RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ONECUT3O60422 494 aaPredicted RBP7.9□□□□□ -1.14
USP4-209ENST00000475873 KRT27Q7Z3Y8 459 aa7.9□□□□□ -1.14
USP4-209ENST00000475873 EZH2Q15910 746 aaKnown RBP7.89□□□□□ -1.15
USP4-209ENST00000475873 FAM182BQ5T319 152 aa7.89□□□□□ -1.15
USP4-209ENST00000475873 RGPD1P0DJD0 1748 aa7.89□□□□□ -1.15
USP4-209ENST00000475873 RRP7BPQ9NSQ0 103 aa7.88□□□□□ -1.15
USP4-209ENST00000475873 NINLQ9Y2I6 1382 aa7.87□□□□□ -1.15
USP4-209ENST00000475873 CAMKK2Q96RR4 588 aa7.87□□□□□ -1.15
USP4-209ENST00000475873 NUP188Q5SRE5 1749 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 KANK1Q14678 1352 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 CROCC2H7BZ55 1655 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 USP32Q8NFA0 1604 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 PTPN23Q9H3S7 1636 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 XPCQ01831 940 aaPredicted RBP7.86□□□□□ -1.15
USP4-209ENST00000475873 VPS72Q15906 364 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.86□□□□□ -1.15
USP4-209ENST00000475873 RPRD2Q5VT52 1461 aaKnown RBP7.86□□□□□ -1.15
USP4-209ENST00000475873 ABCC5O15440 1437 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 PLCH1Q4KWH8 1693 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 RREB1Q92766 1687 aa7.86□□□□□ -1.15
USP4-209ENST00000475873 ADGRL2O95490 1459 aa7.84□□□□□ -1.15
USP4-209ENST00000475873 HDGFP51858 240 aaKnown RBP7.84□□□□□ -1.15
USP4-209ENST00000475873 CHD4Q14839 1912 aa7.84□□□□□ -1.16
USP4-209ENST00000475873 GOLGB1Q14789 3259 aaKnown RBP7.83□□□□□ -1.16
USP4-209ENST00000475873 CHGAP10645 457 aaKnown RBP7.83□□□□□ -1.16
USP4-209ENST00000475873 MYOM3Q5VTT5 1437 aa7.83□□□□□ -1.16
USP4-209ENST00000475873 NRAPQ86VF7 1730 aa7.83□□□□□ -1.16
USP4-209ENST00000475873 NWD2Q9ULI1 1742 aa7.83□□□□□ -1.16
USP4-209ENST00000475873 ROBO2Q9HCK4 1378 aa7.83□□□□□ -1.16
USP4-209ENST00000475873 FAM98CQ17RN3 349 aaKnown RBP7.82□□□□□ -1.16
USP4-209ENST00000475873 NRKQ7Z2Y5 1582 aa7.82□□□□□ -1.16
USP4-209ENST00000475873 SPON1Q9HCB6 807 aa7.82□□□□□ -1.16
USP4-209ENST00000475873 THSD7AQ9UPZ6 1657 aa7.82□□□□□ -1.16
USP4-209ENST00000475873 FOXO3O43524 673 aa7.81□□□□□ -1.16
USP4-209ENST00000475873 KCNQ2O43526 872 aa7.81□□□□□ -1.16
USP4-209ENST00000475873 PPP1R1BQ9UD71 204 aaPredicted RBP7.81□□□□□ -1.16
USP4-209ENST00000475873 MYOM1P52179 1685 aa7.81□□□□□ -1.16
USP4-209ENST00000475873 ABCA3Q99758 1704 aa7.81□□□□□ -1.16
USP4-209ENST00000475873 NPHP3Q7Z494 1330 aa7.8□□□□□ -1.16
USP4-209ENST00000475873 CASZ1Q86V15 1759 aa7.8□□□□□ -1.16
USP4-209ENST00000475873 CABLES1Q8TDN4 633 aa7.8□□□□□ -1.16
USP4-209ENST00000475873 PDGFDQ9GZP0 370 aaPredicted RBP7.8□□□□□ -1.16
USP4-209ENST00000475873 ADGRB2O60241 1585 aa7.8□□□□□ -1.16
USP4-209ENST00000475873 E9PCH4 1651 aa7.79□□□□□ -1.16
USP4-209ENST00000475873 SPATA31A3Q5VYP0 1347 aa7.79□□□□□ -1.16
USP4-209ENST00000475873 DAPK1P53355 1430 aa7.79□□□□□ -1.16
USP4-209ENST00000475873 TRIM37O94972 964 aa7.79□□□□□ -1.16
USP4-209ENST00000475873 CCDC9Q9Y3X0 531 aaKnown RBP7.79□□□□□ -1.16
USP4-209ENST00000475873 IQGAP3Q86VI3 1631 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 SHANK3Q9BYB0 1731 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 A0A0G2JS52 829 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 DCAF8L1A6NGE4 600 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 PTGER2P43116 358 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 MYT1Q01538 1121 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 ESCO1Q5FWF5 840 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 PARD3Q8TEW0 1356 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 PRAG1Q86YV5 1406 aa7.78□□□□□ -1.16
USP4-209ENST00000475873 CDC42BPGQ6DT37 1551 aa7.77□□□□□ -1.17
USP4-209ENST00000475873 FAM83GA6ND36 823 aa7.77□□□□□ -1.17
USP4-209ENST00000475873 GIGYF1O75420 1035 aaPredicted RBP7.77□□□□□ -1.17
USP4-209ENST00000475873 CHIC2Q9UKJ5 165 aa7.77□□□□□ -1.17
USP4-209ENST00000475873 APBA3O96018 575 aa7.76□□□□□ -1.17
USP4-209ENST00000475873 KANK4Q5T7N3 995 aaPredicted RBP7.76□□□□□ -1.17
USP4-209ENST00000475873 ANO8Q9HCE9 1232 aaPredicted RBP7.76□□□□□ -1.17
USP4-209ENST00000475873 NEXMIFQ5QGS0 1516 aa7.75□□□□□ -1.17
USP4-209ENST00000475873 SPATA31A5Q5VU36 1347 aa7.75□□□□□ -1.17
USP4-209ENST00000475873 SPATA31A7Q8IWB4 1347 aa7.75□□□□□ -1.17
USP4-209ENST00000475873 NUTM2FA1L443 756 aa7.74□□□□□ -1.17
USP4-209ENST00000475873 PLEKHG5O94827 1062 aa7.74□□□□□ -1.17
USP4-209ENST00000475873 SLC34A2O95436 690 aa7.74□□□□□ -1.17
USP4-209ENST00000475873 SYT17Q9BSW7 474 aa7.74□□□□□ -1.17
USP4-209ENST00000475873 FHDC1Q9C0D6 1143 aaPredicted RBP7.74□□□□□ -1.17
USP4-209ENST00000475873 ANKRD30AQ9BXX3 1397 aa7.73□□□□□ -1.17
USP4-209ENST00000475873 TNS3Q68CZ2 1445 aa7.73□□□□□ -1.17
USP4-209ENST00000475873 HFM1A2PYH4 1435 aa7.72□□□□□ -1.17
USP4-209ENST00000475873 ZBTB7AO95365 584 aa7.72□□□□□ -1.17
USP4-209ENST00000475873 SGIP1Q9BQI5 828 aa7.72□□□□□ -1.17
USP4-209ENST00000475873 BTG4Q9NY30 223 aa7.72□□□□□ -1.17
USP4-209ENST00000475873 CCDC144AA2RUR9 1427 aa7.71□□□□□ -1.17
USP4-209ENST00000475873 NAIPQ13075 1403 aa7.71□□□□□ -1.17
USP4-209ENST00000475873 ANKRD50Q9ULJ7 1429 aa7.71□□□□□ -1.17
USP4-209ENST00000475873 NBPF8Q3BBV2 869 aa7.71□□□□□ -1.18
USP4-209ENST00000475873 NBPF14Q5TI25 921 aa7.71□□□□□ -1.18
USP4-209ENST00000475873 FAM196AQ6ZSG2 479 aa7.71□□□□□ -1.18
USP4-209ENST00000475873 KRT28Q7Z3Y7 464 aa7.71□□□□□ -1.18
USP4-209ENST00000475873 DLC1Q96QB1 1528 aa7.7□□□□□ -1.18
USP4-209ENST00000475873 CAPN15O75808 1086 aa7.7□□□□□ -1.18
USP4-209ENST00000475873 ATF5Q9Y2D1 282 aaPredicted RBP7.7□□□□□ -1.18
USP4-209ENST00000475873 LRPPRCP42704 1394 aaKnown RBP7.7□□□□□ -1.18
USP4-209ENST00000475873 KIF1AQ12756 1690 aa7.7□□□□□ -1.18
USP4-209ENST00000475873 FMN2Q9NZ56 1722 aa7.69□□□□□ -1.18
USP4-209ENST00000475873 RGPD8O14715 1765 aaPredicted RBP7.69□□□□□ -1.18
USP4-209ENST00000475873 COL14A1Q05707 1796 aaKnown RBP7.69□□□□□ -1.18
USP4-209ENST00000475873 HSPA6P17066 643 aa7.69□□□□□ -1.18
USP4-209ENST00000475873 COL13A1Q5TAT6 717 aaPredicted RBP7.69□□□□□ -1.18
USP4-209ENST00000475873 PCNTO95613 3336 aa7.69□□□□□ -1.18
USP4-209ENST00000475873 RRBP1Q9P2E9 1410 aaKnown RBP7.69□□□□□ -1.18
USP4-209ENST00000475873 HAP1P54257 671 aaPredicted RBP7.68□□□□□ -1.18
USP4-209ENST00000475873 PTF1AQ7RTS3 328 aa7.68□□□□□ -1.18
USP4-209ENST00000475873 PROM2Q8N271 834 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms