RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 SCUBE2Q9NQ36 999 aa9.32□□□□□ -0.92
ATG4A-207ENST00000474825 PPLO60437 1756 aa9.32□□□□□ -0.92
ATG4A-207ENST00000474825 ZNF326Q5BKZ1 582 aaKnown RBP9.31□□□□□ -0.92
ATG4A-207ENST00000474825 SETBP1Q9Y6X0 1596 aa9.31□□□□□ -0.92
ATG4A-207ENST00000474825 SCAF11Q99590 1463 aaKnown RBP9.3□□□□□ -0.92
ATG4A-207ENST00000474825 ILDR1Q86SU0 546 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-207ENST00000474825 CFAP65Q6ZU64 1925 aaKnown RBP9.3□□□□□ -0.92
ATG4A-207ENST00000474825 WASHC2AQ641Q2 1341 aa9.3□□□□□ -0.92
ATG4A-207ENST00000474825 FER1L4A9Z1Z3 1794 aa9.29□□□□□ -0.92
ATG4A-207ENST00000474825 C3P01024 1663 aa9.29□□□□□ -0.92
ATG4A-207ENST00000474825 ADGRB1O14514 1584 aa9.29□□□□□ -0.92
ATG4A-207ENST00000474825 C11orf95C9JLR9 678 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-207ENST00000474825 CHGAP10645 457 aaKnown RBP9.29□□□□□ -0.92
ATG4A-207ENST00000474825 CFAP70Q5T0N1 1121 aa9.29□□□□□ -0.92
ATG4A-207ENST00000474825 TESK2Q96S53 571 aa9.29□□□□□ -0.92
ATG4A-207ENST00000474825 RIMS1Q86UR5 1692 aaKnown RBP9.29□□□□□ -0.92
ATG4A-207ENST00000474825 CCDC7Q96M83 1385 aa9.28□□□□□ -0.92
ATG4A-207ENST00000474825 TMEM2Q9UHN6 1383 aa9.28□□□□□ -0.92
ATG4A-207ENST00000474825 ST20-MTHFSA0A0A6YYL1 179 aa9.28□□□□□ -0.92
ATG4A-207ENST00000474825 CEBPAP49715 358 aaPredicted RBP9.28□□□□□ -0.92
ATG4A-207ENST00000474825 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.28□□□□□ -0.92
ATG4A-207ENST00000474825 FAM163AQ96GL9 167 aaPredicted RBP9.28□□□□□ -0.92
ATG4A-207ENST00000474825 HIRIP3Q9BW71 556 aaPredicted RBP9.28□□□□□ -0.92
ATG4A-207ENST00000474825 RIMS2Q9UQ26 1411 aa9.28□□□□□ -0.92
ATG4A-207ENST00000474825 ARHGAP23Q9P227 1491 aa9.28□□□□□ -0.92
ATG4A-207ENST00000474825 IQGAP1P46940 1657 aa9.27□□□□□ -0.93
ATG4A-207ENST00000474825 SETD1BQ9UPS6 1966 aaKnown RBP9.27□□□□□ -0.93
ATG4A-207ENST00000474825 ATN1P54259 1190 aaPredicted RBP9.27□□□□□ -0.93
ATG4A-207ENST00000474825 SLIT1O75093 1534 aa9.26□□□□□ -0.93
ATG4A-207ENST00000474825 SBNO2Q9Y2G9 1366 aa9.26□□□□□ -0.93
ATG4A-207ENST00000474825 SLC24A1O60721 1099 aa9.26□□□□□ -0.93
ATG4A-207ENST00000474825 HDGFP51858 240 aaKnown RBP9.26□□□□□ -0.93
ATG4A-207ENST00000474825 HSPA2P54652 639 aa9.26□□□□□ -0.93
ATG4A-207ENST00000474825 KIF7Q2M1P5 1343 aa9.26□□□□□ -0.93
ATG4A-207ENST00000474825 UBR1Q8IWV7 1749 aa9.25□□□□□ -0.93
ATG4A-207ENST00000474825 MYO5BQ9ULV0 1848 aa9.24□□□□□ -0.93
ATG4A-207ENST00000474825 THEMISQ8N1K5 641 aaPredicted RBP9.24□□□□□ -0.93
ATG4A-207ENST00000474825 CCDC61Q9Y6R9 512 aa9.24□□□□□ -0.93
ATG4A-207ENST00000474825 ASXL1Q8IXJ9 1541 aa9.24□□□□□ -0.93
ATG4A-207ENST00000474825 EIF3AQ14152 1382 aaKnown RBP9.24□□□□□ -0.93
ATG4A-207ENST00000474825 PLEKHG1Q9ULL1 1385 aa9.24□□□□□ -0.93
ATG4A-207ENST00000474825 ALKQ9UM73 1620 aa9.23□□□□□ -0.93
ATG4A-207ENST00000474825 MED14O60244 1454 aa9.23□□□□□ -0.93
ATG4A-207ENST00000474825 POTEFA5A3E0 1075 aa9.23□□□□□ -0.93
ATG4A-207ENST00000474825 DDX10Q13206 875 aaKnown RBP9.23□□□□□ -0.93
ATG4A-207ENST00000474825 MYO3AQ8NEV4 1616 aa9.23□□□□□ -0.93
ATG4A-207ENST00000474825 POLR1AO95602 1720 aaPredicted RBP9.22□□□□□ -0.93
ATG4A-207ENST00000474825 LTKP29376 864 aa9.22□□□□□ -0.93
ATG4A-207ENST00000474825 FBXO41Q8TF61 875 aa9.22□□□□□ -0.93
ATG4A-207ENST00000474825 SIRT1Q96EB6 747 aa9.22□□□□□ -0.93
ATG4A-207ENST00000474825 PUS7Q96PZ0 661 aaKnown RBP9.22□□□□□ -0.93
ATG4A-207ENST00000474825 ABCC11Q96J66 1382 aa9.22□□□□□ -0.93
ATG4A-207ENST00000474825 LMTK3Q96Q04 1460 aa9.21□□□□□ -0.93
ATG4A-207ENST00000474825 NRXN3Q9Y4C0 1643 aa9.21□□□□□ -0.93
ATG4A-207ENST00000474825 NUTM2DQ5VT03 806 aaPredicted RBP9.21□□□□□ -0.94
ATG4A-207ENST00000474825 KIF12Q96FN5 646 aa9.21□□□□□ -0.94
ATG4A-207ENST00000474825 TSPYL2Q9H2G4 693 aaPredicted RBP9.21□□□□□ -0.94
ATG4A-207ENST00000474825 LRPPRCP42704 1394 aaKnown RBP9.21□□□□□ -0.94
ATG4A-207ENST00000474825 ADAMTS13Q76LX8 1427 aa9.21□□□□□ -0.94
ATG4A-207ENST00000474825 DLC1Q96QB1 1528 aa9.21□□□□□ -0.94
ATG4A-207ENST00000474825 CEP170BQ9Y4F5 1589 aaPredicted RBP9.2□□□□□ -0.94
ATG4A-207ENST00000474825 ZNF142P52746 1687 aaPredicted RBP9.2□□□□□ -0.94
ATG4A-207ENST00000474825 SETD1AO15047 1707 aaKnown RBP9.2□□□□□ -0.94
ATG4A-207ENST00000474825 TMF1P82094 1093 aa9.2□□□□□ -0.94
ATG4A-207ENST00000474825 TMEM132EQ6IEE7 984 aa9.2□□□□□ -0.94
ATG4A-207ENST00000474825 BMP2KQ9NSY1 1161 aaPredicted RBP9.2□□□□□ -0.94
ATG4A-207ENST00000474825 DISP3Q9P2K9 1392 aa9.2□□□□□ -0.94
ATG4A-207ENST00000474825 TECPR2O15040 1411 aa9.2□□□□□ -0.94
ATG4A-207ENST00000474825 YTHDC2Q9H6S0 1430 aaKnown RBP9.2□□□□□ -0.94
ATG4A-207ENST00000474825 CDCA8Q53HL2 280 aa9.19□□□□□ -0.94
ATG4A-207ENST00000474825 TXNDC2Q86VQ3 553 aa9.19□□□□□ -0.94
ATG4A-207ENST00000474825 MIER1Q8N108 512 aa9.19□□□□□ -0.94
ATG4A-207ENST00000474825 TBX22Q9Y458 520 aa9.19□□□□□ -0.94
ATG4A-207ENST00000474825 CENPJQ9HC77 1338 aaPredicted RBP9.19□□□□□ -0.94
ATG4A-207ENST00000474825 TIE1P35590 1138 aa9.18□□□□□ -0.94
ATG4A-207ENST00000474825 TRAK1Q9UPV9 953 aa9.18□□□□□ -0.94
ATG4A-207ENST00000474825 EID1Q9Y6B2 187 aa9.18□□□□□ -0.94
ATG4A-207ENST00000474825 FAM135BQ49AJ0 1406 aa9.17□□□□□ -0.94
ATG4A-207ENST00000474825 METP08581 1390 aa9.17□□□□□ -0.94
ATG4A-207ENST00000474825 PIK3R4Q99570 1358 aa9.17□□□□□ -0.94
ATG4A-207ENST00000474825 DIP2AQ14689 1571 aa9.16□□□□□ -0.94
ATG4A-207ENST00000474825 PER1O15534 1290 aaPredicted RBP9.16□□□□□ -0.94
ATG4A-207ENST00000474825 CERKQ8TCT0 537 aa9.16□□□□□ -0.94
ATG4A-207ENST00000474825 ARHGEF28Q8N1W1 1705 aaKnown RBP9.15□□□□□ -0.94
ATG4A-207ENST00000474825 CCER2I3L3R5 266 aa9.14□□□□□ -0.95
ATG4A-207ENST00000474825 ANKLE2Q86XL3 938 aa9.14□□□□□ -0.95
ATG4A-207ENST00000474825 CDAN1Q8IWY9 1227 aa9.14□□□□□ -0.95
ATG4A-207ENST00000474825 TRPC6Q9Y210 931 aa9.14□□□□□ -0.95
ATG4A-207ENST00000474825 CPS1P31327 1500 aa9.14□□□□□ -0.95
ATG4A-207ENST00000474825 KNDC1Q76NI1 1749 aa9.14□□□□□ -0.95
ATG4A-207ENST00000474825 PTPRUQ92729 1446 aa9.14□□□□□ -0.95
ATG4A-207ENST00000474825 KTN1Q86UP2 1357 aaKnown RBP9.12□□□□□ -0.95
ATG4A-207ENST00000474825 EVC2Q86UK5 1308 aa9.12□□□□□ -0.95
ATG4A-207ENST00000474825 TULP4Q9NRJ4 1543 aa9.12□□□□□ -0.95
ATG4A-207ENST00000474825 ANP32CO43423 234 aa9.12□□□□□ -0.95
ATG4A-207ENST00000474825 PROM2Q8N271 834 aa9.12□□□□□ -0.95
ATG4A-207ENST00000474825 PRAM1Q96QH2 718 aa9.12□□□□□ -0.95
ATG4A-207ENST00000474825 PRKRIP1Q9H875 184 aaPredicted RBP9.12□□□□□ -0.95
ATG4A-207ENST00000474825 STK26Q9P289 416 aa9.12□□□□□ -0.95
ATG4A-207ENST00000474825 PTCH1Q13635 1447 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms