485627 ROBO2Q9HCK4 1378 aa12.92□□□□□ -0.34
CTSA-208ENST00000485627 PTPRUQ92729 1446 aa12.91□□□□□ -0.34
CTSA-208ENST00000485627 HDGFL2Q7Z4V5 671 aaPredicted RBP12.91□□□□□ -0.34
CTSA-208ENST00000485627 TERF2IPQ9NYB0 399 aa12.91□□□□□ -0.34
CTSA-208ENST00000485627 ROBO1Q9Y6N7 1651 aa12.91□□□□□ -0.34
CTSA-208ENST00000485627 MYOM1P52179 1685 aa12.9□□□□□ -0.34
CTSA-208ENST00000485627 UPF1Q92900 1129 aaKnown RBP eCLIP12.9□□□□□ -0.34
CTSA-208ENST00000485627 ANKRD36BQ8N2N9 1353 aa12.9□□□□□ -0.34
CTSA-208ENST00000485627 PTCH1Q13635 1447 aa12.89□□□□□ -0.35
CTSA-208ENST00000485627 AMER1Q5JTC6 1135 aaPredicted RBP12.89□□□□□ -0.35
CTSA-208ENST00000485627 PARD3Q8TEW0 1356 aa12.89□□□□□ -0.35
CTSA-208ENST00000485627 NPC1L1Q9UHC9 1359 aa12.89□□□□□ -0.35
CTSA-208ENST00000485627 NSD3Q9BZ95 1437 aa12.88□□□□□ -0.35
CTSA-208ENST00000485627 NLRP13Q86W25 1043 aa12.88□□□□□ -0.35
CTSA-208ENST00000485627 BRD4O60885 1362 aaPredicted RBP12.87□□□□□ -0.35
CTSA-208ENST00000485627 KCNA6P17658 529 aa12.87□□□□□ -0.35
CTSA-208ENST00000485627 PROSER2Q86WR7 435 aaPredicted RBP12.87□□□□□ -0.35
CTSA-208ENST00000485627 CARD14Q9BXL6 1004 aa12.87□□□□□ -0.35
CTSA-208ENST00000485627 CABP1Q9NZU7 370 aa12.87□□□□□ -0.35
CTSA-208ENST00000485627 CGNL1Q0VF96 1302 aa12.87□□□□□ -0.35
CTSA-208ENST00000485627 FAM9BQ8IZU0 186 aa12.86□□□□□ -0.35
CTSA-208ENST00000485627 NUDT16Q96DE0 195 aaKnown RBP12.86□□□□□ -0.35
CTSA-208ENST00000485627 LRP6O75581 1613 aa12.86□□□□□ -0.35
CTSA-208ENST00000485627 MYCNP04198 464 aaPredicted RBP12.85□□□□□ -0.35
CTSA-208ENST00000485627 CCDC184Q52MB2 194 aa12.85□□□□□ -0.35
CTSA-208ENST00000485627 CCDC61Q9Y6R9 512 aa12.85□□□□□ -0.35
CTSA-208ENST00000485627 MORC1Q86VD1 984 aa12.84□□□□□ -0.35
CTSA-208ENST00000485627 A0A1W2PP64 1363 aa12.83□□□□□ -0.36
CTSA-208ENST00000485627 PHLPP1O60346 1717 aa12.83□□□□□ -0.36
CTSA-208ENST00000485627 XRN1Q8IZH2 1706 aaKnown RBP12.83□□□□□ -0.36
CTSA-208ENST00000485627 PPIP5K1Q6PFW1 1433 aa12.83□□□□□ -0.36
CTSA-208ENST00000485627 NSD2O96028 1365 aa12.82□□□□□ -0.36
CTSA-208ENST00000485627 JCADQ9P266 1359 aa12.82□□□□□ -0.36
CTSA-208ENST00000485627 ADGRB2O60241 1585 aa12.82□□□□□ -0.36
CTSA-208ENST00000485627 PPP2R1AP30153 589 aa12.82□□□□□ -0.36
CTSA-208ENST00000485627 C14orf37Q86TY3 774 aa12.82□□□□□ -0.36
CTSA-208ENST00000485627 SLAIN2Q9P270 581 aa12.82□□□□□ -0.36
CTSA-208ENST00000485627 ATP7BP35670 1465 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms