RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 FBXO41Q8TF61 875 aa28.16■■■□□ 2.1
LIME1-205ENST00000480139 UBAP1LF5GYI3 381 aa28.15■■■□□ 2.1
LIME1-205ENST00000480139 PRAM1Q96QH2 718 aa28.15■■■□□ 2.1
LIME1-205ENST00000480139 ADGRB2O60241 1585 aa28.14■■■□□ 2.1
LIME1-205ENST00000480139 CADPS2Q86UW7 1296 aa28.13■■■□□ 2.09
LIME1-205ENST00000480139 ATF3P18847 181 aa28.11■■■□□ 2.09
LIME1-205ENST00000480139 POGKQ9P215 609 aa28.11■■■□□ 2.09
LIME1-205ENST00000480139 CARD11Q9BXL7 1154 aa28.08■■■□□ 2.09
LIME1-205ENST00000480139 EIF3AQ14152 1382 aaKnown RBP28.08■■■□□ 2.09
LIME1-205ENST00000480139 MST1RQ04912 1400 aa28.06■■■□□ 2.08
LIME1-205ENST00000480139 QRICH2Q9H0J4 1663 aa28.06■■■□□ 2.08
LIME1-205ENST00000480139 FMN2Q9NZ56 1722 aa28.06■■■□□ 2.08
LIME1-205ENST00000480139 SLAIN2Q9P270 581 aa28.04■■■□□ 2.08
LIME1-205ENST00000480139 CENPJQ9HC77 1338 aaPredicted RBP28.03■■■□□ 2.08
LIME1-205ENST00000480139 SAFB2Q14151 953 aaKnown RBP eCLIP28.03■■■□□ 2.08
LIME1-205ENST00000480139 ROBO1Q9Y6N7 1651 aa28.02■■■□□ 2.08
LIME1-205ENST00000480139 C1orf167Q5SNV9 1468 aa27.98■■■□□ 2.07
LIME1-205ENST00000480139 PIP4K2BP78356 416 aa27.98■■■□□ 2.07
LIME1-205ENST00000480139 MINK1Q8N4C8 1332 aaPredicted RBP27.97■■■□□ 2.07
LIME1-205ENST00000480139 SBNO2Q9Y2G9 1366 aa27.97■■■□□ 2.07
LIME1-205ENST00000480139 ANKARQ7Z5J8 1434 aa27.95■■■□□ 2.07
LIME1-205ENST00000480139 SCAF1Q9H7N4 1312 aaKnown RBP27.94■■■□□ 2.06
LIME1-205ENST00000480139 TULP4Q9NRJ4 1543 aa27.94■■■□□ 2.06
LIME1-205ENST00000480139 USP32Q8NFA0 1604 aa27.93■■■□□ 2.06
LIME1-205ENST00000480139 WASLO00401 505 aaPredicted RBP27.93■■■□□ 2.06
LIME1-205ENST00000480139 HIRIP3Q9BW71 556 aaPredicted RBP27.93■■■□□ 2.06
LIME1-205ENST00000480139 USP47Q96K76 1375 aa27.92■■■□□ 2.06
LIME1-205ENST00000480139 BRINP3Q76B58 766 aa27.9■■■□□ 2.06
LIME1-205ENST00000480139 ILDR1Q86SU0 546 aaPredicted RBP27.9■■■□□ 2.06
LIME1-205ENST00000480139 RGPD8O14715 1765 aaPredicted RBP27.9■■■□□ 2.06
LIME1-205ENST00000480139 AHDC1Q5TGY3 1603 aaPredicted RBP27.89■■■□□ 2.06
LIME1-205ENST00000480139 KIF1AQ12756 1690 aa27.89■■■□□ 2.06
LIME1-205ENST00000480139 NHSL1Q5SYE7 1610 aa27.89■■■□□ 2.05
LIME1-205ENST00000480139 ITSN1Q15811 1721 aa27.88■■■□□ 2.05
LIME1-205ENST00000480139 ATP7BP35670 1465 aa27.86■■■□□ 2.05
LIME1-205ENST00000480139 CDK19Q9BWU1 502 aa27.85■■■□□ 2.05
LIME1-205ENST00000480139 TOPAZ1Q8N9V7 1692 aa27.84■■■□□ 2.05
LIME1-205ENST00000480139 EVC2Q86UK5 1308 aa27.84■■■□□ 2.05
LIME1-205ENST00000480139 PHLPP1O60346 1717 aa27.84■■■□□ 2.05
LIME1-205ENST00000480139 ST20-MTHFSA0A0A6YYL1 179 aa27.83■■■□□ 2.05
LIME1-205ENST00000480139 NUTM2FA1L443 756 aa27.83■■■□□ 2.05
LIME1-205ENST00000480139 SLC24A1O60721 1099 aa27.83■■■□□ 2.05
LIME1-205ENST00000480139 ORAI2Q96SN7 254 aa27.83■■■□□ 2.05
LIME1-205ENST00000480139 ESCO1Q5FWF5 840 aa27.82■■■□□ 2.04
LIME1-205ENST00000480139 PRR36Q9H6K5 1346 aa27.82■■■□□ 2.04
LIME1-205ENST00000480139 TESK2Q96S53 571 aa27.81■■■□□ 2.04
LIME1-205ENST00000480139 COL16A1Q07092 1604 aaPredicted RBP27.8■■■□□ 2.04
LIME1-205ENST00000480139 HSPA1LP34931 641 aa27.79■■■□□ 2.04
LIME1-205ENST00000480139 NUDT16Q96DE0 195 aaKnown RBP27.78■■■□□ 2.04
LIME1-205ENST00000480139 SRPK2P78362 688 aaKnown RBP27.77■■■□□ 2.04
LIME1-205ENST00000480139 EIF4G2P78344 907 aaKnown RBP eCLIP27.76■■■□□ 2.03
LIME1-205ENST00000480139 PHF8Q9UPP1 1060 aa27.76■■■□□ 2.03
LIME1-205ENST00000480139 NPHP3Q7Z494 1330 aa27.74■■■□□ 2.03
LIME1-205ENST00000480139 CABP2Q9NPB3 220 aa27.74■■■□□ 2.03
LIME1-205ENST00000480139 CCDC61Q9Y6R9 512 aa27.74■■■□□ 2.03
LIME1-205ENST00000480139 PUS7Q96PZ0 661 aaKnown RBP27.73■■■□□ 2.03
LIME1-205ENST00000480139 ATAD2Q6PL18 1390 aa27.73■■■□□ 2.03
LIME1-205ENST00000480139 PXDNQ92626 1479 aa27.72■■■□□ 2.03
LIME1-205ENST00000480139 SOS2Q07890 1332 aaPredicted RBP27.71■■■□□ 2.03
LIME1-205ENST00000480139 PPIP5K1Q6PFW1 1433 aa27.69■■■□□ 2.02
LIME1-205ENST00000480139 FOXO3O43524 673 aa27.69■■■□□ 2.02
LIME1-205ENST00000480139 HSPA5P11021 654 aaKnown RBP27.69■■■□□ 2.02
LIME1-205ENST00000480139 PLEKHG3A1L390 1219 aa27.68■■■□□ 2.02
LIME1-205ENST00000480139 TMF1P82094 1093 aa27.68■■■□□ 2.02
LIME1-205ENST00000480139 DDX17Q92841 729 aaKnown RBP27.68■■■□□ 2.02
LIME1-205ENST00000480139 POLR3AO14802 1390 aaPredicted RBP27.68■■■□□ 2.02
LIME1-205ENST00000480139 DISP3Q9P2K9 1392 aa27.67■■■□□ 2.02
LIME1-205ENST00000480139 SHPRHQ149N8 1683 aa27.66■■■□□ 2.02
LIME1-205ENST00000480139 ZEB1P37275 1124 aaPredicted RBP27.66■■■□□ 2.02
LIME1-205ENST00000480139 PMFBP1Q8TBY8 1022 aa27.66■■■□□ 2.02
LIME1-205ENST00000480139 TRPM3Q9HCF6 1732 aaPredicted RBP27.64■■■□□ 2.01
LIME1-205ENST00000480139 CDCA8Q53HL2 280 aa27.63■■■□□ 2.01
LIME1-205ENST00000480139 LRRC59Q96AG4 307 aaKnown RBP27.63■■■□□ 2.01
LIME1-205ENST00000480139 JCADQ9P266 1359 aa27.62■■■□□ 2.01
LIME1-205ENST00000480139 NGDNQ8NEJ9 315 aaKnown RBP27.62■■■□□ 2.01
LIME1-205ENST00000480139 NINLQ9Y2I6 1382 aa27.61■■■□□ 2.01
LIME1-205ENST00000480139 AKAP12Q02952 1782 aa27.61■■■□□ 2.01
LIME1-205ENST00000480139 ACEP12821 1306 aa27.61■■■□□ 2.01
LIME1-205ENST00000480139 SBNO1A3KN83 1393 aa27.6■■■□□ 2.01
LIME1-205ENST00000480139 PSME1Q06323 249 aa27.6■■■□□ 2.01
LIME1-205ENST00000480139 KRT28Q7Z3Y7 464 aa27.6■■■□□ 2.01
LIME1-205ENST00000480139 CABP1Q9NZU7 370 aa27.6■■■□□ 2.01
LIME1-205ENST00000480139 COL22A1Q8NFW1 1626 aaPredicted RBP27.58■■■□□ 2.01
LIME1-205ENST00000480139 XPCQ01831 940 aaPredicted RBP27.57■■■□□ 2
LIME1-205ENST00000480139 BRD4O60885 1362 aaPredicted RBP27.57■■■□□ 2
LIME1-205ENST00000480139 TNS3Q68CZ2 1445 aa27.57■■■□□ 2
LIME1-205ENST00000480139 ALS2Q96Q42 1657 aa27.56■■■□□ 2
LIME1-205ENST00000480139 PNPLA6Q8IY17 1366 aa27.56■■■□□ 2
LIME1-205ENST00000480139 CPSF1Q10570 1443 aaKnown RBP27.56■■■□□ 2
LIME1-205ENST00000480139 MON2Q7Z3U7 1717 aa27.55■■■□□ 2
LIME1-205ENST00000480139 SPATA31A3Q5VYP0 1347 aa27.55■■■□□ 2
LIME1-205ENST00000480139 MYOM1P52179 1685 aa27.55■■■□□ 2
LIME1-205ENST00000480139 CD163L1Q9NR16 1453 aa27.54■■■□□ 2
LIME1-205ENST00000480139 USP6P35125 1406 aa27.53■■■□□ 2
LIME1-205ENST00000480139 ZNF692Q9BU19 519 aaPredicted RBP27.53■■■□□ 2
LIME1-205ENST00000480139 NRKQ7Z2Y5 1582 aa27.52■■■□□ 2
LIME1-205ENST00000480139 SPATA31A6Q5VVP1 1343 aa27.52■■■□□ 2
LIME1-205ENST00000480139 ARHGEF10O15013 1369 aa27.51■■□□□ 1.99
LIME1-205ENST00000480139 SSH2Q76I76 1423 aa27.5■■□□□ 1.99
LIME1-205ENST00000480139 TMC1Q8TDI8 760 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms