RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 NUTM1Q86Y26 1132 aa8.81□□□□□ -1
VPS13A-210ENST00000471439 PRKD2Q9BZL6 878 aa8.81□□□□□ -1
VPS13A-210ENST00000471439 GPBP1L1Q9HC44 474 aaPredicted RBP8.81□□□□□ -1
VPS13A-210ENST00000471439 PCDHGC3Q9UN70 934 aa8.81□□□□□ -1
VPS13A-210ENST00000471439 MOXD2PA6NHM9 499 aa8.8□□□□□ -1
VPS13A-210ENST00000471439 FMNL1O95466 1100 aaPredicted RBP8.8□□□□□ -1
VPS13A-210ENST00000471439 GGCXP38435 758 aa8.79□□□□□ -1
VPS13A-210ENST00000471439 GRIPAP1Q4V328 841 aa8.79□□□□□ -1
VPS13A-210ENST00000471439 USP46P62068 366 aa8.78□□□□□ -1
VPS13A-210ENST00000471439 TBC1D2Q9BYX2 928 aa8.77□□□□□ -1.01
VPS13A-210ENST00000471439 FDX1P10109 184 aa8.76□□□□□ -1.01
VPS13A-210ENST00000471439 ANKLE1Q8NAG6 615 aa8.76□□□□□ -1.01
VPS13A-210ENST00000471439 FCF1Q9Y324 198 aaKnown RBP8.76□□□□□ -1.01
VPS13A-210ENST00000471439 SALL2Q9Y467 1007 aaPredicted RBP8.76□□□□□ -1.01
VPS13A-210ENST00000471439 LIAT1Q6ZQX7 453 aa8.75□□□□□ -1.01
VPS13A-210ENST00000471439 SHROOM4Q9ULL8 1493 aa8.75□□□□□ -1.01
VPS13A-210ENST00000471439 Q3C1V9 767 aa8.74□□□□□ -1.01
VPS13A-210ENST00000471439 MSS51Q4VC12 460 aa8.74□□□□□ -1.01
VPS13A-210ENST00000471439 USB1Q9BQ65 265 aaKnown RBP8.74□□□□□ -1.01
VPS13A-210ENST00000471439 IRX2Q9BZI1 471 aaPredicted RBP8.73□□□□□ -1.01
VPS13A-210ENST00000471439 RIMBP3CA6NJZ7 1639 aa8.72□□□□□ -1.01
VPS13A-210ENST00000471439 RIMBP3BA6NNM3 1639 aa8.72□□□□□ -1.01
VPS13A-210ENST00000471439 RIMBP3Q9UFD9 1639 aa8.72□□□□□ -1.01
VPS13A-210ENST00000471439 RSBN1LQ6PCB5 846 aaPredicted RBP8.72□□□□□ -1.01
VPS13A-210ENST00000471439 KDM4CQ9H3R0 1056 aa8.72□□□□□ -1.01
VPS13A-210ENST00000471439 PCDHB15Q9Y5E8 787 aa8.72□□□□□ -1.01
VPS13A-210ENST00000471439 V9GY48 417 aaPredicted RBP8.72□□□□□ -1.01
VPS13A-210ENST00000471439 C6orf229H3BNL8 230 aa8.71□□□□□ -1.02
VPS13A-210ENST00000471439 SLC19A1P41440 591 aa8.71□□□□□ -1.02
VPS13A-210ENST00000471439 CSPP1Q1MSJ5 1256 aa8.71□□□□□ -1.02
VPS13A-210ENST00000471439 MYSM1Q5VVJ2 828 aa8.71□□□□□ -1.02
VPS13A-210ENST00000471439 LIMD1Q9UGP4 676 aa8.71□□□□□ -1.02
VPS13A-210ENST00000471439 MMP16P51512 607 aa8.7□□□□□ -1.02
VPS13A-210ENST00000471439 TRIM67Q6ZTA4 783 aa8.7□□□□□ -1.02
VPS13A-210ENST00000471439 FAM117AQ9C073 453 aa8.7□□□□□ -1.02
VPS13A-210ENST00000471439 DXOO77932 396 aaKnown RBP8.69□□□□□ -1.02
VPS13A-210ENST00000471439 SPRYD7Q5W111 196 aa8.69□□□□□ -1.02
VPS13A-210ENST00000471439 CABLES1Q8TDN4 633 aa8.69□□□□□ -1.02
VPS13A-210ENST00000471439 RIC3Q7Z5B4 369 aa8.68□□□□□ -1.02
VPS13A-210ENST00000471439 RETREG3Q86VR2 466 aa8.68□□□□□ -1.02
VPS13A-210ENST00000471439 PLEKHG3A1L390 1219 aa8.67□□□□□ -1.02
VPS13A-210ENST00000471439 SOCS7O14512 581 aa8.67□□□□□ -1.02
VPS13A-210ENST00000471439 SPTLC1O15269 473 aa8.67□□□□□ -1.02
VPS13A-210ENST00000471439 QPCTQ16769 361 aa8.67□□□□□ -1.02
VPS13A-210ENST00000471439 ZNF697Q5TEC3 545 aa8.67□□□□□ -1.02
VPS13A-210ENST00000471439 LMTK3Q96Q04 1460 aa8.66□□□□□ -1.02
VPS13A-210ENST00000471439 JUNDP17535 347 aa8.66□□□□□ -1.02
VPS13A-210ENST00000471439 MTMR2Q13614 643 aa8.66□□□□□ -1.02
VPS13A-210ENST00000471439 THOC2Q8NI27 1593 aaKnown RBP8.65□□□□□ -1.02
VPS13A-210ENST00000471439 CFAP99D6REC4 459 aa8.65□□□□□ -1.02
VPS13A-210ENST00000471439 HRCP23327 699 aa8.65□□□□□ -1.02
VPS13A-210ENST00000471439 FBXO31Q5XUX0 539 aaPredicted RBP8.65□□□□□ -1.02
VPS13A-210ENST00000471439 CCDC24Q8N4L8 307 aa8.65□□□□□ -1.02
VPS13A-210ENST00000471439 PRR7Q8TB68 274 aa8.65□□□□□ -1.02
VPS13A-210ENST00000471439 POLR3EQ9NVU0 708 aa8.65□□□□□ -1.02
VPS13A-210ENST00000471439 TNFRSF10AO00220 468 aa8.64□□□□□ -1.03
VPS13A-210ENST00000471439 GFRA3O60609 400 aa8.64□□□□□ -1.03
VPS13A-210ENST00000471439 ZNF598Q86UK7 904 aaKnown RBP8.64□□□□□ -1.03
VPS13A-210ENST00000471439 BAZ1AQ9NRL2 1556 aaPredicted RBP8.64□□□□□ -1.03
VPS13A-210ENST00000471439 LCE2BO14633 110 aa8.63□□□□□ -1.03
VPS13A-210ENST00000471439 CLK2P49760 499 aaKnown RBP8.63□□□□□ -1.03
VPS13A-210ENST00000471439 BRPF1P55201 1214 aaPredicted RBP8.63□□□□□ -1.03
VPS13A-210ENST00000471439 NEUROD2Q15784 382 aa8.63□□□□□ -1.03
VPS13A-210ENST00000471439 PDZRN3Q9UPQ7 1066 aa8.63□□□□□ -1.03
VPS13A-210ENST00000471439 LAPTM4AQ15012 233 aa8.62□□□□□ -1.03
VPS13A-210ENST00000471439 DIXDC1Q155Q3 683 aa8.62□□□□□ -1.03
VPS13A-210ENST00000471439 PTCRAQ6ISU1 281 aaPredicted RBP8.62□□□□□ -1.03
VPS13A-210ENST00000471439 GJA5P36382 358 aa8.61□□□□□ -1.03
VPS13A-210ENST00000471439 RTL5Q5HYW3 569 aaPredicted RBP8.61□□□□□ -1.03
VPS13A-210ENST00000471439 NUDT12Q9BQG2 462 aa8.61□□□□□ -1.03
VPS13A-210ENST00000471439 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
VPS13A-210ENST00000471439 PKD2L1Q9P0L9 805 aa8.61□□□□□ -1.03
VPS13A-210ENST00000471439 GDF9O60383 454 aa8.6□□□□□ -1.03
VPS13A-210ENST00000471439 RPIAP49247 311 aa8.6□□□□□ -1.03
VPS13A-210ENST00000471439 FOXC1Q12948 553 aa8.6□□□□□ -1.03
VPS13A-210ENST00000471439 TRIM32Q13049 653 aa8.6□□□□□ -1.03
VPS13A-210ENST00000471439 Q6ZNB5 142 aa8.6□□□□□ -1.03
VPS13A-210ENST00000471439 PROCA1Q8NCQ7 364 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-210ENST00000471439 PER1O15534 1290 aaPredicted RBP8.59□□□□□ -1.03
VPS13A-210ENST00000471439 LILRB3O75022 631 aa8.59□□□□□ -1.03
VPS13A-210ENST00000471439 ILDR2Q71H61 639 aa8.59□□□□□ -1.03
VPS13A-210ENST00000471439 TSC1Q92574 1164 aa8.59□□□□□ -1.03
VPS13A-210ENST00000471439 NRG2O14511 850 aaPredicted RBP8.58□□□□□ -1.04
VPS13A-210ENST00000471439 CCNYL3P0C7X3 344 aa8.58□□□□□ -1.04
VPS13A-210ENST00000471439 CYB5RLQ6IPT4 315 aa8.58□□□□□ -1.04
VPS13A-210ENST00000471439 NUTM2BA6NNL0 878 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-210ENST00000471439 NUTM2EB1AL46 878 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-210ENST00000471439 ZBTB24O43167 697 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-210ENST00000471439 SKOR1P84550 965 aa8.57□□□□□ -1.04
VPS13A-210ENST00000471439 SH3D19Q5HYK7 790 aa8.57□□□□□ -1.04
VPS13A-210ENST00000471439 NUTM2DQ5VT03 806 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-210ENST00000471439 PRPF38BQ5VTL8 546 aaKnown RBP8.57□□□□□ -1.04
VPS13A-210ENST00000471439 NUTM2AQ8IVF1 878 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-210ENST00000471439 DDRGK1Q96HY6 314 aa8.57□□□□□ -1.04
VPS13A-210ENST00000471439 ARHGEF11O15085 1522 aa8.56□□□□□ -1.04
VPS13A-210ENST00000471439 SPDYE5A6NIY4 337 aa8.56□□□□□ -1.04
VPS13A-210ENST00000471439 PTPRNQ16849 979 aa8.56□□□□□ -1.04
VPS13A-210ENST00000471439 IL27Q8NEV9 243 aa8.56□□□□□ -1.04
VPS13A-210ENST00000471439 MAP10Q9P2G4 905 aa8.56□□□□□ -1.04
VPS13A-210ENST00000471439 NESP48681 1621 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms