RNA–Protein interactions for RNA: ENST00000469923.5

SHROOM3-203, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 764 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-203ENST00000469923 PIK3C2GO75747 1445 aa13.58□□□□□ -0.24
SHROOM3-203ENST00000469923 PRAM1Q96QH2 718 aa13.58□□□□□ -0.24
SHROOM3-203ENST00000469923 HIRIP3Q9BW71 556 aaPredicted RBP13.58□□□□□ -0.24
SHROOM3-203ENST00000469923 ABCC11Q96J66 1382 aa13.58□□□□□ -0.24
SHROOM3-203ENST00000469923 ADAMTS2O95450 1211 aa13.57□□□□□ -0.24
SHROOM3-203ENST00000469923 YTHDC2Q9H6S0 1430 aaKnown RBP13.56□□□□□ -0.24
SHROOM3-203ENST00000469923 HRCP23327 699 aa13.56□□□□□ -0.24
SHROOM3-203ENST00000469923 NBPF1Q3BBV0 1214 aa13.56□□□□□ -0.24
SHROOM3-203ENST00000469923 PTCH1Q13635 1447 aa13.56□□□□□ -0.24
SHROOM3-203ENST00000469923 MEX3CQ5U5Q3 659 aaKnown RBP13.55□□□□□ -0.24
SHROOM3-203ENST00000469923 LRRC59Q96AG4 307 aaKnown RBP13.55□□□□□ -0.24
SHROOM3-203ENST00000469923 AHDC1Q5TGY3 1603 aaPredicted RBP13.54□□□□□ -0.24
SHROOM3-203ENST00000469923 SOS2Q07890 1332 aaPredicted RBP13.54□□□□□ -0.24
SHROOM3-203ENST00000469923 PNPLA6Q8IY17 1366 aa13.54□□□□□ -0.24
SHROOM3-203ENST00000469923 DCCP43146 1447 aa13.54□□□□□ -0.24
SHROOM3-203ENST00000469923 NRXN1Q9ULB1 1477 aa13.54□□□□□ -0.24
SHROOM3-203ENST00000469923 IFT172Q9UG01 1749 aa13.53□□□□□ -0.24
SHROOM3-203ENST00000469923 C8orf37Q96NL8 207 aa13.53□□□□□ -0.24
SHROOM3-203ENST00000469923 MINK1Q8N4C8 1332 aaPredicted RBP13.53□□□□□ -0.24
SHROOM3-203ENST00000469923 PMFBP1Q8TBY8 1022 aa13.52□□□□□ -0.25
SHROOM3-203ENST00000469923 CABLES1Q8TDN4 633 aa13.52□□□□□ -0.25
SHROOM3-203ENST00000469923 AFF2P51816 1311 aa13.52□□□□□ -0.25
SHROOM3-203ENST00000469923 TECPR2O15040 1411 aa13.51□□□□□ -0.25
SHROOM3-203ENST00000469923 SPATA31A6Q5VVP1 1343 aa13.51□□□□□ -0.25
SHROOM3-203ENST00000469923 NEUROD1Q13562 356 aa13.51□□□□□ -0.25
SHROOM3-203ENST00000469923 PRAG1Q86YV5 1406 aa13.5□□□□□ -0.25
SHROOM3-203ENST00000469923 PRR36Q9H6K5 1346 aa13.5□□□□□ -0.25
SHROOM3-203ENST00000469923 KRT28Q7Z3Y7 464 aa13.5□□□□□ -0.25
SHROOM3-203ENST00000469923 SIRT1Q96EB6 747 aa13.5□□□□□ -0.25
SHROOM3-203ENST00000469923 POGKQ9P215 609 aa13.5□□□□□ -0.25
SHROOM3-203ENST00000469923 L3MBTL2Q969R5 705 aa13.49□□□□□ -0.25
SHROOM3-203ENST00000469923 QTRT2Q9H974 415 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-203ENST00000469923 NGLY1Q96IV0 654 aa13.48□□□□□ -0.25
SHROOM3-203ENST00000469923 NHSL1Q5SYE7 1610 aa13.47□□□□□ -0.25
SHROOM3-203ENST00000469923 ADGRB1O14514 1584 aa13.47□□□□□ -0.25
SHROOM3-203ENST00000469923 PHF8Q9UPP1 1060 aa13.47□□□□□ -0.25
SHROOM3-203ENST00000469923 MYOM2P54296 1465 aa13.46□□□□□ -0.25
SHROOM3-203ENST00000469923 PXDNQ92626 1479 aa13.46□□□□□ -0.25
SHROOM3-203ENST00000469923 RXRBP28702 533 aa13.44□□□□□ -0.26
SHROOM3-203ENST00000469923 NBPF8Q3BBV2 869 aa13.44□□□□□ -0.26
SHROOM3-203ENST00000469923 RGPD8O14715 1765 aaPredicted RBP13.44□□□□□ -0.26
SHROOM3-203ENST00000469923 SHPRHQ149N8 1683 aa13.44□□□□□ -0.26
SHROOM3-203ENST00000469923 SPATA31A3Q5VYP0 1347 aa13.43□□□□□ -0.26
SHROOM3-203ENST00000469923 WASLO00401 505 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-203ENST00000469923 ZNF772Q68DY9 489 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-203ENST00000469923 LMOD2Q6P5Q4 547 aa13.43□□□□□ -0.26
SHROOM3-203ENST00000469923 NPHP3Q7Z494 1330 aa13.42□□□□□ -0.26
SHROOM3-203ENST00000469923 ACIN1Q9UKV3 1341 aaKnown RBP13.42□□□□□ -0.26
SHROOM3-203ENST00000469923 PSME1Q06323 249 aa13.42□□□□□ -0.26
SHROOM3-203ENST00000469923 CDK19Q9BWU1 502 aa13.42□□□□□ -0.26
SHROOM3-203ENST00000469923 CDC42BPGQ6DT37 1551 aa13.41□□□□□ -0.26
SHROOM3-203ENST00000469923 FNBP4Q8N3X1 1017 aaPredicted RBP13.41□□□□□ -0.26
SHROOM3-203ENST00000469923 USP21Q9UK80 565 aa13.41□□□□□ -0.26
SHROOM3-203ENST00000469923 FAM83GA6ND36 823 aa13.4□□□□□ -0.26
SHROOM3-203ENST00000469923 NUTM2GQ5VZR2 741 aa13.4□□□□□ -0.26
SHROOM3-203ENST00000469923 UPF1Q92900 1129 aaKnown RBP eCLIP13.4□□□□□ -0.26
SHROOM3-203ENST00000469923 NUDT16Q96DE0 195 aaKnown RBP13.4□□□□□ -0.26
SHROOM3-203ENST00000469923 USP32Q8NFA0 1604 aa13.39□□□□□ -0.27
SHROOM3-203ENST00000469923 FMN2Q9NZ56 1722 aa13.39□□□□□ -0.27
SHROOM3-203ENST00000469923 LAMC1P11047 1609 aa13.39□□□□□ -0.27
SHROOM3-203ENST00000469923 BCL9LQ86UU0 1499 aa13.38□□□□□ -0.27
SHROOM3-203ENST00000469923 CABP2Q9NPB3 220 aa13.38□□□□□ -0.27
SHROOM3-203ENST00000469923 KNDC1Q76NI1 1749 aa13.38□□□□□ -0.27
SHROOM3-203ENST00000469923 DLC1Q96QB1 1528 aa13.36□□□□□ -0.27
SHROOM3-203ENST00000469923 RBM6P78332 1123 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-203ENST00000469923 PAK3O75914 559 aaPredicted RBP13.35□□□□□ -0.27
SHROOM3-203ENST00000469923 RGS12O14924 1447 aa13.35□□□□□ -0.27
SHROOM3-203ENST00000469923 NGDNQ8NEJ9 315 aaKnown RBP13.34□□□□□ -0.27
SHROOM3-203ENST00000469923 ATRNO75882 1429 aa13.32□□□□□ -0.28
SHROOM3-203ENST00000469923 STAC3Q96MF2 364 aa13.32□□□□□ -0.28
SHROOM3-203ENST00000469923 TRPC5Q9UL62 973 aaPredicted RBP13.32□□□□□ -0.28
SHROOM3-203ENST00000469923 ACEP12821 1306 aa13.32□□□□□ -0.28
SHROOM3-203ENST00000469923 CHRNA2Q15822 529 aa13.31□□□□□ -0.28
SHROOM3-203ENST00000469923 UNC5CLQ8IV45 518 aa13.31□□□□□ -0.28
SHROOM3-203ENST00000469923 GJD4Q96KN9 370 aaPredicted RBP13.31□□□□□ -0.28
SHROOM3-203ENST00000469923 CABP1Q9NZU7 370 aa13.31□□□□□ -0.28
SHROOM3-203ENST00000469923 SBNO1A3KN83 1393 aa13.31□□□□□ -0.28
SHROOM3-203ENST00000469923 TNS3Q68CZ2 1445 aa13.3□□□□□ -0.28
SHROOM3-203ENST00000469923 SRCAPQ6ZRS2 3230 aa13.3□□□□□ -0.28
SHROOM3-203ENST00000469923 TRIM26Q12899 539 aaPredicted RBP13.3□□□□□ -0.28
SHROOM3-203ENST00000469923 COL22A1Q8NFW1 1626 aaPredicted RBP13.3□□□□□ -0.28
SHROOM3-203ENST00000469923 EP400Q96L91 3159 aa13.3□□□□□ -0.28
SHROOM3-203ENST00000469923 PLEKHG3A1L390 1219 aa13.29□□□□□ -0.28
SHROOM3-203ENST00000469923 ZC3H6P61129 1189 aaKnown RBP13.29□□□□□ -0.28
SHROOM3-203ENST00000469923 SRPK2P78362 688 aaKnown RBP13.29□□□□□ -0.28
SHROOM3-203ENST00000469923 FAM182BQ5T319 152 aa13.29□□□□□ -0.28
SHROOM3-203ENST00000469923 CENPJQ9HC77 1338 aaPredicted RBP13.29□□□□□ -0.28
SHROOM3-203ENST00000469923 ANKARQ7Z5J8 1434 aa13.29□□□□□ -0.28
SHROOM3-203ENST00000469923 ARHGEF28Q8N1W1 1705 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-203ENST00000469923 HAP1P54257 671 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-203ENST00000469923 BTG4Q9NY30 223 aa13.28□□□□□ -0.28
SHROOM3-203ENST00000469923 ZRANB1Q9UGI0 708 aa13.28□□□□□ -0.28
SHROOM3-203ENST00000469923 CCDC61Q9Y6R9 512 aa13.28□□□□□ -0.28
SHROOM3-203ENST00000469923 ATP7BP35670 1465 aa13.28□□□□□ -0.28
SHROOM3-203ENST00000469923 SLIT2O94813 1529 aa13.27□□□□□ -0.29
SHROOM3-203ENST00000469923 TULP4Q9NRJ4 1543 aa13.27□□□□□ -0.29
SHROOM3-203ENST00000469923 SEPT12Q8IYM1 358 aa13.26□□□□□ -0.29
SHROOM3-203ENST00000469923 ADGRB2O60241 1585 aa13.25□□□□□ -0.29
SHROOM3-203ENST00000469923 RALGAPBQ86X10 1494 aa13.25□□□□□ -0.29
SHROOM3-203ENST00000469923 GPRASP1Q5JY77 1395 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms