RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 IFT172Q9UG01 1749 aa19.62■□□□□ 0.73
SMAD9-204ENST00000483941 DCCP43146 1447 aa19.61■□□□□ 0.73
SMAD9-204ENST00000483941 C14orf93Q9H972 538 aaKnown RBP19.61■□□□□ 0.73
SMAD9-204ENST00000483941 XRN1Q8IZH2 1706 aaKnown RBP19.61■□□□□ 0.73
SMAD9-204ENST00000483941 PIK3C2GO75747 1445 aa19.6■□□□□ 0.73
SMAD9-204ENST00000483941 NUTM2BA6NNL0 878 aaPredicted RBP19.6■□□□□ 0.73
SMAD9-204ENST00000483941 NUTM2EB1AL46 878 aaPredicted RBP19.6■□□□□ 0.73
SMAD9-204ENST00000483941 SLC24A1O60721 1099 aa19.6■□□□□ 0.73
SMAD9-204ENST00000483941 BRINP3Q76B58 766 aa19.6■□□□□ 0.73
SMAD9-204ENST00000483941 NUTM2AQ8IVF1 878 aaPredicted RBP19.6■□□□□ 0.73
SMAD9-204ENST00000483941 KIAA1210Q9ULL0 1709 aa19.59■□□□□ 0.73
SMAD9-204ENST00000483941 AFF2P51816 1311 aa19.59■□□□□ 0.73
SMAD9-204ENST00000483941 RGS12O14924 1447 aa19.59■□□□□ 0.73
SMAD9-204ENST00000483941 TRPM1Q7Z4N2 1603 aa19.58■□□□□ 0.73
SMAD9-204ENST00000483941 USP47Q96K76 1375 aa19.57■□□□□ 0.72
SMAD9-204ENST00000483941 HSPA5P11021 654 aaKnown RBP19.57■□□□□ 0.72
SMAD9-204ENST00000483941 NUTM2DQ5VT03 806 aaPredicted RBP19.57■□□□□ 0.72
SMAD9-204ENST00000483941 PTPRUQ92729 1446 aa19.57■□□□□ 0.72
SMAD9-204ENST00000483941 EIF3AQ14152 1382 aaKnown RBP19.57■□□□□ 0.72
SMAD9-204ENST00000483941 LAMC1P11047 1609 aa19.56■□□□□ 0.72
SMAD9-204ENST00000483941 NRXN3Q9Y4C0 1643 aa19.56■□□□□ 0.72
SMAD9-204ENST00000483941 NBPF1Q3BBV0 1214 aa19.56■□□□□ 0.72
SMAD9-204ENST00000483941 CFAP70Q5T0N1 1121 aa19.56■□□□□ 0.72
SMAD9-204ENST00000483941 MST1RQ04912 1400 aa19.54■□□□□ 0.72
SMAD9-204ENST00000483941 SETBP1Q9Y6X0 1596 aa19.53■□□□□ 0.72
SMAD9-204ENST00000483941 AMOTL2Q9Y2J4 779 aa19.53■□□□□ 0.72
SMAD9-204ENST00000483941 EP400Q96L91 3159 aa19.52■□□□□ 0.72
SMAD9-204ENST00000483941 NALCNQ8IZF0 1738 aa19.52■□□□□ 0.72
SMAD9-204ENST00000483941 PNPLA6Q8IY17 1366 aa19.49■□□□□ 0.71
SMAD9-204ENST00000483941 RBM6P78332 1123 aaKnown RBP19.49■□□□□ 0.71
SMAD9-204ENST00000483941 C8orf37Q96NL8 207 aa19.49■□□□□ 0.71
SMAD9-204ENST00000483941 LRRC59Q96AG4 307 aaKnown RBP19.48■□□□□ 0.71
SMAD9-204ENST00000483941 ST20-MTHFSA0A0A6YYL1 179 aa19.47■□□□□ 0.71
SMAD9-204ENST00000483941 ADGRL3Q9HAR2 1447 aa19.47■□□□□ 0.71
SMAD9-204ENST00000483941 QTRT2Q9H974 415 aaKnown RBP19.46■□□□□ 0.71
SMAD9-204ENST00000483941 CDCA8Q53HL2 280 aa19.45■□□□□ 0.7
SMAD9-204ENST00000483941 ATAD2Q6PL18 1390 aa19.44■□□□□ 0.7
SMAD9-204ENST00000483941 HIRIP3Q9BW71 556 aaPredicted RBP19.43■□□□□ 0.7
SMAD9-204ENST00000483941 ADGRB1O14514 1584 aa19.42■□□□□ 0.7
SMAD9-204ENST00000483941 TMF1P82094 1093 aa19.42■□□□□ 0.7
SMAD9-204ENST00000483941 TMEM132EQ6IEE7 984 aa19.42■□□□□ 0.7
SMAD9-204ENST00000483941 DDX17Q92841 729 aaKnown RBP19.42■□□□□ 0.7
SMAD9-204ENST00000483941 METP08581 1390 aa19.41■□□□□ 0.7
SMAD9-204ENST00000483941 SIRT1Q96EB6 747 aa19.4■□□□□ 0.7
SMAD9-204ENST00000483941 NGLY1Q96IV0 654 aa19.4■□□□□ 0.7
SMAD9-204ENST00000483941 TRAK1Q9UPV9 953 aa19.4■□□□□ 0.7
SMAD9-204ENST00000483941 CENPJQ9HC77 1338 aaPredicted RBP19.4■□□□□ 0.7
SMAD9-204ENST00000483941 LRPPRCP42704 1394 aaKnown RBP19.4■□□□□ 0.7
SMAD9-204ENST00000483941 ADAMTS2O95450 1211 aa19.39■□□□□ 0.69
SMAD9-204ENST00000483941 YTHDC2Q9H6S0 1430 aaKnown RBP19.39■□□□□ 0.69
SMAD9-204ENST00000483941 C1orf167Q5SNV9 1468 aa19.38■□□□□ 0.69
SMAD9-204ENST00000483941 COL22A1Q8NFW1 1626 aaPredicted RBP19.38■□□□□ 0.69
SMAD9-204ENST00000483941 ABCC11Q96J66 1382 aa19.38■□□□□ 0.69
SMAD9-204ENST00000483941 SBNO2Q9Y2G9 1366 aa19.38■□□□□ 0.69
SMAD9-204ENST00000483941 DIEXFQ68CQ4 756 aaKnown RBP19.37■□□□□ 0.69
SMAD9-204ENST00000483941 TESK2Q96S53 571 aa19.36■□□□□ 0.69
SMAD9-204ENST00000483941 POGKQ9P215 609 aa19.36■□□□□ 0.69
SMAD9-204ENST00000483941 MARF1Q9Y4F3 1742 aaKnown RBP19.36■□□□□ 0.69
SMAD9-204ENST00000483941 PTCH1Q13635 1447 aa19.35■□□□□ 0.69
SMAD9-204ENST00000483941 CCDC7Q96M83 1385 aa19.35■□□□□ 0.69
SMAD9-204ENST00000483941 STK26Q9P289 416 aa19.35■□□□□ 0.69
SMAD9-204ENST00000483941 USP21Q9UK80 565 aa19.34■□□□□ 0.69
SMAD9-204ENST00000483941 DLC1Q96QB1 1528 aa19.34■□□□□ 0.69
SMAD9-204ENST00000483941 ATRNO75882 1429 aa19.34■□□□□ 0.69
SMAD9-204ENST00000483941 WASHC2AQ641Q2 1341 aa19.33■□□□□ 0.69
SMAD9-204ENST00000483941 ZRANB1Q9UGI0 708 aa19.33■□□□□ 0.68
SMAD9-204ENST00000483941 TRPC5Q9UL62 973 aaPredicted RBP19.33■□□□□ 0.68
SMAD9-204ENST00000483941 KIF7Q2M1P5 1343 aa19.32■□□□□ 0.68
SMAD9-204ENST00000483941 PUS7Q96PZ0 661 aaKnown RBP19.32■□□□□ 0.68
SMAD9-204ENST00000483941 TECPR2O15040 1411 aa19.32■□□□□ 0.68
SMAD9-204ENST00000483941 SOS2Q07890 1332 aaPredicted RBP19.31■□□□□ 0.68
SMAD9-204ENST00000483941 DDX10Q13206 875 aaKnown RBP19.3■□□□□ 0.68
SMAD9-204ENST00000483941 EVC2Q86UK5 1308 aa19.29■□□□□ 0.68
SMAD9-204ENST00000483941 PRAM1Q96QH2 718 aa19.29■□□□□ 0.68
SMAD9-204ENST00000483941 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.28■□□□□ 0.68
SMAD9-204ENST00000483941 C11orf95C9JLR9 678 aaPredicted RBP19.28■□□□□ 0.68
SMAD9-204ENST00000483941 FNBP4Q8N3X1 1017 aaPredicted RBP19.28■□□□□ 0.68
SMAD9-204ENST00000483941 POLR3GLQ9BT43 218 aa19.27■□□□□ 0.68
SMAD9-204ENST00000483941 ORAI2Q96SN7 254 aa19.26■□□□□ 0.67
SMAD9-204ENST00000483941 ROBO2Q9HCK4 1378 aa19.25■□□□□ 0.67
SMAD9-204ENST00000483941 CDC42BPGQ6DT37 1551 aa19.24■□□□□ 0.67
SMAD9-204ENST00000483941 KNDC1Q76NI1 1749 aa19.24■□□□□ 0.67
SMAD9-204ENST00000483941 ARHGEF28Q8N1W1 1705 aaKnown RBP19.24■□□□□ 0.67
SMAD9-204ENST00000483941 BCL9LQ86UU0 1499 aa19.23■□□□□ 0.67
SMAD9-204ENST00000483941 CCDC125Q86Z20 511 aa19.23■□□□□ 0.67
SMAD9-204ENST00000483941 PXDNQ92626 1479 aa19.22■□□□□ 0.67
SMAD9-204ENST00000483941 QRICH2Q9H0J4 1663 aa19.21■□□□□ 0.67
SMAD9-204ENST00000483941 SAFB2Q14151 953 aaKnown RBP eCLIP19.2■□□□□ 0.66
SMAD9-204ENST00000483941 WAPLQ7Z5K2 1190 aa19.2■□□□□ 0.66
SMAD9-204ENST00000483941 BRWD3Q6RI45 1802 aa19.2■□□□□ 0.66
SMAD9-204ENST00000483941 NPHP3Q7Z494 1330 aa19.2■□□□□ 0.66
SMAD9-204ENST00000483941 GLI3P10071 1580 aa19.19■□□□□ 0.66
SMAD9-204ENST00000483941 MINK1Q8N4C8 1332 aaPredicted RBP19.19■□□□□ 0.66
SMAD9-204ENST00000483941 NINLQ9Y2I6 1382 aa19.19■□□□□ 0.66
SMAD9-204ENST00000483941 LRP5O75197 1615 aa19.18■□□□□ 0.66
SMAD9-204ENST00000483941 SRPK2P78362 688 aaKnown RBP19.18■□□□□ 0.66
SMAD9-204ENST00000483941 BLMP54132 1417 aaPredicted RBP19.17■□□□□ 0.66
SMAD9-204ENST00000483941 ANP32CO43423 234 aa19.17■□□□□ 0.66
SMAD9-204ENST00000483941 GJD4Q96KN9 370 aaPredicted RBP19.16■□□□□ 0.66
SMAD9-204ENST00000483941 USP32Q8NFA0 1604 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms