RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 ADGRB1O14514 1584 aa10.92□□□□□ -0.66
VAPB-205ENST00000476395 ADGRB3O60242 1522 aa10.92□□□□□ -0.66
VAPB-205ENST00000476395 SIGLEC1Q9BZZ2 1709 aa10.91□□□□□ -0.66
VAPB-205ENST00000476395 FRMPD1Q5SYB0 1578 aa10.91□□□□□ -0.66
VAPB-205ENST00000476395 NLRP1Q9C000 1473 aa10.91□□□□□ -0.66
VAPB-205ENST00000476395 QRICH2Q9H0J4 1663 aa10.91□□□□□ -0.66
VAPB-205ENST00000476395 ADGRF5Q8IZF2 1346 aa10.9□□□□□ -0.66
VAPB-205ENST00000476395 USP32Q8NFA0 1604 aa10.9□□□□□ -0.66
VAPB-205ENST00000476395 BRD2P25440 801 aaKnown RBP10.9□□□□□ -0.66
VAPB-205ENST00000476395 SETBP1Q9Y6X0 1596 aa10.9□□□□□ -0.66
VAPB-205ENST00000476395 USP19O94966 1318 aa10.9□□□□□ -0.67
VAPB-205ENST00000476395 LMTK2Q8IWU2 1503 aa10.89□□□□□ -0.67
VAPB-205ENST00000476395 NAP1L5Q96NT1 182 aaPredicted RBP10.89□□□□□ -0.67
VAPB-205ENST00000476395 NKTRP30414 1462 aaKnown RBP10.89□□□□□ -0.67
VAPB-205ENST00000476395 CCDC146Q8IYE0 955 aa10.88□□□□□ -0.67
VAPB-205ENST00000476395 EFCAB2Q5VUJ9 269 aa10.88□□□□□ -0.67
VAPB-205ENST00000476395 DDRGK1Q96HY6 314 aa10.88□□□□□ -0.67
VAPB-205ENST00000476395 BCAR3O75815 825 aa10.87□□□□□ -0.67
VAPB-205ENST00000476395 EIF3AQ14152 1382 aaKnown RBP10.87□□□□□ -0.67
VAPB-205ENST00000476395 FANCAO15360 1455 aa10.87□□□□□ -0.67
VAPB-205ENST00000476395 CFAP70Q5T0N1 1121 aa10.87□□□□□ -0.67
VAPB-205ENST00000476395 IGHDP01880 384 aa10.86□□□□□ -0.67
VAPB-205ENST00000476395 CYB5RLQ6IPT4 315 aa10.86□□□□□ -0.67
VAPB-205ENST00000476395 SPAG9O60271 1321 aaKnown RBP10.86□□□□□ -0.67
VAPB-205ENST00000476395 ARHGEF28Q8N1W1 1705 aaKnown RBP10.86□□□□□ -0.67
VAPB-205ENST00000476395 NPM1P06748 294 aaKnown RBP eCLIP10.86□□□□□ -0.67
VAPB-205ENST00000476395 GOLGA2Q08379 1002 aa10.86□□□□□ -0.67
VAPB-205ENST00000476395 KNSTRNQ9Y448 316 aa10.86□□□□□ -0.67
VAPB-205ENST00000476395 RGS3P49796 1198 aa10.86□□□□□ -0.67
VAPB-205ENST00000476395 PANK2Q9BZ23 570 aa10.86□□□□□ -0.67
VAPB-205ENST00000476395 ZNF518AQ6AHZ1 1483 aa10.85□□□□□ -0.67
VAPB-205ENST00000476395 CENPQQ7L2Z9 268 aaPredicted RBP10.85□□□□□ -0.67
VAPB-205ENST00000476395 SBNO2Q9Y2G9 1366 aa10.85□□□□□ -0.67
VAPB-205ENST00000476395 SLKQ9H2G2 1235 aaPredicted RBP10.85□□□□□ -0.67
VAPB-205ENST00000476395 PIK3C2BO00750 1634 aa10.85□□□□□ -0.67
VAPB-205ENST00000476395 APAF1O14727 1248 aa10.85□□□□□ -0.67
VAPB-205ENST00000476395 ADGRB2O60241 1585 aa10.84□□□□□ -0.67
VAPB-205ENST00000476395 HSP90AA2PQ14568 343 aaPredicted RBP10.83□□□□□ -0.67
VAPB-205ENST00000476395 PAXIP1Q6ZW49 1069 aaPredicted RBP10.83□□□□□ -0.67
VAPB-205ENST00000476395 POLR3AO14802 1390 aaPredicted RBP10.83□□□□□ -0.68
VAPB-205ENST00000476395 TULP4Q9NRJ4 1543 aa10.83□□□□□ -0.68
VAPB-205ENST00000476395 ADGRL1O94910 1474 aa10.82□□□□□ -0.68
VAPB-205ENST00000476395 HECW2Q9P2P5 1572 aa10.82□□□□□ -0.68
VAPB-205ENST00000476395 CFAP65Q6ZU64 1925 aaKnown RBP10.82□□□□□ -0.68
VAPB-205ENST00000476395 STAC3Q96MF2 364 aa10.82□□□□□ -0.68
VAPB-205ENST00000476395 GZF1Q9H116 711 aaPredicted RBP10.82□□□□□ -0.68
VAPB-205ENST00000476395 SEC24BO95487 1268 aa10.82□□□□□ -0.68
VAPB-205ENST00000476395 AAMPQ13685 434 aa10.82□□□□□ -0.68
VAPB-205ENST00000476395 NOS1P29475 1434 aa10.81□□□□□ -0.68
VAPB-205ENST00000476395 TNNQ9UQP3 1299 aa10.81□□□□□ -0.68
VAPB-205ENST00000476395 SAMD1Q6SPF0 538 aaPredicted RBP10.81□□□□□ -0.68
VAPB-205ENST00000476395 CAMSAP1Q5T5Y3 1602 aa10.81□□□□□ -0.68
VAPB-205ENST00000476395 GLI2P10070 1586 aa10.81□□□□□ -0.68
VAPB-205ENST00000476395 NPATQ14207 1427 aa10.81□□□□□ -0.68
VAPB-205ENST00000476395 WDR43Q15061 677 aaKnown RBP eCLIP10.81□□□□□ -0.68
VAPB-205ENST00000476395 FAM161AQ3B820 660 aa10.81□□□□□ -0.68
VAPB-205ENST00000476395 WWC1Q8IX03 1113 aa10.8□□□□□ -0.68
VAPB-205ENST00000476395 ASXL2Q76L83 1435 aa10.8□□□□□ -0.68
VAPB-205ENST00000476395 RBM10P98175 930 aaKnown RBP10.8□□□□□ -0.68
VAPB-205ENST00000476395 CDK11BP21127 795 aaKnown RBP10.79□□□□□ -0.68
VAPB-205ENST00000476395 MYO5BQ9ULV0 1848 aa10.79□□□□□ -0.68
VAPB-205ENST00000476395 NEXMIFQ5QGS0 1516 aa10.79□□□□□ -0.68
VAPB-205ENST00000476395 NSD3Q9BZ95 1437 aa10.79□□□□□ -0.68
VAPB-205ENST00000476395 RLBP1P12271 317 aa10.78□□□□□ -0.68
VAPB-205ENST00000476395 XRCC6P12956 609 aaKnown RBP eCLIP10.78□□□□□ -0.68
VAPB-205ENST00000476395 SPRYD3Q8NCJ5 442 aa10.78□□□□□ -0.68
VAPB-205ENST00000476395 PNNQ9H307 717 aaKnown RBP10.78□□□□□ -0.68
VAPB-205ENST00000476395 COL3A1P02461 1466 aaPredicted RBP10.78□□□□□ -0.68
VAPB-205ENST00000476395 KIF3BO15066 747 aa10.78□□□□□ -0.68
VAPB-205ENST00000476395 HSP90AA1P07900 732 aaKnown RBP10.77□□□□□ -0.68
VAPB-205ENST00000476395 ANKRD26Q9UPS8 1709 aa10.77□□□□□ -0.69
VAPB-205ENST00000476395 E9PSI1 815 aa10.77□□□□□ -0.69
VAPB-205ENST00000476395 CDCA8Q53HL2 280 aa10.77□□□□□ -0.69
VAPB-205ENST00000476395 ABCC3O15438 1527 aa10.77□□□□□ -0.69
VAPB-205ENST00000476395 PANK1Q8TE04 598 aa10.76□□□□□ -0.69
VAPB-205ENST00000476395 KANK1Q14678 1352 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 ERBB4Q15303 1308 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 RIMBP3CA6NJZ7 1639 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 RIMBP3BA6NNM3 1639 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 RIMBP3Q9UFD9 1639 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 CD109Q6YHK3 1445 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 SLC12A5Q9H2X9 1139 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 PCDHB15Q9Y5E8 787 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 CD163L1Q9NR16 1453 aa10.75□□□□□ -0.69
VAPB-205ENST00000476395 C14orf93Q9H972 538 aaKnown RBP10.75□□□□□ -0.69
VAPB-205ENST00000476395 CLTCQ00610 1675 aaKnown RBP10.74□□□□□ -0.69
VAPB-205ENST00000476395 RARSP54136 660 aaKnown RBP10.74□□□□□ -0.69
VAPB-205ENST00000476395 PDE3AQ14432 1141 aa10.74□□□□□ -0.69
VAPB-205ENST00000476395 POGZQ7Z3K3 1410 aa10.73□□□□□ -0.69
VAPB-205ENST00000476395 FBXO3Q9UK99 471 aa10.73□□□□□ -0.69
VAPB-205ENST00000476395 COG6Q9Y2V7 657 aa10.73□□□□□ -0.69
VAPB-205ENST00000476395 MLH3Q9UHC1 1453 aa10.73□□□□□ -0.69
VAPB-205ENST00000476395 CENPJQ9HC77 1338 aaPredicted RBP10.72□□□□□ -0.69
VAPB-205ENST00000476395 RRP9O43818 475 aaKnown RBP10.72□□□□□ -0.69
VAPB-205ENST00000476395 CLUAP1Q96AJ1 413 aa10.72□□□□□ -0.69
VAPB-205ENST00000476395 PPP6R1Q9UPN7 881 aa10.72□□□□□ -0.69
VAPB-205ENST00000476395 ANTXR1Q9H6X2 564 aa10.72□□□□□ -0.69
VAPB-205ENST00000476395 RRP7AQ9Y3A4 280 aaKnown RBP10.72□□□□□ -0.69
VAPB-205ENST00000476395 NINLQ9Y2I6 1382 aa10.71□□□□□ -0.69
VAPB-205ENST00000476395 TMEM132EQ6IEE7 984 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms