RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 SHPRHQ149N8 1683 aa13.92□□□□□ -0.18
CPSF4-211ENST00000471455 NUTM2DQ5VT03 806 aaPredicted RBP13.92□□□□□ -0.18
CPSF4-211ENST00000471455 AMOTL2Q9Y2J4 779 aa13.91□□□□□ -0.18
CPSF4-211ENST00000471455 SETBP1Q9Y6X0 1596 aa13.9□□□□□ -0.18
CPSF4-211ENST00000471455 SPHKAPQ2M3C7 1700 aa13.9□□□□□ -0.18
CPSF4-211ENST00000471455 EVX2Q03828 476 aa13.89□□□□□ -0.19
CPSF4-211ENST00000471455 LRP6O75581 1613 aa13.89□□□□□ -0.19
CPSF4-211ENST00000471455 SETD1AO15047 1707 aaKnown RBP13.88□□□□□ -0.19
CPSF4-211ENST00000471455 XRN1Q8IZH2 1706 aaKnown RBP13.88□□□□□ -0.19
CPSF4-211ENST00000471455 ITGAEP38570 1179 aa13.88□□□□□ -0.19
CPSF4-211ENST00000471455 ZNF326Q5BKZ1 582 aaKnown RBP13.88□□□□□ -0.19
CPSF4-211ENST00000471455 ASXL1Q8IXJ9 1541 aa13.87□□□□□ -0.19
CPSF4-211ENST00000471455 C19orf67A6NJJ6 358 aa13.87□□□□□ -0.19
CPSF4-211ENST00000471455 BRINP3Q76B58 766 aa13.87□□□□□ -0.19
CPSF4-211ENST00000471455 PTPRUQ92729 1446 aa13.87□□□□□ -0.19
CPSF4-211ENST00000471455 NRXN3Q9Y4C0 1643 aa13.86□□□□□ -0.19
CPSF4-211ENST00000471455 SETD5Q9C0A6 1442 aa13.85□□□□□ -0.19
CPSF4-211ENST00000471455 MST1RQ04912 1400 aa13.84□□□□□ -0.19
CPSF4-211ENST00000471455 ADGRL3Q9HAR2 1447 aa13.84□□□□□ -0.19
CPSF4-211ENST00000471455 CDK12Q9NYV4 1490 aaPredicted RBP13.84□□□□□ -0.19
CPSF4-211ENST00000471455 HAX1O00165 279 aa13.83□□□□□ -0.2
CPSF4-211ENST00000471455 RXRBP28702 533 aa13.83□□□□□ -0.2
CPSF4-211ENST00000471455 LRRC59Q96AG4 307 aaKnown RBP13.83□□□□□ -0.2
CPSF4-211ENST00000471455 NHSL1Q5SYE7 1610 aa13.82□□□□□ -0.2
CPSF4-211ENST00000471455 NUTM2BA6NNL0 878 aaPredicted RBP13.82□□□□□ -0.2
CPSF4-211ENST00000471455 NUTM2EB1AL46 878 aaPredicted RBP13.82□□□□□ -0.2
CPSF4-211ENST00000471455 NUTM2AQ8IVF1 878 aaPredicted RBP13.82□□□□□ -0.2
CPSF4-211ENST00000471455 TRIM52Q96A61 297 aa13.82□□□□□ -0.2
CPSF4-211ENST00000471455 NEXMIFQ5QGS0 1516 aa13.81□□□□□ -0.2
CPSF4-211ENST00000471455 METP08581 1390 aa13.81□□□□□ -0.2
CPSF4-211ENST00000471455 CLTCL1P53675 1640 aa13.8□□□□□ -0.2
CPSF4-211ENST00000471455 KIF1BO60333 1816 aa13.8□□□□□ -0.2
CPSF4-211ENST00000471455 PTCH1Q13635 1447 aa13.8□□□□□ -0.2
CPSF4-211ENST00000471455 AFF2P51816 1311 aa13.79□□□□□ -0.2
CPSF4-211ENST00000471455 VGFO15240 615 aaPredicted RBP13.78□□□□□ -0.2
CPSF4-211ENST00000471455 UPF1Q92900 1129 aaKnown RBP eCLIP13.78□□□□□ -0.2
CPSF4-211ENST00000471455 FBXO3Q9UK99 471 aa13.78□□□□□ -0.2
CPSF4-211ENST00000471455 NALCNQ8IZF0 1738 aa13.78□□□□□ -0.2
CPSF4-211ENST00000471455 PNPLA6Q8IY17 1366 aa13.77□□□□□ -0.21
CPSF4-211ENST00000471455 RPGRIP1LQ68CZ1 1315 aa13.76□□□□□ -0.21
CPSF4-211ENST00000471455 C8orf37Q96NL8 207 aa13.76□□□□□ -0.21
CPSF4-211ENST00000471455 C1orf167Q5SNV9 1468 aa13.75□□□□□ -0.21
CPSF4-211ENST00000471455 PRAG1Q86YV5 1406 aa13.75□□□□□ -0.21
CPSF4-211ENST00000471455 RRBP1Q9P2E9 1410 aaKnown RBP13.75□□□□□ -0.21
CPSF4-211ENST00000471455 RBM6P78332 1123 aaKnown RBP13.75□□□□□ -0.21
CPSF4-211ENST00000471455 MIER1Q8N108 512 aa13.75□□□□□ -0.21
CPSF4-211ENST00000471455 NAIPQ13075 1403 aa13.74□□□□□ -0.21
CPSF4-211ENST00000471455 VASPP50552 380 aaPredicted RBP13.74□□□□□ -0.21
CPSF4-211ENST00000471455 LAMC1P11047 1609 aa13.74□□□□□ -0.21
CPSF4-211ENST00000471455 HFM1A2PYH4 1435 aa13.73□□□□□ -0.21
CPSF4-211ENST00000471455 SP7Q8TDD2 431 aaPredicted RBP13.73□□□□□ -0.21
CPSF4-211ENST00000471455 NGLY1Q96IV0 654 aa13.73□□□□□ -0.21
CPSF4-211ENST00000471455 PPARGC1BQ86YN6 1023 aaKnown RBP13.72□□□□□ -0.21
CPSF4-211ENST00000471455 QTRT2Q9H974 415 aaKnown RBP13.72□□□□□ -0.21
CPSF4-211ENST00000471455 RGS12O14924 1447 aa13.72□□□□□ -0.21
CPSF4-211ENST00000471455 CD44P16070 742 aaKnown RBP13.71□□□□□ -0.21
CPSF4-211ENST00000471455 ROBO2Q9HCK4 1378 aa13.71□□□□□ -0.22
CPSF4-211ENST00000471455 SOS2Q07890 1332 aaPredicted RBP13.7□□□□□ -0.22
CPSF4-211ENST00000471455 ADAMTS2O95450 1211 aa13.7□□□□□ -0.22
CPSF4-211ENST00000471455 PLCD3Q8N3E9 789 aa13.7□□□□□ -0.22
CPSF4-211ENST00000471455 DDX17Q92841 729 aaKnown RBP13.7□□□□□ -0.22
CPSF4-211ENST00000471455 CDC42BPGQ6DT37 1551 aa13.69□□□□□ -0.22
CPSF4-211ENST00000471455 ATAD2Q6PL18 1390 aa13.69□□□□□ -0.22
CPSF4-211ENST00000471455 PPLO60437 1756 aa13.68□□□□□ -0.22
CPSF4-211ENST00000471455 NPHP3Q7Z494 1330 aa13.68□□□□□ -0.22
CPSF4-211ENST00000471455 TRPC5Q9UL62 973 aaPredicted RBP13.68□□□□□ -0.22
CPSF4-211ENST00000471455 USP21Q9UK80 565 aa13.67□□□□□ -0.22
CPSF4-211ENST00000471455 LRPPRCP42704 1394 aaKnown RBP13.67□□□□□ -0.22
CPSF4-211ENST00000471455 COL22A1Q8NFW1 1626 aaPredicted RBP13.67□□□□□ -0.22
CPSF4-211ENST00000471455 ORAI2Q96SN7 254 aa13.66□□□□□ -0.22
CPSF4-211ENST00000471455 CCDC144AA2RUR9 1427 aa13.65□□□□□ -0.22
CPSF4-211ENST00000471455 ANKRD30BQ9BXX2 1392 aa13.64□□□□□ -0.23
CPSF4-211ENST00000471455 ESCO1Q5FWF5 840 aa13.64□□□□□ -0.23
CPSF4-211ENST00000471455 FNBP4Q8N3X1 1017 aaPredicted RBP13.64□□□□□ -0.23
CPSF4-211ENST00000471455 MYOM2P54296 1465 aa13.63□□□□□ -0.23
CPSF4-211ENST00000471455 TECPR2O15040 1411 aa13.63□□□□□ -0.23
CPSF4-211ENST00000471455 ATRNO75882 1429 aa13.62□□□□□ -0.23
CPSF4-211ENST00000471455 PXDNQ92626 1479 aa13.61□□□□□ -0.23
CPSF4-211ENST00000471455 ACIN1Q9UKV3 1341 aaKnown RBP13.61□□□□□ -0.23
CPSF4-211ENST00000471455 KNDC1Q76NI1 1749 aa13.6□□□□□ -0.23
CPSF4-211ENST00000471455 KIF1AQ12756 1690 aa13.59□□□□□ -0.23
CPSF4-211ENST00000471455 NUBP1P53384 320 aa13.59□□□□□ -0.23
CPSF4-211ENST00000471455 RASEFQ8IZ41 740 aa13.59□□□□□ -0.23
CPSF4-211ENST00000471455 MARF1Q9Y4F3 1742 aaKnown RBP13.59□□□□□ -0.23
CPSF4-211ENST00000471455 ABCC11Q96J66 1382 aa13.58□□□□□ -0.23
CPSF4-211ENST00000471455 SPATA31E1Q6ZUB1 1445 aa13.58□□□□□ -0.24
CPSF4-211ENST00000471455 FOXO3O43524 673 aa13.58□□□□□ -0.24
CPSF4-211ENST00000471455 PLEKHG5O94827 1062 aa13.58□□□□□ -0.24
CPSF4-211ENST00000471455 CCDC125Q86Z20 511 aa13.58□□□□□ -0.24
CPSF4-211ENST00000471455 ZNF579Q8NAF0 562 aaKnown RBP13.58□□□□□ -0.24
CPSF4-211ENST00000471455 STK26Q9P289 416 aa13.58□□□□□ -0.24
CPSF4-211ENST00000471455 ADGRF5Q8IZF2 1346 aa13.58□□□□□ -0.24
CPSF4-211ENST00000471455 IFT172Q9UG01 1749 aa13.57□□□□□ -0.24
CPSF4-211ENST00000471455 ZRANB1Q9UGI0 708 aa13.57□□□□□ -0.24
CPSF4-211ENST00000471455 PIK3C2GO75747 1445 aa13.56□□□□□ -0.24
CPSF4-211ENST00000471455 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.56□□□□□ -0.24
CPSF4-211ENST00000471455 RGL3Q3MIN7 710 aa13.56□□□□□ -0.24
CPSF4-211ENST00000471455 IFNLR1Q8IU57 520 aaPredicted RBP13.56□□□□□ -0.24
CPSF4-211ENST00000471455 FMN2Q9NZ56 1722 aa13.56□□□□□ -0.24
CPSF4-211ENST00000471455 BCL9LQ86UU0 1499 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms