RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 SH3D19Q5HYK7 790 aa6.75□□□□□ -1.33
COL3A1-205ENST00000470167 RBM46Q8TBY0 533 aaKnown RBP6.75□□□□□ -1.33
COL3A1-205ENST00000470167 PCMTD1Q96MG8 357 aaPredicted RBP6.75□□□□□ -1.33
COL3A1-205ENST00000470167 BCL2L12Q9HB09 334 aa6.75□□□□□ -1.33
COL3A1-205ENST00000470167 WASHC2AQ641Q2 1341 aa6.75□□□□□ -1.33
COL3A1-205ENST00000470167 PPP1R3GB7ZBB8 358 aa6.74□□□□□ -1.33
COL3A1-205ENST00000470167 TMTC2Q8N394 836 aa6.74□□□□□ -1.33
COL3A1-205ENST00000470167 ZNF428Q96B54 188 aa6.74□□□□□ -1.33
COL3A1-205ENST00000470167 TSKSQ9UJT2 592 aa6.74□□□□□ -1.33
COL3A1-205ENST00000470167 MTMR7Q9Y216 660 aa6.74□□□□□ -1.33
COL3A1-205ENST00000470167 PSDA5PKW4 1024 aaPredicted RBP6.73□□□□□ -1.33
COL3A1-205ENST00000470167 C3orf80F5H4A9 247 aa6.73□□□□□ -1.33
COL3A1-205ENST00000470167 PTPREP23469 700 aa6.73□□□□□ -1.33
COL3A1-205ENST00000470167 C1orf115Q9H7X2 142 aa6.73□□□□□ -1.33
COL3A1-205ENST00000470167 HOXB1P14653 301 aaPredicted RBP6.72□□□□□ -1.33
COL3A1-205ENST00000470167 ANP32AP39687 249 aaKnown RBP6.72□□□□□ -1.33
COL3A1-205ENST00000470167 SLC52A1Q9NWF4 448 aa6.72□□□□□ -1.33
COL3A1-205ENST00000470167 PCDH10Q9P2E7 1040 aa6.72□□□□□ -1.33
COL3A1-205ENST00000470167 CADPSQ9ULU8 1353 aa6.71□□□□□ -1.33
COL3A1-205ENST00000470167 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.71□□□□□ -1.34
COL3A1-205ENST00000470167 RCCD1A6NED2 376 aa6.71□□□□□ -1.34
COL3A1-205ENST00000470167 SNPHO15079 494 aa6.71□□□□□ -1.34
COL3A1-205ENST00000470167 ONECUT3O60422 494 aaPredicted RBP6.71□□□□□ -1.34
COL3A1-205ENST00000470167 RBM25P49756 843 aaKnown RBP6.71□□□□□ -1.34
COL3A1-205ENST00000470167 RGS3P49796 1198 aa6.71□□□□□ -1.34
COL3A1-205ENST00000470167 SKIV2LQ15477 1246 aaKnown RBP6.71□□□□□ -1.34
COL3A1-205ENST00000470167 MYSM1Q5VVJ2 828 aa6.71□□□□□ -1.34
COL3A1-205ENST00000470167 NUDT18Q6ZVK8 323 aa6.71□□□□□ -1.34
COL3A1-205ENST00000470167 EYA1Q99502 592 aa6.71□□□□□ -1.34
COL3A1-205ENST00000470167 POLR3EQ9NVU0 708 aa6.71□□□□□ -1.34
COL3A1-205ENST00000470167 USP35Q9P2H5 1018 aa6.71□□□□□ -1.34
COL3A1-205ENST00000470167 LOC102724159A0A0B4J2E5 919 aa6.7□□□□□ -1.34
COL3A1-205ENST00000470167 TRIM6-TRIM34B2RNG4 842 aa6.7□□□□□ -1.34
COL3A1-205ENST00000470167 KDM4AO75164 1064 aa6.7□□□□□ -1.34
COL3A1-205ENST00000470167 HSP90AA1P07900 732 aaKnown RBP6.7□□□□□ -1.34
COL3A1-205ENST00000470167 FLIIQ13045 1269 aa6.7□□□□□ -1.34
COL3A1-205ENST00000470167 PWP2Q15269 919 aaKnown RBP6.7□□□□□ -1.34
COL3A1-205ENST00000470167 PROX2Q3B8N5 592 aa6.7□□□□□ -1.34
COL3A1-205ENST00000470167 LCE2DQ5TA82 110 aaPredicted RBP6.7□□□□□ -1.34
COL3A1-205ENST00000470167 UTP14CQ5TAP6 766 aaKnown RBP6.7□□□□□ -1.34
COL3A1-205ENST00000470167 CCDC125Q86Z20 511 aa6.7□□□□□ -1.34
COL3A1-205ENST00000470167 PROCA1Q8NCQ7 364 aaPredicted RBP6.7□□□□□ -1.34
COL3A1-205ENST00000470167 KCNK17Q96T54 332 aa6.7□□□□□ -1.34
COL3A1-205ENST00000470167 CARD10Q9BWT7 1032 aa6.7□□□□□ -1.34
COL3A1-205ENST00000470167 ATP1B4Q9UN42 357 aaPredicted RBP6.7□□□□□ -1.34
COL3A1-205ENST00000470167 LAS1LQ9Y4W2 734 aaKnown RBP6.7□□□□□ -1.34
COL3A1-205ENST00000470167 NBPF26B4DH59 902 aa6.69□□□□□ -1.34
COL3A1-205ENST00000470167 EGFL6Q8IUX8 553 aa6.69□□□□□ -1.34
COL3A1-205ENST00000470167 SMAP1Q8IYB5 467 aaPredicted RBP6.69□□□□□ -1.34
COL3A1-205ENST00000470167 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.69□□□□□ -1.34
COL3A1-205ENST00000470167 PDCL3Q9H2J4 239 aa6.69□□□□□ -1.34
COL3A1-205ENST00000470167 PNMA3Q9UL41 463 aa6.69□□□□□ -1.34
COL3A1-205ENST00000470167 SMAPO00193 183 aa6.68□□□□□ -1.34
COL3A1-205ENST00000470167 CLK2P49760 499 aaKnown RBP6.68□□□□□ -1.34
COL3A1-205ENST00000470167 SLC20A2Q08357 652 aa6.68□□□□□ -1.34
COL3A1-205ENST00000470167 TSHZ1Q6ZSZ6 1077 aa6.68□□□□□ -1.34
COL3A1-205ENST00000470167 TATDN2Q93075 761 aa6.68□□□□□ -1.34
COL3A1-205ENST00000470167 TBC1D2Q9BYX2 928 aa6.68□□□□□ -1.34
COL3A1-205ENST00000470167 NOP58Q9Y2X3 529 aaKnown RBP6.68□□□□□ -1.34
COL3A1-205ENST00000470167 SH3BP1Q9Y3L3 701 aa6.68□□□□□ -1.34
COL3A1-205ENST00000470167 DDX11L8A8MPP1 907 aa6.67□□□□□ -1.34
COL3A1-205ENST00000470167 CD46P15529 392 aa6.67□□□□□ -1.34
COL3A1-205ENST00000470167 DNAJB2P25686 324 aa6.67□□□□□ -1.34
COL3A1-205ENST00000470167 FAM50AQ14320 339 aaKnown RBP6.67□□□□□ -1.34
COL3A1-205ENST00000470167 CASC1Q6TDU7 716 aa6.67□□□□□ -1.34
COL3A1-205ENST00000470167 SGSM3Q96HU1 749 aa6.67□□□□□ -1.34
COL3A1-205ENST00000470167 ABCC9O60706 1549 aa6.66□□□□□ -1.34
COL3A1-205ENST00000470167 MCM6Q14566 821 aa6.66□□□□□ -1.34
COL3A1-205ENST00000470167 NBPF9Q3BBW0 867 aa6.66□□□□□ -1.34
COL3A1-205ENST00000470167 FOXD4L5Q5VV16 416 aaPredicted RBP6.66□□□□□ -1.34
COL3A1-205ENST00000470167 PACS2Q86VP3 889 aa6.66□□□□□ -1.34
COL3A1-205ENST00000470167 FOXD4L4Q8WXT5 416 aaPredicted RBP6.66□□□□□ -1.34
COL3A1-205ENST00000470167 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.66□□□□□ -1.34
COL3A1-205ENST00000470167 TMEM134Q9H6X4 195 aa6.66□□□□□ -1.34
COL3A1-205ENST00000470167 YY1AP1Q9H869 796 aa6.66□□□□□ -1.34
COL3A1-205ENST00000470167 LIMD1Q9UGP4 676 aa6.66□□□□□ -1.34
COL3A1-205ENST00000470167 RIPOR2Q9Y4F9 1068 aa6.66□□□□□ -1.34
COL3A1-205ENST00000470167 E9PSI1 815 aa6.65□□□□□ -1.34
COL3A1-205ENST00000470167 TCERG1O14776 1098 aaKnown RBP6.65□□□□□ -1.34
COL3A1-205ENST00000470167 APPP05067 770 aa6.65□□□□□ -1.34
COL3A1-205ENST00000470167 PSEN2P49810 448 aa6.65□□□□□ -1.34
COL3A1-205ENST00000470167 CC2D1BQ5T0F9 858 aaKnown RBP6.65□□□□□ -1.34
COL3A1-205ENST00000470167 SPTY2D1Q68D10 685 aaPredicted RBP6.65□□□□□ -1.34
COL3A1-205ENST00000470167 SULF1Q8IWU6 871 aa6.65□□□□□ -1.34
COL3A1-205ENST00000470167 SPIRE2Q8WWL2 714 aa6.65□□□□□ -1.34
COL3A1-205ENST00000470167 MKL1Q969V6 931 aa6.65□□□□□ -1.34
COL3A1-205ENST00000470167 CLUAP1Q96AJ1 413 aa6.65□□□□□ -1.34
COL3A1-205ENST00000470167 FBXO31Q5XUX0 539 aaPredicted RBP6.64□□□□□ -1.35
COL3A1-205ENST00000470167 RINLQ6ZS11 566 aa6.64□□□□□ -1.35
COL3A1-205ENST00000470167 OTUD6BQ8N6M0 293 aa6.64□□□□□ -1.35
COL3A1-205ENST00000470167 KCNH8Q96L42 1107 aa6.64□□□□□ -1.35
COL3A1-205ENST00000470167 ZBED2Q9BTP6 218 aa6.64□□□□□ -1.35
COL3A1-205ENST00000470167 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.64□□□□□ -1.35
COL3A1-205ENST00000470167 ARID3CA6NKF2 412 aa6.63□□□□□ -1.35
COL3A1-205ENST00000470167 RALBP1Q15311 655 aa6.63□□□□□ -1.35
COL3A1-205ENST00000470167 DIXDC1Q155Q3 683 aa6.63□□□□□ -1.35
COL3A1-205ENST00000470167 CCDC96Q2M329 555 aa6.63□□□□□ -1.35
COL3A1-205ENST00000470167 HSP90AB3PQ58FF7 597 aa6.63□□□□□ -1.35
COL3A1-205ENST00000470167 TAF3Q5VWG9 929 aa6.63□□□□□ -1.35
COL3A1-205ENST00000470167 RIC3Q7Z5B4 369 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms