RNA–Protein interactions for RNA: ENST00000471887.1

HDAC9-221, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 446 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-221ENST00000471887 THAP11Q96EK4 314 aa11.36□□□□□ -0.59
HDAC9-221ENST00000471887 SPSB2Q99619 263 aa11.36□□□□□ -0.59
HDAC9-221ENST00000471887 C6orf229H3BNL8 230 aa11.35□□□□□ -0.59
HDAC9-221ENST00000471887 TLL1O43897 1013 aa11.35□□□□□ -0.59
HDAC9-221ENST00000471887 BRICD5Q6PL45 260 aa11.35□□□□□ -0.59
HDAC9-221ENST00000471887 RNF19BQ6ZMZ0 732 aa11.35□□□□□ -0.59
HDAC9-221ENST00000471887 PCMTD1Q96MG8 357 aaPredicted RBP11.35□□□□□ -0.59
HDAC9-221ENST00000471887 PCDHB15Q9Y5E8 787 aa11.35□□□□□ -0.59
HDAC9-221ENST00000471887 ADH1BP00325 375 aa11.34□□□□□ -0.59
HDAC9-221ENST00000471887 MTMR2Q13614 643 aa11.34□□□□□ -0.59
HDAC9-221ENST00000471887 CSPP1Q1MSJ5 1256 aa11.34□□□□□ -0.59
HDAC9-221ENST00000471887 IFFO2Q5TF58 517 aa11.34□□□□□ -0.59
HDAC9-221ENST00000471887 PRPF38BQ5VTL8 546 aaKnown RBP11.34□□□□□ -0.59
HDAC9-221ENST00000471887 TMEM132AQ24JP5 1023 aa11.33□□□□□ -0.6
HDAC9-221ENST00000471887 ZBTB3Q9H5J0 574 aa11.33□□□□□ -0.6
HDAC9-221ENST00000471887 SPDYE5A6NIY4 337 aa11.32□□□□□ -0.6
HDAC9-221ENST00000471887 RETREG3Q86VR2 466 aa11.32□□□□□ -0.6
HDAC9-221ENST00000471887 PROCA1Q8NCQ7 364 aaPredicted RBP11.32□□□□□ -0.6
HDAC9-221ENST00000471887 NKX2-3Q8TAU0 364 aa11.32□□□□□ -0.6
HDAC9-221ENST00000471887 SYMPKQ92797 1274 aaKnown RBP11.32□□□□□ -0.6
HDAC9-221ENST00000471887 USB1Q9BQ65 265 aaKnown RBP11.32□□□□□ -0.6
HDAC9-221ENST00000471887 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.31□□□□□ -0.6
HDAC9-221ENST00000471887 NUTM2BA6NNL0 878 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-221ENST00000471887 NUTM2EB1AL46 878 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-221ENST00000471887 HRCP23327 699 aa11.3□□□□□ -0.6
HDAC9-221ENST00000471887 NUTM2DQ5VT03 806 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-221ENST00000471887 NUTM2AQ8IVF1 878 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-221ENST00000471887 LILRB3O75022 631 aa11.29□□□□□ -0.6
HDAC9-221ENST00000471887 QPCTQ16769 361 aa11.29□□□□□ -0.6
HDAC9-221ENST00000471887 MSS51Q4VC12 460 aa11.29□□□□□ -0.6
HDAC9-221ENST00000471887 CABLES1Q8TDN4 633 aa11.29□□□□□ -0.6
HDAC9-221ENST00000471887 SLC6A16Q9GZN6 736 aa11.29□□□□□ -0.6
HDAC9-221ENST00000471887 GGCXP38435 758 aa11.27□□□□□ -0.61
HDAC9-221ENST00000471887 FAM160A2Q8N612 972 aaPredicted RBP11.27□□□□□ -0.61
HDAC9-221ENST00000471887 S1PR4O95977 384 aa11.25□□□□□ -0.61
HDAC9-221ENST00000471887 PRR7Q8TB68 274 aa11.25□□□□□ -0.61
HDAC9-221ENST00000471887 PPP2R2DQ66LE6 453 aa11.24□□□□□ -0.61
HDAC9-221ENST00000471887 RTL5Q5HYW3 569 aaPredicted RBP11.23□□□□□ -0.61
HDAC9-221ENST00000471887 PPP1R18Q6NYC8 613 aa11.23□□□□□ -0.61
HDAC9-221ENST00000471887 PRDM9Q9NQV7 894 aa11.23□□□□□ -0.61
HDAC9-221ENST00000471887 CFAP99D6REC4 459 aa11.22□□□□□ -0.61
HDAC9-221ENST00000471887 A0A0G2JS52 829 aa11.21□□□□□ -0.61
HDAC9-221ENST00000471887 JUNDP17535 347 aa11.21□□□□□ -0.61
HDAC9-221ENST00000471887 MMP16P51512 607 aa11.21□□□□□ -0.61
HDAC9-221ENST00000471887 DESI1Q6ICB0 168 aa11.21□□□□□ -0.61
HDAC9-221ENST00000471887 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.21□□□□□ -0.61
HDAC9-221ENST00000471887 DXOO77932 396 aaKnown RBP11.2□□□□□ -0.62
HDAC9-221ENST00000471887 FBXO31Q5XUX0 539 aaPredicted RBP11.2□□□□□ -0.62
HDAC9-221ENST00000471887 HELBQ8NG08 1087 aaPredicted RBP11.2□□□□□ -0.62
HDAC9-221ENST00000471887 TSC1Q92574 1164 aa11.2□□□□□ -0.62
HDAC9-221ENST00000471887 RFC5P40937 340 aa11.19□□□□□ -0.62
HDAC9-221ENST00000471887 RNF223E7ERA6 249 aa11.18□□□□□ -0.62
HDAC9-221ENST00000471887 PPEF1O14829 653 aaPredicted RBP11.16□□□□□ -0.62
HDAC9-221ENST00000471887 TMEM259Q4ZIN3 620 aa11.16□□□□□ -0.62
HDAC9-221ENST00000471887 ANKLE1Q8NAG6 615 aa11.16□□□□□ -0.62
HDAC9-221ENST00000471887 PTPRNQ16849 979 aa11.15□□□□□ -0.62
HDAC9-221ENST00000471887 FCF1Q9Y324 198 aaKnown RBP11.15□□□□□ -0.62
HDAC9-221ENST00000471887 AP1G2O75843 785 aa11.14□□□□□ -0.63
HDAC9-221ENST00000471887 LYPD8Q6UX82 237 aa11.14□□□□□ -0.63
HDAC9-221ENST00000471887 NUDT12Q9BQG2 462 aa11.14□□□□□ -0.63
HDAC9-221ENST00000471887 CCNYL3P0C7X3 344 aa11.12□□□□□ -0.63
HDAC9-221ENST00000471887 CTDSPL2Q05D32 466 aa11.12□□□□□ -0.63
HDAC9-221ENST00000471887 CCDC24Q8N4L8 307 aa11.12□□□□□ -0.63
HDAC9-221ENST00000471887 PER1O15534 1290 aaPredicted RBP11.1□□□□□ -0.63
HDAC9-221ENST00000471887 BANK1Q8NDB2 785 aa11.09□□□□□ -0.63
HDAC9-221ENST00000471887 USP17L8P0C7I0 530 aa11.08□□□□□ -0.64
HDAC9-221ENST00000471887 EVA1BQ9NVM1 165 aa11.08□□□□□ -0.64
HDAC9-221ENST00000471887 ZBTB24O43167 697 aaPredicted RBP11.07□□□□□ -0.64
HDAC9-221ENST00000471887 CTHP32929 405 aa11.07□□□□□ -0.64
HDAC9-221ENST00000471887 PLA2G2CQ5R387 149 aa11.07□□□□□ -0.64
HDAC9-221ENST00000471887 KCNH2Q12809 1159 aa11.06□□□□□ -0.64
HDAC9-221ENST00000471887 LRRN4Q8WUT4 740 aa11.06□□□□□ -0.64
HDAC9-221ENST00000471887 F12P00748 615 aaPredicted RBP11.05□□□□□ -0.64
HDAC9-221ENST00000471887 RGS20O76081 388 aa11.04□□□□□ -0.64
HDAC9-221ENST00000471887 RPIAP49247 311 aa11.04□□□□□ -0.64
HDAC9-221ENST00000471887 SLC19A1P41440 591 aa11.03□□□□□ -0.64
HDAC9-221ENST00000471887 PRKD2Q9BZL6 878 aa11.03□□□□□ -0.64
HDAC9-221ENST00000471887 MAP10Q9P2G4 905 aa11.03□□□□□ -0.64
HDAC9-221ENST00000471887 PTCRAQ6ISU1 281 aaPredicted RBP11.02□□□□□ -0.65
HDAC9-221ENST00000471887 UNC93B1Q9H1C4 597 aa11.02□□□□□ -0.65
HDAC9-221ENST00000471887 V9GY48 417 aaPredicted RBP11.02□□□□□ -0.65
HDAC9-221ENST00000471887 LIAT1Q6ZQX7 453 aa11.01□□□□□ -0.65
HDAC9-221ENST00000471887 APBB1O00213 710 aa11□□□□□ -0.65
HDAC9-221ENST00000471887 SOCS7O14512 581 aa11□□□□□ -0.65
HDAC9-221ENST00000471887 CD2BP2O95400 341 aaKnown RBP11□□□□□ -0.65
HDAC9-221ENST00000471887 EMID1Q96A84 441 aaPredicted RBP11□□□□□ -0.65
HDAC9-221ENST00000471887 HMX1Q9NP08 348 aaPredicted RBP11□□□□□ -0.65
HDAC9-221ENST00000471887 TRIM32Q13049 653 aa10.99□□□□□ -0.65
HDAC9-221ENST00000471887 NR6A1Q15406 480 aa10.99□□□□□ -0.65
HDAC9-221ENST00000471887 SNRKQ9NRH2 765 aa10.99□□□□□ -0.65
HDAC9-221ENST00000471887 SPRYD7Q5W111 196 aa10.98□□□□□ -0.65
HDAC9-221ENST00000471887 MTMR14Q8NCE2 650 aa10.98□□□□□ -0.65
HDAC9-221ENST00000471887 ARMC2Q8NEN0 867 aa10.98□□□□□ -0.65
HDAC9-221ENST00000471887 FLIIQ13045 1269 aa10.97□□□□□ -0.65
HDAC9-221ENST00000471887 MCM6Q14566 821 aa10.96□□□□□ -0.65
HDAC9-221ENST00000471887 PNMA1Q8ND90 353 aa10.96□□□□□ -0.65
HDAC9-221ENST00000471887 EPS8L1Q8TE68 723 aa10.95□□□□□ -0.66
HDAC9-221ENST00000471887 GJD4Q96KN9 370 aaPredicted RBP10.95□□□□□ -0.66
HDAC9-221ENST00000471887 TRIM34Q9BYJ4 488 aa10.95□□□□□ -0.66
HDAC9-221ENST00000471887 NBPF14Q5TI25 921 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms