RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 PRAG1Q86YV5 1406 aa19.65■□□□□ 0.74
CPSF4-210ENST00000469897 LRPPRCP42704 1394 aaKnown RBP19.64■□□□□ 0.73
CPSF4-210ENST00000469897 ABCC11Q96J66 1382 aa19.64■□□□□ 0.73
CPSF4-210ENST00000469897 SHPRHQ149N8 1683 aa19.64■□□□□ 0.73
CPSF4-210ENST00000469897 NALCNQ8IZF0 1738 aa19.63■□□□□ 0.73
CPSF4-210ENST00000469897 XPCQ01831 940 aaPredicted RBP19.63■□□□□ 0.73
CPSF4-210ENST00000469897 CFAP70Q5T0N1 1121 aa19.63■□□□□ 0.73
CPSF4-210ENST00000469897 C14orf93Q9H972 538 aaKnown RBP19.63■□□□□ 0.73
CPSF4-210ENST00000469897 PLEKHH1Q9ULM0 1364 aa19.62■□□□□ 0.73
CPSF4-210ENST00000469897 RAB3GAP2Q9H2M9 1393 aa19.61■□□□□ 0.73
CPSF4-210ENST00000469897 UPF1Q92900 1129 aaKnown RBP eCLIP19.61■□□□□ 0.73
CPSF4-210ENST00000469897 SETD1AO15047 1707 aaKnown RBP19.61■□□□□ 0.73
CPSF4-210ENST00000469897 SIRT1Q96EB6 747 aa19.6■□□□□ 0.73
CPSF4-210ENST00000469897 PPLO60437 1756 aa19.6■□□□□ 0.73
CPSF4-210ENST00000469897 NHSL1Q5SYE7 1610 aa19.59■□□□□ 0.73
CPSF4-210ENST00000469897 NPHP3Q7Z494 1330 aa19.59■□□□□ 0.73
CPSF4-210ENST00000469897 PIK3C2GO75747 1445 aa19.59■□□□□ 0.73
CPSF4-210ENST00000469897 RBM6P78332 1123 aaKnown RBP19.58■□□□□ 0.72
CPSF4-210ENST00000469897 USP21Q9UK80 565 aa19.57■□□□□ 0.72
CPSF4-210ENST00000469897 TECPR2O15040 1411 aa19.57■□□□□ 0.72
CPSF4-210ENST00000469897 YTHDC2Q9H6S0 1430 aaKnown RBP19.57■□□□□ 0.72
CPSF4-210ENST00000469897 SAFB2Q14151 953 aaKnown RBP eCLIP19.56■□□□□ 0.72
CPSF4-210ENST00000469897 KDM2AQ9Y2K7 1162 aa19.56■□□□□ 0.72
CPSF4-210ENST00000469897 DHX57Q6P158 1386 aaKnown RBP19.56■□□□□ 0.72
CPSF4-210ENST00000469897 FNBP4Q8N3X1 1017 aaPredicted RBP19.54■□□□□ 0.72
CPSF4-210ENST00000469897 PRAM1Q96QH2 718 aa19.54■□□□□ 0.72
CPSF4-210ENST00000469897 KRT28Q7Z3Y7 464 aa19.53■□□□□ 0.72
CPSF4-210ENST00000469897 DCAF11Q8TEB1 546 aa19.52■□□□□ 0.72
CPSF4-210ENST00000469897 POGKQ9P215 609 aa19.52■□□□□ 0.72
CPSF4-210ENST00000469897 TRPC5Q9UL62 973 aaPredicted RBP19.51■□□□□ 0.71
CPSF4-210ENST00000469897 CDC42BPGQ6DT37 1551 aa19.5■□□□□ 0.71
CPSF4-210ENST00000469897 TRAK1Q9UPV9 953 aa19.5■□□□□ 0.71
CPSF4-210ENST00000469897 CDK12Q9NYV4 1490 aaPredicted RBP19.49■□□□□ 0.71
CPSF4-210ENST00000469897 HRCP23327 699 aa19.49■□□□□ 0.71
CPSF4-210ENST00000469897 PHF8Q9UPP1 1060 aa19.49■□□□□ 0.71
CPSF4-210ENST00000469897 SPATA31A3Q5VYP0 1347 aa19.49■□□□□ 0.71
CPSF4-210ENST00000469897 PXDNQ92626 1479 aa19.48■□□□□ 0.71
CPSF4-210ENST00000469897 NRXN1Q9ULB1 1477 aa19.48■□□□□ 0.71
CPSF4-210ENST00000469897 LAMC1P11047 1609 aa19.48■□□□□ 0.71
CPSF4-210ENST00000469897 PLEKHG5O94827 1062 aa19.47■□□□□ 0.71
CPSF4-210ENST00000469897 RGS12O14924 1447 aa19.46■□□□□ 0.71
CPSF4-210ENST00000469897 PSME1Q06323 249 aa19.46■□□□□ 0.71
CPSF4-210ENST00000469897 PMFBP1Q8TBY8 1022 aa19.46■□□□□ 0.71
CPSF4-210ENST00000469897 MYOM2P54296 1465 aa19.46■□□□□ 0.71
CPSF4-210ENST00000469897 HIRIP3Q9BW71 556 aaPredicted RBP19.45■□□□□ 0.7
CPSF4-210ENST00000469897 LMOD2Q6P5Q4 547 aa19.44■□□□□ 0.7
CPSF4-210ENST00000469897 CABLES1Q8TDN4 633 aa19.44■□□□□ 0.7
CPSF4-210ENST00000469897 IFT172Q9UG01 1749 aa19.44■□□□□ 0.7
CPSF4-210ENST00000469897 MINK1Q8N4C8 1332 aaPredicted RBP19.43■□□□□ 0.7
CPSF4-210ENST00000469897 STAC3Q96MF2 364 aa19.42■□□□□ 0.7
CPSF4-210ENST00000469897 HAP1P54257 671 aaPredicted RBP19.41■□□□□ 0.7
CPSF4-210ENST00000469897 GJD4Q96KN9 370 aaPredicted RBP19.41■□□□□ 0.7
CPSF4-210ENST00000469897 BCL9LQ86UU0 1499 aa19.41■□□□□ 0.7
CPSF4-210ENST00000469897 ATRNO75882 1429 aa19.4■□□□□ 0.7
CPSF4-210ENST00000469897 UNC5CLQ8IV45 518 aa19.39■□□□□ 0.69
CPSF4-210ENST00000469897 COL22A1Q8NFW1 1626 aaPredicted RBP19.37■□□□□ 0.69
CPSF4-210ENST00000469897 WASLO00401 505 aaPredicted RBP19.37■□□□□ 0.69
CPSF4-210ENST00000469897 KNDC1Q76NI1 1749 aa19.37■□□□□ 0.69
CPSF4-210ENST00000469897 SBNO1A3KN83 1393 aa19.35■□□□□ 0.69
CPSF4-210ENST00000469897 FMN2Q9NZ56 1722 aa19.35■□□□□ 0.69
CPSF4-210ENST00000469897 ADGRB1O14514 1584 aa19.35■□□□□ 0.69
CPSF4-210ENST00000469897 DLC1Q96QB1 1528 aa19.35■□□□□ 0.69
CPSF4-210ENST00000469897 ATAD2Q6PL18 1390 aa19.34■□□□□ 0.69
CPSF4-210ENST00000469897 PRR36Q9H6K5 1346 aa19.34■□□□□ 0.69
CPSF4-210ENST00000469897 TNS3Q68CZ2 1445 aa19.34■□□□□ 0.69
CPSF4-210ENST00000469897 FAM83GA6ND36 823 aa19.33■□□□□ 0.68
CPSF4-210ENST00000469897 ANKARQ7Z5J8 1434 aa19.33■□□□□ 0.68
CPSF4-210ENST00000469897 NGDNQ8NEJ9 315 aaKnown RBP19.32■□□□□ 0.68
CPSF4-210ENST00000469897 ARHGEF10O15013 1369 aa19.31■□□□□ 0.68
CPSF4-210ENST00000469897 GPRASP1Q5JY77 1395 aa19.31■□□□□ 0.68
CPSF4-210ENST00000469897 SLIT2O94813 1529 aa19.3■□□□□ 0.68
CPSF4-210ENST00000469897 PAK3O75914 559 aaPredicted RBP19.3■□□□□ 0.68
CPSF4-210ENST00000469897 CCDC9Q9Y3X0 531 aaKnown RBP19.3■□□□□ 0.68
CPSF4-210ENST00000469897 VPS72Q15906 364 aa19.29■□□□□ 0.68
CPSF4-210ENST00000469897 NBPF1Q3BBV0 1214 aa19.29■□□□□ 0.68
CPSF4-210ENST00000469897 NUDT16Q96DE0 195 aaKnown RBP19.29■□□□□ 0.68
CPSF4-210ENST00000469897 CDK19Q9BWU1 502 aa19.29■□□□□ 0.68
CPSF4-210ENST00000469897 KIF1AQ12756 1690 aa19.29■□□□□ 0.68
CPSF4-210ENST00000469897 SEPT12Q8IYM1 358 aa19.28■□□□□ 0.68
CPSF4-210ENST00000469897 CCDC125Q86Z20 511 aa19.27■□□□□ 0.68
CPSF4-210ENST00000469897 EIF3AQ14152 1382 aaKnown RBP19.27■□□□□ 0.68
CPSF4-210ENST00000469897 RALGAPBQ86X10 1494 aa19.27■□□□□ 0.67
CPSF4-210ENST00000469897 ONECUT3O60422 494 aaPredicted RBP19.25■□□□□ 0.67
CPSF4-210ENST00000469897 BTG4Q9NY30 223 aa19.25■□□□□ 0.67
CPSF4-210ENST00000469897 USP32Q8NFA0 1604 aa19.23■□□□□ 0.67
CPSF4-210ENST00000469897 RGPD8O14715 1765 aaPredicted RBP19.22■□□□□ 0.67
CPSF4-210ENST00000469897 TULP4Q9NRJ4 1543 aa19.21■□□□□ 0.67
CPSF4-210ENST00000469897 ADGRB2O60241 1585 aa19.21■□□□□ 0.67
CPSF4-210ENST00000469897 NBPF8Q3BBV2 869 aa19.21■□□□□ 0.67
CPSF4-210ENST00000469897 CCDC61Q9Y6R9 512 aa19.21■□□□□ 0.67
CPSF4-210ENST00000469897 NUTM2GQ5VZR2 741 aa19.2■□□□□ 0.66
CPSF4-210ENST00000469897 GLI3P10071 1580 aa19.19■□□□□ 0.66
CPSF4-210ENST00000469897 A0A0G2JS52 829 aa19.19■□□□□ 0.66
CPSF4-210ENST00000469897 MYT1Q01538 1121 aa19.19■□□□□ 0.66
CPSF4-210ENST00000469897 FAM98CQ17RN3 349 aaKnown RBP19.19■□□□□ 0.66
CPSF4-210ENST00000469897 KRT27Q7Z3Y8 459 aa19.19■□□□□ 0.66
CPSF4-210ENST00000469897 L3MBTL2Q969R5 705 aa19.19■□□□□ 0.66
CPSF4-210ENST00000469897 SIN3AQ96ST3 1273 aa19.19■□□□□ 0.66
CPSF4-210ENST00000469897 ZRANB1Q9UGI0 708 aa19.19■□□□□ 0.66
CPSF4-210ENST00000469897 ACEP12821 1306 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 447.1 ms