RNA–Protein interactions for RNA: ENST00000475560.5

SRGAP3-205, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 703 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-205ENST00000475560 SOX11P35716 441 aa7.98□□□□□ -1.13
SRGAP3-205ENST00000475560 PRR7Q8TB68 274 aa7.98□□□□□ -1.13
SRGAP3-205ENST00000475560 FAM198AQ9UFP1 575 aa7.98□□□□□ -1.13
SRGAP3-205ENST00000475560 KDM4AO75164 1064 aa7.97□□□□□ -1.13
SRGAP3-205ENST00000475560 HMGB1P09429 215 aaKnown RBP7.97□□□□□ -1.13
SRGAP3-205ENST00000475560 IGSF5Q9NSI5 407 aa7.97□□□□□ -1.13
SRGAP3-205ENST00000475560 MAFBQ9Y5Q3 323 aaPredicted RBP7.97□□□□□ -1.13
SRGAP3-205ENST00000475560 B4GALNT3Q6L9W6 998 aa7.96□□□□□ -1.14
SRGAP3-205ENST00000475560 ZNF454Q8N9F8 522 aa7.96□□□□□ -1.14
SRGAP3-205ENST00000475560 ADAM33Q9BZ11 813 aa7.96□□□□□ -1.14
SRGAP3-205ENST00000475560 FDX1P10109 184 aa7.95□□□□□ -1.14
SRGAP3-205ENST00000475560 DNAJB2P25686 324 aa7.95□□□□□ -1.14
SRGAP3-205ENST00000475560 SEMA3FQ13275 785 aa7.95□□□□□ -1.14
SRGAP3-205ENST00000475560 CCER1Q8TC90 406 aaPredicted RBP7.95□□□□□ -1.14
SRGAP3-205ENST00000475560 USP46P62068 366 aa7.94□□□□□ -1.14
SRGAP3-205ENST00000475560 RSPH4AQ5TD94 716 aa7.94□□□□□ -1.14
SRGAP3-205ENST00000475560 TBC1D9Q6ZT07 1266 aa7.94□□□□□ -1.14
SRGAP3-205ENST00000475560 TXNDC2Q86VQ3 553 aa7.94□□□□□ -1.14
SRGAP3-205ENST00000475560 LRRN4Q8WUT4 740 aa7.94□□□□□ -1.14
SRGAP3-205ENST00000475560 MARVELD3Q96A59 401 aa7.94□□□□□ -1.14
SRGAP3-205ENST00000475560 NUDT18Q6ZVK8 323 aa7.93□□□□□ -1.14
SRGAP3-205ENST00000475560 TMEM134Q9H6X4 195 aa7.93□□□□□ -1.14
SRGAP3-205ENST00000475560 PCDHGC3Q9UN70 934 aa7.93□□□□□ -1.14
SRGAP3-205ENST00000475560 HOXA2O43364 376 aa7.92□□□□□ -1.14
SRGAP3-205ENST00000475560 ERCC3P19447 782 aa7.92□□□□□ -1.14
SRGAP3-205ENST00000475560 ELOAQ14241 798 aaKnown RBP7.92□□□□□ -1.14
SRGAP3-205ENST00000475560 KANK4Q5T7N3 995 aaPredicted RBP7.92□□□□□ -1.14
SRGAP3-205ENST00000475560 RDH13Q8NBN7 331 aa7.92□□□□□ -1.14
SRGAP3-205ENST00000475560 PUS7Q96PZ0 661 aaKnown RBP7.92□□□□□ -1.14
SRGAP3-205ENST00000475560 C3orf80F5H4A9 247 aa7.91□□□□□ -1.14
SRGAP3-205ENST00000475560 ATP9BO43861 1147 aa7.91□□□□□ -1.14
SRGAP3-205ENST00000475560 HSP90B1P14625 803 aaKnown RBP7.91□□□□□ -1.14
SRGAP3-205ENST00000475560 HOXB3P14651 431 aaPredicted RBP7.91□□□□□ -1.14
SRGAP3-205ENST00000475560 GCGRP47871 477 aa7.91□□□□□ -1.14
SRGAP3-205ENST00000475560 SPNS2Q8IVW8 549 aa7.91□□□□□ -1.14
SRGAP3-205ENST00000475560 HELBQ8NG08 1087 aaPredicted RBP7.91□□□□□ -1.14
SRGAP3-205ENST00000475560 EPS8L1Q8TE68 723 aa7.91□□□□□ -1.14
SRGAP3-205ENST00000475560 EMP3P54852 163 aa7.9□□□□□ -1.14
SRGAP3-205ENST00000475560 MMRN1Q13201 1228 aa7.9□□□□□ -1.14
SRGAP3-205ENST00000475560 MTMR2Q13614 643 aa7.9□□□□□ -1.14
SRGAP3-205ENST00000475560 TSKSQ9UJT2 592 aa7.9□□□□□ -1.14
SRGAP3-205ENST00000475560 TMEM164Q5U3C3 297 aa7.89□□□□□ -1.15
SRGAP3-205ENST00000475560 PHLDB3Q6NSJ2 640 aa7.89□□□□□ -1.15
SRGAP3-205ENST00000475560 TATDN2Q93075 761 aa7.89□□□□□ -1.15
SRGAP3-205ENST00000475560 MRRFQ96E11 262 aaKnown RBP7.89□□□□□ -1.15
SRGAP3-205ENST00000475560 KIAA1522Q9P206 1035 aaPredicted RBP7.89□□□□□ -1.15
SRGAP3-205ENST00000475560 COL9A1P20849 921 aa7.88□□□□□ -1.15
SRGAP3-205ENST00000475560 EIF4G2P78344 907 aaKnown RBP eCLIP7.88□□□□□ -1.15
SRGAP3-205ENST00000475560 DNAJC14Q6Y2X3 702 aaPredicted RBP7.88□□□□□ -1.15
SRGAP3-205ENST00000475560 PNMA1Q8ND90 353 aa7.88□□□□□ -1.15
SRGAP3-205ENST00000475560 TSC1Q92574 1164 aa7.88□□□□□ -1.15
SRGAP3-205ENST00000475560 SIRT1Q96EB6 747 aa7.88□□□□□ -1.15
SRGAP3-205ENST00000475560 PNMA3Q9UL41 463 aa7.88□□□□□ -1.15
SRGAP3-205ENST00000475560 CFAP99D6REC4 459 aa7.87□□□□□ -1.15
SRGAP3-205ENST00000475560 ARID4AP29374 1257 aaPredicted RBP7.87□□□□□ -1.15
SRGAP3-205ENST00000475560 GUCA2AQ02747 115 aa7.87□□□□□ -1.15
SRGAP3-205ENST00000475560 DOK7Q18PE1 504 aa7.87□□□□□ -1.15
SRGAP3-205ENST00000475560 SLF2Q8IX21 1173 aa7.87□□□□□ -1.15
SRGAP3-205ENST00000475560 NBPF26B4DH59 902 aa7.86□□□□□ -1.15
SRGAP3-205ENST00000475560 RIMBP2O15034 1052 aa7.86□□□□□ -1.15
SRGAP3-205ENST00000475560 STK32AQ8WU08 396 aa7.86□□□□□ -1.15
SRGAP3-205ENST00000475560 HLA-CQ95604 372 aa7.86□□□□□ -1.15
SRGAP3-205ENST00000475560 ZMIZ1Q9ULJ6 1067 aa7.86□□□□□ -1.15
SRGAP3-205ENST00000475560 HOXB1P14653 301 aaPredicted RBP7.85□□□□□ -1.15
SRGAP3-205ENST00000475560 SSFA2P28290 1259 aa7.85□□□□□ -1.15
SRGAP3-205ENST00000475560 NR6A1Q15406 480 aa7.85□□□□□ -1.15
SRGAP3-205ENST00000475560 PACS2Q86VP3 889 aa7.85□□□□□ -1.15
SRGAP3-205ENST00000475560 HS3ST6Q96QI5 342 aa7.85□□□□□ -1.15
SRGAP3-205ENST00000475560 NOM1Q5C9Z4 860 aaKnown RBP7.84□□□□□ -1.15
SRGAP3-205ENST00000475560 NOVA2Q9UNW9 492 aaKnown RBP7.84□□□□□ -1.15
SRGAP3-205ENST00000475560 POTEB3A0JP26 581 aa7.83□□□□□ -1.16
SRGAP3-205ENST00000475560 FAM205CA6NFA0 338 aa7.83□□□□□ -1.16
SRGAP3-205ENST00000475560 NUDT7P0C024 238 aa7.83□□□□□ -1.16
SRGAP3-205ENST00000475560 ZNF16P17020 682 aaPredicted RBP7.83□□□□□ -1.16
SRGAP3-205ENST00000475560 POTEBQ6S5H4 581 aa7.83□□□□□ -1.16
SRGAP3-205ENST00000475560 SOWAHDA6NJG2 315 aa7.82□□□□□ -1.16
SRGAP3-205ENST00000475560 TRIM6-TRIM34B2RNG4 842 aa7.82□□□□□ -1.16
SRGAP3-205ENST00000475560 C6orf229H3BNL8 230 aa7.82□□□□□ -1.16
SRGAP3-205ENST00000475560 SLC10A3P09131 477 aa7.82□□□□□ -1.16
SRGAP3-205ENST00000475560 NFATC2IPQ8NCF5 419 aa7.82□□□□□ -1.16
SRGAP3-205ENST00000475560 BCL2L13Q9BXK5 485 aa7.82□□□□□ -1.16
SRGAP3-205ENST00000475560 ZSWIM6Q9HCJ5 1215 aa7.82□□□□□ -1.16
SRGAP3-205ENST00000475560 PPP1R3GB7ZBB8 358 aa7.81□□□□□ -1.16
SRGAP3-205ENST00000475560 SMAPO00193 183 aa7.81□□□□□ -1.16
SRGAP3-205ENST00000475560 CDK11BP21127 795 aaKnown RBP7.81□□□□□ -1.16
SRGAP3-205ENST00000475560 NR1H3Q13133 447 aa7.81□□□□□ -1.16
SRGAP3-205ENST00000475560 KHSRPQ92945 711 aaKnown RBP eCLIP7.81□□□□□ -1.16
SRGAP3-205ENST00000475560 BCL2L12Q9HB09 334 aa7.81□□□□□ -1.16
SRGAP3-205ENST00000475560 CDK11AQ9UQ88 783 aaPredicted RBP7.81□□□□□ -1.16
SRGAP3-205ENST00000475560 PIK3CDO00329 1044 aa7.8□□□□□ -1.16
SRGAP3-205ENST00000475560 ARSIQ5FYB1 569 aa7.8□□□□□ -1.16
SRGAP3-205ENST00000475560 KRTAP3-3Q9BYR6 98 aa7.8□□□□□ -1.16
SRGAP3-205ENST00000475560 KRTAP3-2Q9BYR7 98 aa7.8□□□□□ -1.16
SRGAP3-205ENST00000475560 SLAIN2Q9P270 581 aa7.8□□□□□ -1.16
SRGAP3-205ENST00000475560 USP17L3A6NCW0 530 aa7.79□□□□□ -1.16
SRGAP3-205ENST00000475560 USP17L4A6NCW7 530 aa7.79□□□□□ -1.16
SRGAP3-205ENST00000475560 FAM196BA6NMK8 535 aa7.79□□□□□ -1.16
SRGAP3-205ENST00000475560 SKIP12755 728 aa7.79□□□□□ -1.16
SRGAP3-205ENST00000475560 PTPREP23469 700 aa7.79□□□□□ -1.16
SRGAP3-205ENST00000475560 MARSP56192 900 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms