RNA–Protein interactions for RNA: ENST00000479511.1

GAPVD1-217, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 3

Gene GAPVD1, Length 575 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-217ENST00000479511 PALM3A6NDB9 673 aaPredicted RBP12.37□□□□□ -0.43
GAPVD1-217ENST00000479511 TRIM6-TRIM34B2RNG4 842 aa12.37□□□□□ -0.43
GAPVD1-217ENST00000479511 PPP1R3GB7ZBB8 358 aa12.37□□□□□ -0.43
GAPVD1-217ENST00000479511 PATL2C9JE40 543 aaKnown RBP12.37□□□□□ -0.43
GAPVD1-217ENST00000479511 GCGRP47871 477 aa12.37□□□□□ -0.43
GAPVD1-217ENST00000479511 GPR153Q6NV75 609 aa12.37□□□□□ -0.43
GAPVD1-217ENST00000479511 LRRN4Q8WUT4 740 aa12.37□□□□□ -0.43
GAPVD1-217ENST00000479511 SNPHO15079 494 aa12.35□□□□□ -0.43
GAPVD1-217ENST00000479511 USP46P62068 366 aa12.35□□□□□ -0.43
GAPVD1-217ENST00000479511 EPS8L1Q8TE68 723 aa12.35□□□□□ -0.43
GAPVD1-217ENST00000479511 UCN2Q96RP3 112 aa12.35□□□□□ -0.43
GAPVD1-217ENST00000479511 PPP4R3BQ5MIZ7 849 aa12.34□□□□□ -0.43
GAPVD1-217ENST00000479511 ST18O60284 1047 aa12.33□□□□□ -0.44
GAPVD1-217ENST00000479511 LMOD1P29536 600 aaPredicted RBP12.33□□□□□ -0.44
GAPVD1-217ENST00000479511 DOK7Q18PE1 504 aa12.33□□□□□ -0.44
GAPVD1-217ENST00000479511 PACS2Q86VP3 889 aa12.33□□□□□ -0.44
GAPVD1-217ENST00000479511 CDCA8Q53HL2 280 aa12.32□□□□□ -0.44
GAPVD1-217ENST00000479511 PCDH10Q9P2E7 1040 aa12.32□□□□□ -0.44
GAPVD1-217ENST00000479511 TFIP11Q9UBB9 837 aaKnown RBP12.32□□□□□ -0.44
GAPVD1-217ENST00000479511 SLC10A3P09131 477 aa12.31□□□□□ -0.44
GAPVD1-217ENST00000479511 PTPREP23469 700 aa12.31□□□□□ -0.44
GAPVD1-217ENST00000479511 PRR7Q8TB68 274 aa12.31□□□□□ -0.44
GAPVD1-217ENST00000479511 CFAP99D6REC4 459 aa12.3□□□□□ -0.44
GAPVD1-217ENST00000479511 PROX2Q3B8N5 592 aa12.3□□□□□ -0.44
GAPVD1-217ENST00000479511 IVNS1ABPQ9Y6Y0 642 aa12.3□□□□□ -0.44
GAPVD1-217ENST00000479511 TMEM88BA6NKF7 163 aa12.29□□□□□ -0.44
GAPVD1-217ENST00000479511 MTMR2Q13614 643 aa12.29□□□□□ -0.44
GAPVD1-217ENST00000479511 TSC1Q92574 1164 aa12.29□□□□□ -0.44
GAPVD1-217ENST00000479511 ZSWIM6Q9HCJ5 1215 aa12.29□□□□□ -0.44
GAPVD1-217ENST00000479511 HELBQ8NG08 1087 aaPredicted RBP12.28□□□□□ -0.44
GAPVD1-217ENST00000479511 VRTNQ9H8Y1 702 aa12.27□□□□□ -0.45
GAPVD1-217ENST00000479511 ATG7O95352 703 aa12.26□□□□□ -0.45
GAPVD1-217ENST00000479511 MAFBQ9Y5Q3 323 aaPredicted RBP12.25□□□□□ -0.45
GAPVD1-217ENST00000479511 RIMBP2O15034 1052 aa12.24□□□□□ -0.45
GAPVD1-217ENST00000479511 NR6A1Q15406 480 aa12.23□□□□□ -0.45
GAPVD1-217ENST00000479511 SWT1Q5T5J6 900 aaKnown RBP12.23□□□□□ -0.45
GAPVD1-217ENST00000479511 RSPH4AQ5TD94 716 aa12.23□□□□□ -0.45
GAPVD1-217ENST00000479511 TBC1D9Q6ZT07 1266 aa12.23□□□□□ -0.45
GAPVD1-217ENST00000479511 PSDA5PKW4 1024 aaPredicted RBP12.22□□□□□ -0.45
GAPVD1-217ENST00000479511 SOX11P35716 441 aa12.22□□□□□ -0.45
GAPVD1-217ENST00000479511 CCDC27Q2M243 656 aa12.22□□□□□ -0.45
GAPVD1-217ENST00000479511 SND1Q7KZF4 910 aaKnown RBP eCLIP12.22□□□□□ -0.45
GAPVD1-217ENST00000479511 C6orf229H3BNL8 230 aa12.21□□□□□ -0.45
GAPVD1-217ENST00000479511 SYMPKQ92797 1274 aaKnown RBP12.21□□□□□ -0.45
GAPVD1-217ENST00000479511 KIAA1468Q9P260 1216 aa12.21□□□□□ -0.45
GAPVD1-217ENST00000479511 E9PSI1 815 aa12.2□□□□□ -0.46
GAPVD1-217ENST00000479511 CDAN1Q8IWY9 1227 aa12.2□□□□□ -0.46
GAPVD1-217ENST00000479511 LOC105371045A0A1W2PR82 267 aa12.19□□□□□ -0.46
GAPVD1-217ENST00000479511 PER1O15534 1290 aaPredicted RBP12.19□□□□□ -0.46
GAPVD1-217ENST00000479511 IGSF3O75054 1194 aa12.19□□□□□ -0.46
GAPVD1-217ENST00000479511 SEMA3FQ13275 785 aa12.19□□□□□ -0.46
GAPVD1-217ENST00000479511 SLF2Q8IX21 1173 aa12.19□□□□□ -0.46
GAPVD1-217ENST00000479511 FUT2Q10981 343 aa12.18□□□□□ -0.46
GAPVD1-217ENST00000479511 KCNK17Q96T54 332 aa12.18□□□□□ -0.46
GAPVD1-217ENST00000479511 MARVELD3Q96A59 401 aa12.17□□□□□ -0.46
GAPVD1-217ENST00000479511 ATP9BO43861 1147 aa12.16□□□□□ -0.46
GAPVD1-217ENST00000479511 KANK4Q5T7N3 995 aaPredicted RBP12.15□□□□□ -0.46
GAPVD1-217ENST00000479511 ZBED2Q9BTP6 218 aa12.15□□□□□ -0.46
GAPVD1-217ENST00000479511 AMOTL2Q9Y2J4 779 aa12.15□□□□□ -0.46
GAPVD1-217ENST00000479511 GNEQ9Y223 722 aaKnown RBP12.14□□□□□ -0.47
GAPVD1-217ENST00000479511 PIK3CDO00329 1044 aa12.12□□□□□ -0.47
GAPVD1-217ENST00000479511 SEPT9Q9UHD8 586 aaPredicted RBP12.12□□□□□ -0.47
GAPVD1-217ENST00000479511 ZMIZ1Q9ULJ6 1067 aa12.12□□□□□ -0.47
GAPVD1-217ENST00000479511 EMP3P54852 163 aa12.11□□□□□ -0.47
GAPVD1-217ENST00000479511 CFHP08603 1231 aa12.1□□□□□ -0.47
GAPVD1-217ENST00000479511 EIF4G2P78344 907 aaKnown RBP eCLIP12.1□□□□□ -0.47
GAPVD1-217ENST00000479511 GRIPAP1Q4V328 841 aa12.1□□□□□ -0.47
GAPVD1-217ENST00000479511 TMEM164Q5U3C3 297 aa12.1□□□□□ -0.47
GAPVD1-217ENST00000479511 STK32AQ8WU08 396 aa12.1□□□□□ -0.47
GAPVD1-217ENST00000479511 ATP6V1AP38606 617 aa12.09□□□□□ -0.47
GAPVD1-217ENST00000479511 NR1H3Q13133 447 aa12.08□□□□□ -0.48
GAPVD1-217ENST00000479511 ELOAQ14241 798 aaKnown RBP12.08□□□□□ -0.48
GAPVD1-217ENST00000479511 PNMA1Q8ND90 353 aa12.08□□□□□ -0.48
GAPVD1-217ENST00000479511 FBXO45P0C2W1 286 aa12.07□□□□□ -0.48
GAPVD1-217ENST00000479511 PHLDB3Q6NSJ2 640 aa12.07□□□□□ -0.48
GAPVD1-217ENST00000479511 PSEN2P49810 448 aa12.06□□□□□ -0.48
GAPVD1-217ENST00000479511 UNCXA6NJT0 531 aa12.05□□□□□ -0.48
GAPVD1-217ENST00000479511 TXNDC2Q86VQ3 553 aa12.05□□□□□ -0.48
GAPVD1-217ENST00000479511 RETREG3Q86VR2 466 aa12.05□□□□□ -0.48
GAPVD1-217ENST00000479511 RABGEF1Q9UJ41 708 aa12.05□□□□□ -0.48
GAPVD1-217ENST00000479511 HOXB1P14653 301 aaPredicted RBP12.04□□□□□ -0.48
GAPVD1-217ENST00000479511 SAMD7Q7Z3H4 446 aa12.04□□□□□ -0.48
GAPVD1-217ENST00000479511 SLAIN2Q9P270 581 aa12.04□□□□□ -0.48
GAPVD1-217ENST00000479511 B4GALNT3Q6L9W6 998 aa12.03□□□□□ -0.48
GAPVD1-217ENST00000479511 LYPD8Q6UX82 237 aa12.03□□□□□ -0.48
GAPVD1-217ENST00000479511 NOVA2Q9UNW9 492 aaKnown RBP12.03□□□□□ -0.48
GAPVD1-217ENST00000479511 USP17L3A6NCW0 530 aa12.02□□□□□ -0.49
GAPVD1-217ENST00000479511 USP17L4A6NCW7 530 aa12.02□□□□□ -0.49
GAPVD1-217ENST00000479511 FAM205CA6NFA0 338 aa12.02□□□□□ -0.49
GAPVD1-217ENST00000479511 HDGFP51858 240 aaKnown RBP12.02□□□□□ -0.49
GAPVD1-217ENST00000479511 DESI1Q6ICB0 168 aa12.02□□□□□ -0.49
GAPVD1-217ENST00000479511 USP17L2Q6R6M4 530 aa12.02□□□□□ -0.49
GAPVD1-217ENST00000479511 USP17L1Q7RTZ2 530 aa12.02□□□□□ -0.49
GAPVD1-217ENST00000479511 ZBBXA8MT70 800 aa12.01□□□□□ -0.49
GAPVD1-217ENST00000479511 FAM98CQ17RN3 349 aaKnown RBP12.01□□□□□ -0.49
GAPVD1-217ENST00000479511 MORN1Q5T089 497 aa12.01□□□□□ -0.49
GAPVD1-217ENST00000479511 NFATC2IPQ8NCF5 419 aa12.01□□□□□ -0.49
GAPVD1-217ENST00000479511 FAM174AQ8TBP5 190 aa12.01□□□□□ -0.49
GAPVD1-217ENST00000479511 SLC27A5Q9Y2P5 690 aa12.01□□□□□ -0.49
GAPVD1-217ENST00000479511 USP17L5A8MUK1 530 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms