RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 USP47Q96K76 1375 aa14.94□□□□□ -0.02
SMC1A-206ENST00000470241 XIRP1Q702N8 1843 aaKnown RBP14.94□□□□□ -0.02
SMC1A-206ENST00000470241 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.93□□□□□ -0.02
SMC1A-206ENST00000470241 MSH6P52701 1360 aa14.93□□□□□ -0.02
SMC1A-206ENST00000470241 MINK1Q8N4C8 1332 aaPredicted RBP14.92□□□□□ -0.02
SMC1A-206ENST00000470241 ST20-MTHFSA0A0A6YYL1 179 aa14.91□□□□□ -0.02
SMC1A-206ENST00000470241 HIRIP3Q9BW71 556 aaPredicted RBP14.91□□□□□ -0.02
SMC1A-206ENST00000470241 NALCNQ8IZF0 1738 aa14.91□□□□□ -0.02
SMC1A-206ENST00000470241 DCCP43146 1447 aa14.91□□□□□ -0.02
SMC1A-206ENST00000470241 ATF3P18847 181 aa14.89□□□□□ -0.03
SMC1A-206ENST00000470241 CADPS2Q86UW7 1296 aa14.89□□□□□ -0.03
SMC1A-206ENST00000470241 TESK2Q96S53 571 aa14.89□□□□□ -0.03
SMC1A-206ENST00000470241 ADGRB2O60241 1585 aa14.89□□□□□ -0.03
SMC1A-206ENST00000470241 SBNO2Q9Y2G9 1366 aa14.88□□□□□ -0.03
SMC1A-206ENST00000470241 WASLO00401 505 aaPredicted RBP14.88□□□□□ -0.03
SMC1A-206ENST00000470241 HSPA5P11021 654 aaKnown RBP14.88□□□□□ -0.03
SMC1A-206ENST00000470241 EIF4G2P78344 907 aaKnown RBP eCLIP14.88□□□□□ -0.03
SMC1A-206ENST00000470241 CDC42BPGQ6DT37 1551 aa14.88□□□□□ -0.03
SMC1A-206ENST00000470241 MST1RQ04912 1400 aa14.86□□□□□ -0.03
SMC1A-206ENST00000470241 UBAP1LF5GYI3 381 aa14.86□□□□□ -0.03
SMC1A-206ENST00000470241 CDK19Q9BWU1 502 aa14.86□□□□□ -0.03
SMC1A-206ENST00000470241 QRICH2Q9H0J4 1663 aa14.86□□□□□ -0.03
SMC1A-206ENST00000470241 TOM1O60784 492 aa14.85□□□□□ -0.03
SMC1A-206ENST00000470241 SLAIN2Q9P270 581 aa14.85□□□□□ -0.03
SMC1A-206ENST00000470241 TULP4Q9NRJ4 1543 aa14.85□□□□□ -0.03
SMC1A-206ENST00000470241 NUTM2FA1L443 756 aa14.84□□□□□ -0.03
SMC1A-206ENST00000470241 PRR36Q9H6K5 1346 aa14.84□□□□□ -0.03
SMC1A-206ENST00000470241 C1orf167Q5SNV9 1468 aa14.83□□□□□ -0.03
SMC1A-206ENST00000470241 EVC2Q86UK5 1308 aa14.83□□□□□ -0.04
SMC1A-206ENST00000470241 CABP2Q9NPB3 220 aa14.82□□□□□ -0.04
SMC1A-206ENST00000470241 ANKARQ7Z5J8 1434 aa14.82□□□□□ -0.04
SMC1A-206ENST00000470241 FMN2Q9NZ56 1722 aa14.81□□□□□ -0.04
SMC1A-206ENST00000470241 SRPK2P78362 688 aaKnown RBP14.81□□□□□ -0.04
SMC1A-206ENST00000470241 NUDT16Q96DE0 195 aaKnown RBP14.81□□□□□ -0.04
SMC1A-206ENST00000470241 DISP3Q9P2K9 1392 aa14.81□□□□□ -0.04
SMC1A-206ENST00000470241 SLC24A1O60721 1099 aa14.8□□□□□ -0.04
SMC1A-206ENST00000470241 PIP4K2BP78356 416 aa14.8□□□□□ -0.04
SMC1A-206ENST00000470241 TMF1P82094 1093 aa14.8□□□□□ -0.04
SMC1A-206ENST00000470241 ORAI2Q96SN7 254 aa14.8□□□□□ -0.04
SMC1A-206ENST00000470241 ATP7BP35670 1465 aa14.8□□□□□ -0.04
SMC1A-206ENST00000470241 BRINP3Q76B58 766 aa14.79□□□□□ -0.04
SMC1A-206ENST00000470241 USP32Q8NFA0 1604 aa14.79□□□□□ -0.04
SMC1A-206ENST00000470241 ESCO1Q5FWF5 840 aa14.78□□□□□ -0.04
SMC1A-206ENST00000470241 PUS7Q96PZ0 661 aaKnown RBP14.78□□□□□ -0.04
SMC1A-206ENST00000470241 C11orf95C9JLR9 678 aaPredicted RBP14.77□□□□□ -0.05
SMC1A-206ENST00000470241 FBXO41Q8TF61 875 aa14.77□□□□□ -0.05
SMC1A-206ENST00000470241 CCDC61Q9Y6R9 512 aa14.77□□□□□ -0.05
SMC1A-206ENST00000470241 SCAF1Q9H7N4 1312 aaKnown RBP14.76□□□□□ -0.05
SMC1A-206ENST00000470241 PHF8Q9UPP1 1060 aa14.76□□□□□ -0.05
SMC1A-206ENST00000470241 ATAD2Q6PL18 1390 aa14.75□□□□□ -0.05
SMC1A-206ENST00000470241 PLEKHG3A1L390 1219 aa14.74□□□□□ -0.05
SMC1A-206ENST00000470241 CDCA8Q53HL2 280 aa14.74□□□□□ -0.05
SMC1A-206ENST00000470241 PMFBP1Q8TBY8 1022 aa14.74□□□□□ -0.05
SMC1A-206ENST00000470241 ROBO1Q9Y6N7 1651 aa14.74□□□□□ -0.05
SMC1A-206ENST00000470241 PPIP5K1Q6PFW1 1433 aa14.74□□□□□ -0.05
SMC1A-206ENST00000470241 DDX17Q92841 729 aaKnown RBP14.73□□□□□ -0.05
SMC1A-206ENST00000470241 CABP1Q9NZU7 370 aa14.73□□□□□ -0.05
SMC1A-206ENST00000470241 TOPAZ1Q8N9V7 1692 aa14.72□□□□□ -0.05
SMC1A-206ENST00000470241 FOXO3O43524 673 aa14.72□□□□□ -0.05
SMC1A-206ENST00000470241 SLC12A5Q9H2X9 1139 aa14.71□□□□□ -0.05
SMC1A-206ENST00000470241 POLR3AO14802 1390 aaPredicted RBP14.71□□□□□ -0.06
SMC1A-206ENST00000470241 RGPD8O14715 1765 aaPredicted RBP14.7□□□□□ -0.06
SMC1A-206ENST00000470241 ACEP12821 1306 aa14.7□□□□□ -0.06
SMC1A-206ENST00000470241 KIF7Q2M1P5 1343 aa14.7□□□□□ -0.06
SMC1A-206ENST00000470241 NGDNQ8NEJ9 315 aaKnown RBP14.7□□□□□ -0.06
SMC1A-206ENST00000470241 TMC1Q8TDI8 760 aa14.7□□□□□ -0.06
SMC1A-206ENST00000470241 AHDC1Q5TGY3 1603 aaPredicted RBP14.7□□□□□ -0.06
SMC1A-206ENST00000470241 NPHP3Q7Z494 1330 aa14.69□□□□□ -0.06
SMC1A-206ENST00000470241 KIF1AQ12756 1690 aa14.69□□□□□ -0.06
SMC1A-206ENST00000470241 HSPA1LP34931 641 aa14.69□□□□□ -0.06
SMC1A-206ENST00000470241 POLR3GLQ9BT43 218 aa14.69□□□□□ -0.06
SMC1A-206ENST00000470241 SOS2Q07890 1332 aaPredicted RBP14.68□□□□□ -0.06
SMC1A-206ENST00000470241 WASHC2AQ641Q2 1341 aa14.68□□□□□ -0.06
SMC1A-206ENST00000470241 XPCQ01831 940 aaPredicted RBP14.68□□□□□ -0.06
SMC1A-206ENST00000470241 ITSN1Q15811 1721 aa14.68□□□□□ -0.06
SMC1A-206ENST00000470241 CCDC7Q96M83 1385 aa14.68□□□□□ -0.06
SMC1A-206ENST00000470241 NINLQ9Y2I6 1382 aa14.68□□□□□ -0.06
SMC1A-206ENST00000470241 PXDNQ92626 1479 aa14.68□□□□□ -0.06
SMC1A-206ENST00000470241 CD163L1Q9NR16 1453 aa14.68□□□□□ -0.06
SMC1A-206ENST00000470241 CPSF1Q10570 1443 aaKnown RBP14.67□□□□□ -0.06
SMC1A-206ENST00000470241 NHSL1Q5SYE7 1610 aa14.67□□□□□ -0.06
SMC1A-206ENST00000470241 PSME1Q06323 249 aa14.67□□□□□ -0.06
SMC1A-206ENST00000470241 KRT28Q7Z3Y7 464 aa14.67□□□□□ -0.06
SMC1A-206ENST00000470241 A0A1W2PP64 1363 aa14.64□□□□□ -0.07
SMC1A-206ENST00000470241 ANKRD36BQ8N2N9 1353 aa14.64□□□□□ -0.07
SMC1A-206ENST00000470241 ZNF692Q9BU19 519 aaPredicted RBP14.64□□□□□ -0.07
SMC1A-206ENST00000470241 TERF2IPQ9NYB0 399 aa14.64□□□□□ -0.07
SMC1A-206ENST00000470241 USP6P35125 1406 aa14.64□□□□□ -0.07
SMC1A-206ENST00000470241 SSH2Q76I76 1423 aa14.64□□□□□ -0.07
SMC1A-206ENST00000470241 COL16A1Q07092 1604 aaPredicted RBP14.63□□□□□ -0.07
SMC1A-206ENST00000470241 SBNO1A3KN83 1393 aa14.63□□□□□ -0.07
SMC1A-206ENST00000470241 MYOM1P52179 1685 aa14.63□□□□□ -0.07
SMC1A-206ENST00000470241 HDGFL2Q7Z4V5 671 aaPredicted RBP14.63□□□□□ -0.07
SMC1A-206ENST00000470241 ILDR1Q86SU0 546 aaPredicted RBP14.63□□□□□ -0.07
SMC1A-206ENST00000470241 KTN1Q86UP2 1357 aaKnown RBP14.62□□□□□ -0.07
SMC1A-206ENST00000470241 PHLPP1O60346 1717 aa14.62□□□□□ -0.07
SMC1A-206ENST00000470241 LRRC59Q96AG4 307 aaKnown RBP14.62□□□□□ -0.07
SMC1A-206ENST00000470241 SPATA31A3Q5VYP0 1347 aa14.62□□□□□ -0.07
SMC1A-206ENST00000470241 BRD4O60885 1362 aaPredicted RBP14.61□□□□□ -0.07
SMC1A-206ENST00000470241 CARD14Q9BXL6 1004 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms