RNA–Protein interactions for RNA: ENST00000474289.6

ECHDC1-214, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ECHDC1, Length 2,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-214ENST00000474289 GAS2L3Q86XJ1 694 aa23.51■■□□□ 1.35
ECHDC1-214ENST00000474289 TPM2P07951 284 aa23.51■■□□□ 1.35
ECHDC1-214ENST00000474289 HSCBQ8IWL3 235 aa23.51■■□□□ 1.35
ECHDC1-214ENST00000474289 BCL2L13Q9BXK5 485 aa23.51■■□□□ 1.35
ECHDC1-214ENST00000474289 SCAF11Q99590 1463 aaKnown RBP23.51■■□□□ 1.35
ECHDC1-214ENST00000474289 NCOA3Q9Y6Q9 1424 aa23.5■■□□□ 1.35
ECHDC1-214ENST00000474289 DUOX2Q9NRD8 1548 aa23.5■■□□□ 1.35
ECHDC1-214ENST00000474289 DDIT3P35638 169 aa23.49■■□□□ 1.35
ECHDC1-214ENST00000474289 NEUROD2Q15784 382 aa23.48■■□□□ 1.35
ECHDC1-214ENST00000474289 KDM5AP29375 1690 aaKnown RBP23.46■■□□□ 1.35
ECHDC1-214ENST00000474289 SCAPERQ9BY12 1400 aa23.46■■□□□ 1.35
ECHDC1-214ENST00000474289 PDCL3Q9H2J4 239 aa23.45■■□□□ 1.35
ECHDC1-214ENST00000474289 RRP7AQ9Y3A4 280 aaKnown RBP23.45■■□□□ 1.35
ECHDC1-214ENST00000474289 TNPO1Q92973 898 aaKnown RBP23.45■■□□□ 1.34
ECHDC1-214ENST00000474289 CEP152O94986 1710 aa23.44■■□□□ 1.34
ECHDC1-214ENST00000474289 POLR3AO14802 1390 aaPredicted RBP23.43■■□□□ 1.34
ECHDC1-214ENST00000474289 MVPQ14764 893 aaKnown RBP23.43■■□□□ 1.34
ECHDC1-214ENST00000474289 CARD14Q9BXL6 1004 aa23.42■■□□□ 1.34
ECHDC1-214ENST00000474289 KIAA1211Q6ZU35 1233 aa23.42■■□□□ 1.34
ECHDC1-214ENST00000474289 PHF23Q9BUL5 403 aaPredicted RBP23.4■■□□□ 1.34
ECHDC1-214ENST00000474289 SHPRHQ149N8 1683 aa23.4■■□□□ 1.34
ECHDC1-214ENST00000474289 IQSEC2Q5JU85 1478 aa23.4■■□□□ 1.34
ECHDC1-214ENST00000474289 SPHKAPQ2M3C7 1700 aa23.39■■□□□ 1.34
ECHDC1-214ENST00000474289 GBP4Q96PP9 640 aa23.39■■□□□ 1.34
ECHDC1-214ENST00000474289 SMC5Q8IY18 1101 aa23.39■■□□□ 1.33
ECHDC1-214ENST00000474289 TCP11L2Q8N4U5 519 aa23.39■■□□□ 1.33
ECHDC1-214ENST00000474289 SNX21Q969T3 373 aa23.38■■□□□ 1.33
ECHDC1-214ENST00000474289 RUNDC1Q96C34 613 aa23.38■■□□□ 1.33
ECHDC1-214ENST00000474289 RAB3GAP1Q15042 981 aa23.38■■□□□ 1.33
ECHDC1-214ENST00000474289 CIZ1Q9ULV3 898 aaPredicted RBP23.38■■□□□ 1.33
ECHDC1-214ENST00000474289 SKOR2Q2VWA4 1001 aaPredicted RBP23.37■■□□□ 1.33
ECHDC1-214ENST00000474289 WDR63Q8IWG1 891 aa23.37■■□□□ 1.33
ECHDC1-214ENST00000474289 RBM25P49756 843 aaKnown RBP23.37■■□□□ 1.33
ECHDC1-214ENST00000474289 CCDC173Q0VFZ6 552 aa23.36■■□□□ 1.33
ECHDC1-214ENST00000474289 SHROOM2Q13796 1616 aa23.36■■□□□ 1.33
ECHDC1-214ENST00000474289 FTSJ3Q8IY81 847 aaKnown RBP23.35■■□□□ 1.33
ECHDC1-214ENST00000474289 TRPM2O94759 1503 aa23.35■■□□□ 1.33
ECHDC1-214ENST00000474289 CLTCL1P53675 1640 aa23.35■■□□□ 1.33
ECHDC1-214ENST00000474289 PPP1R9BQ96SB3 815 aa23.34■■□□□ 1.33
ECHDC1-214ENST00000474289 TRAPPC8Q9Y2L5 1435 aa23.34■■□□□ 1.33
ECHDC1-214ENST00000474289 ERVK-7P63135 1459 aa23.34■■□□□ 1.33
ECHDC1-214ENST00000474289 ZSCAN30Q86W11 494 aa23.34■■□□□ 1.33
ECHDC1-214ENST00000474289 DZIP1LQ8IYY4 767 aaKnown RBP23.34■■□□□ 1.33
ECHDC1-214ENST00000474289 HDAC1Q13547 482 aaPredicted RBP23.33■■□□□ 1.33
ECHDC1-214ENST00000474289 ZKSCAN2Q63HK3 967 aa23.33■■□□□ 1.33
ECHDC1-214ENST00000474289 HSP90AB1P08238 724 aaKnown RBP23.33■■□□□ 1.33
ECHDC1-214ENST00000474289 KANK1Q14678 1352 aa23.32■■□□□ 1.32
ECHDC1-214ENST00000474289 OFD1O75665 1012 aa23.32■■□□□ 1.32
ECHDC1-214ENST00000474289 NASPP49321 788 aaPredicted RBP23.32■■□□□ 1.32
ECHDC1-214ENST00000474289 PTMSP20962 102 aa23.31■■□□□ 1.32
ECHDC1-214ENST00000474289 CCDC27Q2M243 656 aa23.29■■□□□ 1.32
ECHDC1-214ENST00000474289 PLCH2O75038 1416 aa23.29■■□□□ 1.32
ECHDC1-214ENST00000474289 RIPK4P57078 832 aa23.29■■□□□ 1.32
ECHDC1-214ENST00000474289 CALD1Q05682 793 aaKnown RBP23.29■■□□□ 1.32
ECHDC1-214ENST00000474289 CFAP70Q5T0N1 1121 aa23.29■■□□□ 1.32
ECHDC1-214ENST00000474289 PTPRTO14522 1441 aa23.28■■□□□ 1.32
ECHDC1-214ENST00000474289 TNNT2P45379 298 aaPredicted RBP23.28■■□□□ 1.32
ECHDC1-214ENST00000474289 EFCAB2Q5VUJ9 269 aa23.28■■□□□ 1.32
ECHDC1-214ENST00000474289 ABCC1P33527 1531 aa23.27■■□□□ 1.32
ECHDC1-214ENST00000474289 STAC3Q96MF2 364 aa23.27■■□□□ 1.32
ECHDC1-214ENST00000474289 ERCC6L2Q5T890 1561 aa23.27■■□□□ 1.32
ECHDC1-214ENST00000474289 MSNP26038 577 aaKnown RBP23.27■■□□□ 1.31
ECHDC1-214ENST00000474289 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.27■■□□□ 1.31
ECHDC1-214ENST00000474289 AFAP1Q8N556 730 aa23.26■■□□□ 1.31
ECHDC1-214ENST00000474289 FOXD4L1Q9NU39 408 aa23.26■■□□□ 1.31
ECHDC1-214ENST00000474289 CD2BP2O95400 341 aaKnown RBP23.25■■□□□ 1.31
ECHDC1-214ENST00000474289 TRIM27P14373 513 aa23.25■■□□□ 1.31
ECHDC1-214ENST00000474289 RBM10P98175 930 aaKnown RBP23.25■■□□□ 1.31
ECHDC1-214ENST00000474289 KIF2CQ99661 725 aa23.25■■□□□ 1.31
ECHDC1-214ENST00000474289 MORC1Q86VD1 984 aa23.25■■□□□ 1.31
ECHDC1-214ENST00000474289 ANP32BQ92688 251 aaKnown RBP23.25■■□□□ 1.31
ECHDC1-214ENST00000474289 TERF1P54274 439 aa23.24■■□□□ 1.31
ECHDC1-214ENST00000474289 ITPRIPQ8IWB1 547 aa23.24■■□□□ 1.31
ECHDC1-214ENST00000474289 DDX19BQ9UMR2 479 aa23.24■■□□□ 1.31
ECHDC1-214ENST00000474289 KIAA1210Q9ULL0 1709 aa23.24■■□□□ 1.31
ECHDC1-214ENST00000474289 SPAG9O60271 1321 aaKnown RBP23.24■■□□□ 1.31
ECHDC1-214ENST00000474289 IBTKQ9P2D0 1353 aaPredicted RBP23.24■■□□□ 1.31
ECHDC1-214ENST00000474289 SMC4Q9NTJ3 1288 aa23.23■■□□□ 1.31
ECHDC1-214ENST00000474289 SLC24A1O60721 1099 aa23.22■■□□□ 1.31
ECHDC1-214ENST00000474289 SSFA2P28290 1259 aa23.22■■□□□ 1.31
ECHDC1-214ENST00000474289 KLHL40Q2TBA0 621 aa23.22■■□□□ 1.31
ECHDC1-214ENST00000474289 ADGRF5Q8IZF2 1346 aa23.22■■□□□ 1.31
ECHDC1-214ENST00000474289 NSD3Q9BZ95 1437 aa23.22■■□□□ 1.31
ECHDC1-214ENST00000474289 PRDM4Q9UKN5 801 aa23.21■■□□□ 1.31
ECHDC1-214ENST00000474289 CHD1O14646 1710 aa23.21■■□□□ 1.31
ECHDC1-214ENST00000474289 DDX49Q9Y6V7 483 aaKnown RBP23.21■■□□□ 1.31
ECHDC1-214ENST00000474289 K7ELQ4 463 aaPredicted RBP23.2■■□□□ 1.3
ECHDC1-214ENST00000474289 TSR2Q969E8 191 aaKnown RBP23.2■■□□□ 1.3
ECHDC1-214ENST00000474289 UGGT1Q9NYU2 1555 aa23.2■■□□□ 1.3
ECHDC1-214ENST00000474289 GOLGA6L22H0YM25 854 aa23.2■■□□□ 1.3
ECHDC1-214ENST00000474289 NUCB1Q02818 461 aa23.2■■□□□ 1.3
ECHDC1-214ENST00000474289 LNPKQ9C0E8 428 aa23.2■■□□□ 1.3
ECHDC1-214ENST00000474289 ZNF518AQ6AHZ1 1483 aa23.19■■□□□ 1.3
ECHDC1-214ENST00000474289 ABCA6Q8N139 1617 aa23.19■■□□□ 1.3
ECHDC1-214ENST00000474289 CT47B1P0C2W7 299 aaPredicted RBP23.19■■□□□ 1.3
ECHDC1-214ENST00000474289 ATF7IPQ6VMQ6 1270 aa23.19■■□□□ 1.3
ECHDC1-214ENST00000474289 CLEC17AQ6ZS10 378 aa23.19■■□□□ 1.3
ECHDC1-214ENST00000474289 FAM13BQ9NYF5 915 aa23.19■■□□□ 1.3
ECHDC1-214ENST00000474289 R3HCC1Q9Y3T6 440 aaKnown RBP23.19■■□□□ 1.3
ECHDC1-214ENST00000474289 ZFYVE16Q7Z3T8 1539 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms