RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 FCF1Q9Y324 198 aaKnown RBP9.12□□□□□ -0.95
VPS13A-211ENST00000484581 MINK1Q8N4C8 1332 aaPredicted RBP9.11□□□□□ -0.95
VPS13A-211ENST00000484581 Q3C1V9 767 aa9.11□□□□□ -0.95
VPS13A-211ENST00000484581 ZBTB24O43167 697 aaPredicted RBP9.09□□□□□ -0.95
VPS13A-211ENST00000484581 CD46P15529 392 aa9.09□□□□□ -0.95
VPS13A-211ENST00000484581 MDM2Q00987 491 aaPredicted RBP9.09□□□□□ -0.95
VPS13A-211ENST00000484581 LMOD2Q6P5Q4 547 aa9.09□□□□□ -0.95
VPS13A-211ENST00000484581 KDM4AO75164 1064 aa9.08□□□□□ -0.96
VPS13A-211ENST00000484581 KRI1Q8N9T8 703 aaKnown RBP9.08□□□□□ -0.96
VPS13A-211ENST00000484581 MSS51Q4VC12 460 aa9.07□□□□□ -0.96
VPS13A-211ENST00000484581 RNF19BQ6ZMZ0 732 aa9.07□□□□□ -0.96
VPS13A-211ENST00000484581 PRDM9Q9NQV7 894 aa9.07□□□□□ -0.96
VPS13A-211ENST00000484581 PKD2L1Q9P0L9 805 aa9.07□□□□□ -0.96
VPS13A-211ENST00000484581 USP46P62068 366 aa9.06□□□□□ -0.96
VPS13A-211ENST00000484581 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS13A-211ENST00000484581 CRIPAKQ8N1N5 446 aa9.06□□□□□ -0.96
VPS13A-211ENST00000484581 DACH1Q9UI36 760 aa9.05□□□□□ -0.96
VPS13A-211ENST00000484581 WFS1O76024 890 aa9.04□□□□□ -0.96
VPS13A-211ENST00000484581 CLCN1P35523 988 aa9.04□□□□□ -0.96
VPS13A-211ENST00000484581 CYP4X1Q8N118 509 aa9.04□□□□□ -0.96
VPS13A-211ENST00000484581 CCDC102AQ96A19 550 aa9.04□□□□□ -0.96
VPS13A-211ENST00000484581 USB1Q9BQ65 265 aaKnown RBP9.04□□□□□ -0.96
VPS13A-211ENST00000484581 GPCPD1Q9NPB8 672 aa9.03□□□□□ -0.96
VPS13A-211ENST00000484581 AVPP01185 164 aa9.02□□□□□ -0.97
VPS13A-211ENST00000484581 MMP16P51512 607 aa9.01□□□□□ -0.97
VPS13A-211ENST00000484581 NUTM1Q86Y26 1132 aa9.01□□□□□ -0.97
VPS13A-211ENST00000484581 GMPR2Q9P2T1 348 aaKnown RBP9.01□□□□□ -0.97
VPS13A-211ENST00000484581 TTC24A2A3L6 582 aaPredicted RBP9□□□□□ -0.97
VPS13A-211ENST00000484581 STK17AQ9UEE5 414 aa9□□□□□ -0.97
VPS13A-211ENST00000484581 C11orf95C9JLR9 678 aaPredicted RBP8.99□□□□□ -0.97
VPS13A-211ENST00000484581 HOXA2O43364 376 aa8.99□□□□□ -0.97
VPS13A-211ENST00000484581 NFX1Q12986 1120 aaKnown RBP8.99□□□□□ -0.97
VPS13A-211ENST00000484581 CCDC24Q8N4L8 307 aa8.99□□□□□ -0.97
VPS13A-211ENST00000484581 TOR4AQ9NXH8 423 aa8.99□□□□□ -0.97
VPS13A-211ENST00000484581 AXIN1O15169 862 aa8.98□□□□□ -0.97
VPS13A-211ENST00000484581 HLA-CQ95604 372 aa8.98□□□□□ -0.97
VPS13A-211ENST00000484581 FAM217BQ9NTX9 383 aaPredicted RBP8.98□□□□□ -0.97
VPS13A-211ENST00000484581 WIPF1O43516 503 aa8.97□□□□□ -0.97
VPS13A-211ENST00000484581 DXOO77932 396 aaKnown RBP8.97□□□□□ -0.97
VPS13A-211ENST00000484581 TRIM32Q13049 653 aa8.97□□□□□ -0.97
VPS13A-211ENST00000484581 CTC1Q2NKJ3 1217 aa8.97□□□□□ -0.97
VPS13A-211ENST00000484581 WNT7AO00755 349 aa8.95□□□□□ -0.98
VPS13A-211ENST00000484581 SMCPP49901 116 aaPredicted RBP8.95□□□□□ -0.98
VPS13A-211ENST00000484581 GUCA2AQ02747 115 aa8.95□□□□□ -0.98
VPS13A-211ENST00000484581 SNIP1Q8TAD8 396 aaKnown RBP8.95□□□□□ -0.98
VPS13A-211ENST00000484581 BRPF1P55201 1214 aaPredicted RBP8.94□□□□□ -0.98
VPS13A-211ENST00000484581 INSM1Q01101 510 aaPredicted RBP8.94□□□□□ -0.98
VPS13A-211ENST00000484581 ARXQ96QS3 562 aa8.94□□□□□ -0.98
VPS13A-211ENST00000484581 SSTR3P32745 418 aaPredicted RBP8.93□□□□□ -0.98
VPS13A-211ENST00000484581 ZC3H15Q8WU90 426 aaKnown RBP8.93□□□□□ -0.98
VPS13A-211ENST00000484581 SYMPKQ92797 1274 aaKnown RBP8.93□□□□□ -0.98
VPS13A-211ENST00000484581 JUNDP17535 347 aa8.92□□□□□ -0.98
VPS13A-211ENST00000484581 MRGPRX2Q96LB1 330 aa8.92□□□□□ -0.98
VPS13A-211ENST00000484581 REPIN1Q9BWE0 567 aaKnown RBP8.92□□□□□ -0.98
VPS13A-211ENST00000484581 C6orf229H3BNL8 230 aa8.91□□□□□ -0.98
VPS13A-211ENST00000484581 FDX1P10109 184 aa8.91□□□□□ -0.98
VPS13A-211ENST00000484581 TTLL12Q14166 644 aaPredicted RBP8.91□□□□□ -0.98
VPS13A-211ENST00000484581 LCE2CQ5TA81 110 aa8.91□□□□□ -0.98
VPS13A-211ENST00000484581 BARGINQ6ZT62 677 aa8.91□□□□□ -0.98
VPS13A-211ENST00000484581 C14orf37Q86TY3 774 aa8.91□□□□□ -0.98
VPS13A-211ENST00000484581 RETREG3Q86VR2 466 aa8.91□□□□□ -0.98
VPS13A-211ENST00000484581 RC3H1Q5TC82 1133 aaKnown RBP8.9□□□□□ -0.98
VPS13A-211ENST00000484581 ZMYND10O75800 440 aa8.89□□□□□ -0.99
VPS13A-211ENST00000484581 SMPD1P17405 629 aa8.89□□□□□ -0.99
VPS13A-211ENST00000484581 WNT7BP56706 349 aa8.89□□□□□ -0.99
VPS13A-211ENST00000484581 NUDT12Q9BQG2 462 aa8.88□□□□□ -0.99
VPS13A-211ENST00000484581 J3QL48 77 aa8.87□□□□□ -0.99
VPS13A-211ENST00000484581 SNRPBP14678 240 aaKnown RBP8.87□□□□□ -0.99
VPS13A-211ENST00000484581 SPIRE2Q8WWL2 714 aa8.87□□□□□ -0.99
VPS13A-211ENST00000484581 PCDHGC3Q9UN70 934 aa8.87□□□□□ -0.99
VPS13A-211ENST00000484581 TERTO14746 1132 aaKnown RBP8.86□□□□□ -0.99
VPS13A-211ENST00000484581 MS4A1P11836 297 aa8.86□□□□□ -0.99
VPS13A-211ENST00000484581 SKOR1P84550 965 aa8.86□□□□□ -0.99
VPS13A-211ENST00000484581 ATP13A2Q9NQ11 1180 aa8.86□□□□□ -0.99
VPS13A-211ENST00000484581 NDUFV2P19404 249 aa8.85□□□□□ -0.99
VPS13A-211ENST00000484581 NEUROD2Q15784 382 aa8.85□□□□□ -0.99
VPS13A-211ENST00000484581 AMHR2Q16671 573 aa8.85□□□□□ -0.99
VPS13A-211ENST00000484581 PTCRAQ6ISU1 281 aaPredicted RBP8.84□□□□□ -0.99
VPS13A-211ENST00000484581 SLC24A3Q9HC58 644 aa8.84□□□□□ -0.99
VPS13A-211ENST00000484581 MOXD2PA6NHM9 499 aa8.83□□□□□ -1
VPS13A-211ENST00000484581 GIGYF2Q6Y7W6 1299 aaKnown RBP8.83□□□□□ -1
VPS13A-211ENST00000484581 TRIM47Q96LD4 638 aa8.83□□□□□ -1
VPS13A-211ENST00000484581 BEGAINQ9BUH8 593 aa8.83□□□□□ -1
VPS13A-211ENST00000484581 ALDH1A1P00352 501 aa8.82□□□□□ -1
VPS13A-211ENST00000484581 CCNYL3P0C7X3 344 aa8.82□□□□□ -1
VPS13A-211ENST00000484581 EHBP1Q8NDI1 1231 aa8.82□□□□□ -1
VPS13A-211ENST00000484581 HPS1Q92902 700 aa8.82□□□□□ -1
VPS13A-211ENST00000484581 SENP2Q9HC62 589 aa8.82□□□□□ -1
VPS13A-211ENST00000484581 SPDYE5A6NIY4 337 aa8.81□□□□□ -1
VPS13A-211ENST00000484581 DIXDC1Q155Q3 683 aa8.81□□□□□ -1
VPS13A-211ENST00000484581 MTMR2Q13614 643 aa8.8□□□□□ -1
VPS13A-211ENST00000484581 PTPRNQ16849 979 aa8.8□□□□□ -1
VPS13A-211ENST00000484581 PRR7Q8TB68 274 aa8.8□□□□□ -1
VPS13A-211ENST00000484581 TBC1D2Q9BYX2 928 aa8.8□□□□□ -1
VPS13A-211ENST00000484581 EVA1BQ9NVM1 165 aa8.8□□□□□ -1
VPS13A-211ENST00000484581 WASF2Q9Y6W5 498 aa8.79□□□□□ -1
VPS13A-211ENST00000484581 SH3BP2P78314 561 aa8.78□□□□□ -1
VPS13A-211ENST00000484581 AK7Q96M32 723 aa8.78□□□□□ -1
VPS13A-211ENST00000484581 UNC93B1Q9H1C4 597 aa8.78□□□□□ -1
VPS13A-211ENST00000484581 TRIM66O15016 1216 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms