RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 PNPLA6Q8IY17 1366 aa12.03□□□□□ -0.48
USP48-207ENST00000471752 ESCO1Q5FWF5 840 aa12.02□□□□□ -0.49
USP48-207ENST00000471752 PTCH1Q13635 1447 aa12.02□□□□□ -0.49
USP48-207ENST00000471752 PPLO60437 1756 aa12.01□□□□□ -0.49
USP48-207ENST00000471752 FOXO3O43524 673 aa12.01□□□□□ -0.49
USP48-207ENST00000471752 SAFB2Q14151 953 aaKnown RBP eCLIP12.01□□□□□ -0.49
USP48-207ENST00000471752 C8orf37Q96NL8 207 aa12.01□□□□□ -0.49
USP48-207ENST00000471752 C14orf93Q9H972 538 aaKnown RBP12.01□□□□□ -0.49
USP48-207ENST00000471752 SOS2Q07890 1332 aaPredicted RBP12.01□□□□□ -0.49
USP48-207ENST00000471752 LRPPRCP42704 1394 aaKnown RBP12□□□□□ -0.49
USP48-207ENST00000471752 QTRT2Q9H974 415 aaKnown RBP11.99□□□□□ -0.49
USP48-207ENST00000471752 KDM2AQ9Y2K7 1162 aa11.99□□□□□ -0.49
USP48-207ENST00000471752 PIK3C2GO75747 1445 aa11.98□□□□□ -0.49
USP48-207ENST00000471752 ABCC11Q96J66 1382 aa11.98□□□□□ -0.49
USP48-207ENST00000471752 ANKRD30BQ9BXX2 1392 aa11.98□□□□□ -0.49
USP48-207ENST00000471752 RXRBP28702 533 aa11.98□□□□□ -0.49
USP48-207ENST00000471752 ZNF772Q68DY9 489 aaPredicted RBP11.98□□□□□ -0.49
USP48-207ENST00000471752 SRCAPQ6ZRS2 3230 aa11.98□□□□□ -0.49
USP48-207ENST00000471752 SHPRHQ149N8 1683 aa11.97□□□□□ -0.49
USP48-207ENST00000471752 NHSL1Q5SYE7 1610 aa11.97□□□□□ -0.49
USP48-207ENST00000471752 PRAG1Q86YV5 1406 aa11.97□□□□□ -0.49
USP48-207ENST00000471752 YTHDC2Q9H6S0 1430 aaKnown RBP11.97□□□□□ -0.49
USP48-207ENST00000471752 PLEKHG5O94827 1062 aa11.97□□□□□ -0.49
USP48-207ENST00000471752 UPF1Q92900 1129 aaKnown RBP eCLIP11.97□□□□□ -0.49
USP48-207ENST00000471752 NGLY1Q96IV0 654 aa11.96□□□□□ -0.49
USP48-207ENST00000471752 PRAM1Q96QH2 718 aa11.96□□□□□ -0.49
USP48-207ENST00000471752 TECPR2O15040 1411 aa11.95□□□□□ -0.5
USP48-207ENST00000471752 HIRIP3Q9BW71 556 aaPredicted RBP11.95□□□□□ -0.5
USP48-207ENST00000471752 CABLES1Q8TDN4 633 aa11.94□□□□□ -0.5
USP48-207ENST00000471752 DCAF11Q8TEB1 546 aa11.94□□□□□ -0.5
USP48-207ENST00000471752 TRAK1Q9UPV9 953 aa11.94□□□□□ -0.5
USP48-207ENST00000471752 NRXN1Q9ULB1 1477 aa11.94□□□□□ -0.5
USP48-207ENST00000471752 DHX57Q6P158 1386 aaKnown RBP11.93□□□□□ -0.5
USP48-207ENST00000471752 CNKSR2Q8WXI2 1034 aa11.93□□□□□ -0.5
USP48-207ENST00000471752 IFT172Q9UG01 1749 aa11.93□□□□□ -0.5
USP48-207ENST00000471752 PXDNQ92626 1479 aa11.93□□□□□ -0.5
USP48-207ENST00000471752 KRT28Q7Z3Y7 464 aa11.92□□□□□ -0.5
USP48-207ENST00000471752 PMFBP1Q8TBY8 1022 aa11.92□□□□□ -0.5
USP48-207ENST00000471752 SIRT1Q96EB6 747 aa11.92□□□□□ -0.5
USP48-207ENST00000471752 FNBP4Q8N3X1 1017 aaPredicted RBP11.91□□□□□ -0.5
USP48-207ENST00000471752 USP21Q9UK80 565 aa11.91□□□□□ -0.5
USP48-207ENST00000471752 NPHP3Q7Z494 1330 aa11.9□□□□□ -0.5
USP48-207ENST00000471752 MINK1Q8N4C8 1332 aaPredicted RBP11.9□□□□□ -0.5
USP48-207ENST00000471752 RGS12O14924 1447 aa11.9□□□□□ -0.5
USP48-207ENST00000471752 HOXD11P31277 338 aaPredicted RBP11.9□□□□□ -0.5
USP48-207ENST00000471752 RBM6P78332 1123 aaKnown RBP11.9□□□□□ -0.5
USP48-207ENST00000471752 PHF8Q9UPP1 1060 aa11.9□□□□□ -0.5
USP48-207ENST00000471752 LAMC1P11047 1609 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 MYOM2P54296 1465 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 SPATA31A3Q5VYP0 1347 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 PRR36Q9H6K5 1346 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 CDC42BPGQ6DT37 1551 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 EP400Q96L91 3159 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 DCAF8L1A6NGE4 600 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 POGKQ9P215 609 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 BCL9LQ86UU0 1499 aa11.89□□□□□ -0.51
USP48-207ENST00000471752 NBPF1Q3BBV0 1214 aa11.88□□□□□ -0.51
USP48-207ENST00000471752 ADGRB1O14514 1584 aa11.88□□□□□ -0.51
USP48-207ENST00000471752 HRCP23327 699 aa11.87□□□□□ -0.51
USP48-207ENST00000471752 LMOD2Q6P5Q4 547 aa11.86□□□□□ -0.51
USP48-207ENST00000471752 ATRNO75882 1429 aa11.86□□□□□ -0.51
USP48-207ENST00000471752 SIN3AQ96ST3 1273 aa11.85□□□□□ -0.51
USP48-207ENST00000471752 FMN2Q9NZ56 1722 aa11.84□□□□□ -0.51
USP48-207ENST00000471752 FAM83GA6ND36 823 aa11.84□□□□□ -0.51
USP48-207ENST00000471752 PSME1Q06323 249 aa11.84□□□□□ -0.51
USP48-207ENST00000471752 TRPC5Q9UL62 973 aaPredicted RBP11.84□□□□□ -0.51
USP48-207ENST00000471752 RGPD8O14715 1765 aaPredicted RBP11.84□□□□□ -0.51
USP48-207ENST00000471752 WASLO00401 505 aaPredicted RBP11.83□□□□□ -0.52
USP48-207ENST00000471752 KNDC1Q76NI1 1749 aa11.83□□□□□ -0.52
USP48-207ENST00000471752 CDK12Q9NYV4 1490 aaPredicted RBP11.83□□□□□ -0.52
USP48-207ENST00000471752 USP32Q8NFA0 1604 aa11.82□□□□□ -0.52
USP48-207ENST00000471752 GJD4Q96KN9 370 aaPredicted RBP11.82□□□□□ -0.52
USP48-207ENST00000471752 RNF216Q9NWF9 866 aaPredicted RBP11.82□□□□□ -0.52
USP48-207ENST00000471752 ACIN1Q9UKV3 1341 aaKnown RBP11.82□□□□□ -0.52
USP48-207ENST00000471752 COL22A1Q8NFW1 1626 aaPredicted RBP11.82□□□□□ -0.52
USP48-207ENST00000471752 UNC5CLQ8IV45 518 aa11.81□□□□□ -0.52
USP48-207ENST00000471752 NUTM2GQ5VZR2 741 aa11.8□□□□□ -0.52
USP48-207ENST00000471752 NUDT16Q96DE0 195 aaKnown RBP11.8□□□□□ -0.52
USP48-207ENST00000471752 CDK19Q9BWU1 502 aa11.8□□□□□ -0.52
USP48-207ENST00000471752 SLIT2O94813 1529 aa11.8□□□□□ -0.52
USP48-207ENST00000471752 DLC1Q96QB1 1528 aa11.8□□□□□ -0.52
USP48-207ENST00000471752 TNS3Q68CZ2 1445 aa11.79□□□□□ -0.52
USP48-207ENST00000471752 CACNB1Q02641 598 aaPredicted RBP11.79□□□□□ -0.52
USP48-207ENST00000471752 L3MBTL2Q969R5 705 aa11.79□□□□□ -0.52
USP48-207ENST00000471752 RALGAPBQ86X10 1494 aa11.78□□□□□ -0.52
USP48-207ENST00000471752 SBNO1A3KN83 1393 aa11.78□□□□□ -0.52
USP48-207ENST00000471752 PAK3O75914 559 aaPredicted RBP11.77□□□□□ -0.53
USP48-207ENST00000471752 NEUROD1Q13562 356 aa11.77□□□□□ -0.53
USP48-207ENST00000471752 SEPT12Q8IYM1 358 aa11.77□□□□□ -0.53
USP48-207ENST00000471752 NGDNQ8NEJ9 315 aaKnown RBP11.77□□□□□ -0.53
USP48-207ENST00000471752 GLI3P10071 1580 aa11.76□□□□□ -0.53
USP48-207ENST00000471752 HAP1P54257 671 aaPredicted RBP11.76□□□□□ -0.53
USP48-207ENST00000471752 FAM182BQ5T319 152 aa11.76□□□□□ -0.53
USP48-207ENST00000471752 ANKARQ7Z5J8 1434 aa11.76□□□□□ -0.53
USP48-207ENST00000471752 CHRNA2Q15822 529 aa11.75□□□□□ -0.53
USP48-207ENST00000471752 VPS72Q15906 364 aa11.75□□□□□ -0.53
USP48-207ENST00000471752 NBPF8Q3BBV2 869 aa11.75□□□□□ -0.53
USP48-207ENST00000471752 CABP2Q9NPB3 220 aa11.75□□□□□ -0.53
USP48-207ENST00000471752 BTG4Q9NY30 223 aa11.75□□□□□ -0.53
USP48-207ENST00000471752 DEFB132Q7Z7B7 95 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms