RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 PTCH1Q13635 1447 aa10.17□□□□□ -0.78
VCP-205ENST00000479300 ATAD2Q6PL18 1390 aa10.17□□□□□ -0.78
VCP-205ENST00000479300 MYOM2P54296 1465 aa10.17□□□□□ -0.78
VCP-205ENST00000479300 ZNF326Q5BKZ1 582 aaKnown RBP10.16□□□□□ -0.78
VCP-205ENST00000479300 FNBP4Q8N3X1 1017 aaPredicted RBP10.16□□□□□ -0.78
VCP-205ENST00000479300 USP21Q9UK80 565 aa10.16□□□□□ -0.78
VCP-205ENST00000479300 BCL9LQ86UU0 1499 aa10.16□□□□□ -0.78
VCP-205ENST00000479300 PRAG1Q86YV5 1406 aa10.16□□□□□ -0.78
VCP-205ENST00000479300 ITGAEP38570 1179 aa10.14□□□□□ -0.79
VCP-205ENST00000479300 PXDNQ92626 1479 aa10.14□□□□□ -0.79
VCP-205ENST00000479300 TRPC5Q9UL62 973 aaPredicted RBP10.13□□□□□ -0.79
VCP-205ENST00000479300 MARF1Q9Y4F3 1742 aaKnown RBP10.13□□□□□ -0.79
VCP-205ENST00000479300 GLI3P10071 1580 aa10.12□□□□□ -0.79
VCP-205ENST00000479300 KIF1BO60333 1816 aa10.12□□□□□ -0.79
VCP-205ENST00000479300 CDC42BPGQ6DT37 1551 aa10.11□□□□□ -0.79
VCP-205ENST00000479300 PELP1Q8IZL8 1130 aaKnown RBP10.11□□□□□ -0.79
VCP-205ENST00000479300 XPCQ01831 940 aaPredicted RBP10.1□□□□□ -0.79
VCP-205ENST00000479300 ZRANB1Q9UGI0 708 aa10.1□□□□□ -0.79
VCP-205ENST00000479300 HFM1A2PYH4 1435 aa10.09□□□□□ -0.79
VCP-205ENST00000479300 PPLO60437 1756 aa10.09□□□□□ -0.79
VCP-205ENST00000479300 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.09□□□□□ -0.79
VCP-205ENST00000479300 RALGAPBQ86X10 1494 aa10.09□□□□□ -0.79
VCP-205ENST00000479300 NAIPQ13075 1403 aa10.08□□□□□ -0.8
VCP-205ENST00000479300 SLIT2O94813 1529 aa10.08□□□□□ -0.8
VCP-205ENST00000479300 BRWD3Q6RI45 1802 aa10.08□□□□□ -0.8
VCP-205ENST00000479300 PPARGC1BQ86YN6 1023 aaKnown RBP10.08□□□□□ -0.8
VCP-205ENST00000479300 GJD4Q96KN9 370 aaPredicted RBP10.08□□□□□ -0.8
VCP-205ENST00000479300 FOXO3O43524 673 aa10.07□□□□□ -0.8
VCP-205ENST00000479300 ESCO1Q5FWF5 840 aa10.07□□□□□ -0.8
VCP-205ENST00000479300 NPHP3Q7Z494 1330 aa10.07□□□□□ -0.8
VCP-205ENST00000479300 PLEKHH1Q9ULM0 1364 aa10.06□□□□□ -0.8
VCP-205ENST00000479300 VGFO15240 615 aaPredicted RBP10.06□□□□□ -0.8
VCP-205ENST00000479300 DEFB132Q7Z7B7 95 aa10.06□□□□□ -0.8
VCP-205ENST00000479300 CCDC125Q86Z20 511 aa10.06□□□□□ -0.8
VCP-205ENST00000479300 TECPR2O15040 1411 aa10.06□□□□□ -0.8
VCP-205ENST00000479300 USP32Q8NFA0 1604 aa10.05□□□□□ -0.8
VCP-205ENST00000479300 NUTM2FA1L443 756 aa10.05□□□□□ -0.8
VCP-205ENST00000479300 WAPLQ7Z5K2 1190 aa10.05□□□□□ -0.8
VCP-205ENST00000479300 BLMP54132 1417 aaPredicted RBP10.05□□□□□ -0.8
VCP-205ENST00000479300 ADGRF5Q8IZF2 1346 aa10.05□□□□□ -0.8
VCP-205ENST00000479300 FMN2Q9NZ56 1722 aa10.04□□□□□ -0.8
VCP-205ENST00000479300 UNC5CLQ8IV45 518 aa10.04□□□□□ -0.8
VCP-205ENST00000479300 SPATA31A3Q5VYP0 1347 aa10.04□□□□□ -0.8
VCP-205ENST00000479300 RPGRIP1LQ68CZ1 1315 aa10.04□□□□□ -0.8
VCP-205ENST00000479300 LRP5O75197 1615 aa10.04□□□□□ -0.8
VCP-205ENST00000479300 PLCH1Q4KWH8 1693 aa10.02□□□□□ -0.8
VCP-205ENST00000479300 LRPPRCP42704 1394 aaKnown RBP10.02□□□□□ -0.8
VCP-205ENST00000479300 KNDC1Q76NI1 1749 aa10.02□□□□□ -0.8
VCP-205ENST00000479300 ABCA3Q99758 1704 aa10.02□□□□□ -0.8
VCP-205ENST00000479300 IFT172Q9UG01 1749 aa10.02□□□□□ -0.8
VCP-205ENST00000479300 SPATA31E1Q6ZUB1 1445 aa10.01□□□□□ -0.81
VCP-205ENST00000479300 RRBP1Q9P2E9 1410 aaKnown RBP10.01□□□□□ -0.81
VCP-205ENST00000479300 SEPT12Q8IYM1 358 aa10.01□□□□□ -0.81
VCP-205ENST00000479300 CABLES1Q8TDN4 633 aa10.01□□□□□ -0.81
VCP-205ENST00000479300 RNF216Q9NWF9 866 aaPredicted RBP10.01□□□□□ -0.81
VCP-205ENST00000479300 STK26Q9P289 416 aa10.01□□□□□ -0.81
VCP-205ENST00000479300 KIF1AQ12756 1690 aa10.01□□□□□ -0.81
VCP-205ENST00000479300 RGPD8O14715 1765 aaPredicted RBP10.01□□□□□ -0.81
VCP-205ENST00000479300 ABCC11Q96J66 1382 aa10.01□□□□□ -0.81
VCP-205ENST00000479300 ONECUT3O60422 494 aaPredicted RBP10□□□□□ -0.81
VCP-205ENST00000479300 TMEM132EQ6IEE7 984 aa10□□□□□ -0.81
VCP-205ENST00000479300 CCDC144AA2RUR9 1427 aa9.99□□□□□ -0.81
VCP-205ENST00000479300 TNS3Q68CZ2 1445 aa9.99□□□□□ -0.81
VCP-205ENST00000479300 NWD2Q9ULI1 1742 aa9.99□□□□□ -0.81
VCP-205ENST00000479300 VPS72Q15906 364 aa9.99□□□□□ -0.81
VCP-205ENST00000479300 KRT28Q7Z3Y7 464 aa9.99□□□□□ -0.81
VCP-205ENST00000479300 NRAPQ86VF7 1730 aa9.99□□□□□ -0.81
VCP-205ENST00000479300 PIK3C2GO75747 1445 aa9.99□□□□□ -0.81
VCP-205ENST00000479300 PSDA5PKW4 1024 aaPredicted RBP9.98□□□□□ -0.81
VCP-205ENST00000479300 YTHDC2Q9H6S0 1430 aaKnown RBP9.98□□□□□ -0.81
VCP-205ENST00000479300 NRXN1Q9ULB1 1477 aa9.97□□□□□ -0.81
VCP-205ENST00000479300 FAM83GA6ND36 823 aa9.96□□□□□ -0.82
VCP-205ENST00000479300 PLEKHG5O94827 1062 aa9.96□□□□□ -0.82
VCP-205ENST00000479300 HRCP23327 699 aa9.96□□□□□ -0.82
VCP-205ENST00000479300 RGL3Q3MIN7 710 aa9.96□□□□□ -0.82
VCP-205ENST00000479300 KRT27Q7Z3Y8 459 aa9.96□□□□□ -0.82
VCP-205ENST00000479300 TRPM3Q9HCF6 1732 aaPredicted RBP9.96□□□□□ -0.82
VCP-205ENST00000479300 FOXD4L1Q9NU39 408 aa9.95□□□□□ -0.82
VCP-205ENST00000479300 PHF8Q9UPP1 1060 aa9.95□□□□□ -0.82
VCP-205ENST00000479300 SBNO1A3KN83 1393 aa9.95□□□□□ -0.82
VCP-205ENST00000479300 ANKRD30BQ9BXX2 1392 aa9.95□□□□□ -0.82
VCP-205ENST00000479300 TNS1Q9HBL0 1735 aaKnown RBP9.94□□□□□ -0.82
VCP-205ENST00000479300 FAM182BQ5T319 152 aa9.94□□□□□ -0.82
VCP-205ENST00000479300 CRYBG1Q9Y4K1 1723 aa9.93□□□□□ -0.82
VCP-205ENST00000479300 ALS2Q96Q42 1657 aa9.93□□□□□ -0.82
VCP-205ENST00000479300 FAM98CQ17RN3 349 aaKnown RBP9.93□□□□□ -0.82
VCP-205ENST00000479300 SIRT1Q96EB6 747 aa9.93□□□□□ -0.82
VCP-205ENST00000479300 THSD7AQ9UPZ6 1657 aa9.93□□□□□ -0.82
VCP-205ENST00000479300 EN1Q05925 392 aaPredicted RBP9.92□□□□□ -0.82
VCP-205ENST00000479300 SF3B2Q13435 895 aaKnown RBP9.92□□□□□ -0.82
VCP-205ENST00000479300 C14orf93Q9H972 538 aaKnown RBP9.92□□□□□ -0.82
VCP-205ENST00000479300 CCDC9Q9Y3X0 531 aaKnown RBP9.92□□□□□ -0.82
VCP-205ENST00000479300 RGPD1P0DJD0 1748 aa9.92□□□□□ -0.82
VCP-205ENST00000479300 ARHGEF10O15013 1369 aa9.91□□□□□ -0.82
VCP-205ENST00000479300 HOXD11P31277 338 aaPredicted RBP9.91□□□□□ -0.82
VCP-205ENST00000479300 HAP1P54257 671 aaPredicted RBP9.91□□□□□ -0.82
VCP-205ENST00000479300 SAFB2Q14151 953 aaKnown RBP eCLIP9.91□□□□□ -0.82
VCP-205ENST00000479300 CFAP70Q5T0N1 1121 aa9.91□□□□□ -0.82
VCP-205ENST00000479300 LMOD2Q6P5Q4 547 aa9.91□□□□□ -0.82
VCP-205ENST00000479300 PMFBP1Q8TBY8 1022 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms